Wall clock time and date at job start Sat Apr 11 2020 06:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42897 * 109.47279 * 2 1 4 4 C 1.42898 * 114.00327 * 184.95268 * 3 2 1 5 5 H 1.08998 * 109.47035 * 34.14243 * 4 3 2 6 6 C 1.50703 * 109.46753 * 274.15091 * 4 3 2 7 7 O 1.21284 * 120.00166 * 354.99248 * 6 4 3 8 8 N 1.34781 * 120.00073 * 175.00251 * 6 4 3 9 9 C 1.46493 * 119.99948 * 179.97438 * 8 6 4 10 10 C 1.52994 * 109.46639 * 60.02348 * 9 8 6 11 11 C 1.53040 * 109.45833 * 300.05958 * 9 8 6 12 12 C 1.53194 * 109.31458 * 301.34847 * 11 9 8 13 13 N 1.46921 * 108.77512 * 305.36077 * 12 11 9 14 14 C 1.36938 * 120.63388 * 233.58507 * 13 12 11 15 15 H 1.08002 * 119.99872 * 33.27056 * 14 13 12 16 16 C 1.38816 * 120.00009 * 213.26702 * 14 13 12 17 17 N 1.31622 * 119.99892 * 11.69047 * 16 14 13 18 18 Si 1.86798 * 119.99696 * 191.69093 * 16 14 13 19 19 H 1.48492 * 109.47230 * 90.00191 * 18 16 14 20 20 H 1.48502 * 109.46715 * 210.00288 * 18 16 14 21 21 H 1.48493 * 109.47307 * 329.99780 * 18 16 14 22 22 C 1.46932 * 118.73586 * 53.61033 * 13 12 11 23 23 C 1.53044 * 109.45715 * 179.97438 * 9 8 6 24 24 C 1.52996 * 109.47691 * 154.14741 * 4 3 2 25 25 H 1.09005 * 110.45292 * 68.60455 * 24 4 3 26 26 C 1.54512 * 110.51094 * 306.00202 * 24 4 3 27 27 C 1.54474 * 104.06402 * 241.35305 * 26 24 4 28 28 O 1.44426 * 104.80063 * 336.01964 * 27 26 24 29 29 C 1.44427 * 105.27870 * 40.51364 * 28 27 26 30 30 H 1.08990 * 109.47194 * 60.00367 * 1 2 3 31 31 H 1.09005 * 109.46941 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46964 * 300.00389 * 1 2 3 33 33 H 1.08995 * 109.47291 * 239.99257 * 2 1 3 34 34 H 1.09000 * 109.47257 * 119.99503 * 2 1 3 35 35 H 0.97007 * 119.99673 * 359.97438 * 8 6 4 36 36 H 1.08998 * 109.47209 * 59.99186 * 10 9 8 37 37 H 1.08993 * 109.47626 * 180.02562 * 10 9 8 38 38 H 1.09002 * 109.46760 * 300.00372 * 10 9 8 39 39 H 1.09002 * 109.49698 * 61.30041 * 11 9 8 40 40 H 1.09006 * 109.49850 * 181.39739 * 11 9 8 41 41 H 1.09005 * 109.58766 * 185.57688 * 12 11 9 42 42 H 1.08993 * 109.58537 * 65.15534 * 12 11 9 43 43 H 0.96998 * 119.99518 * 179.97438 * 17 16 14 44 44 H 1.09005 * 109.58866 * 186.59815 * 22 13 12 45 45 H 1.09003 * 109.58734 * 66.17917 * 22 13 12 46 46 H 1.09005 * 109.49610 * 178.60598 * 23 9 8 47 47 H 1.08994 * 109.50075 * 298.66684 * 23 9 8 48 48 H 1.08999 * 110.50804 * 359.97438 * 26 24 4 49 49 H 1.08999 * 110.50805 * 122.70678 * 26 24 4 50 50 H 1.08998 * 110.37355 * 94.84774 * 27 26 24 51 51 H 1.08995 * 110.37202 * 217.19273 * 27 26 24 52 52 H 1.08994 * 110.37461 * 200.65547 * 29 28 27 53 53 H 1.09006 * 110.46682 * 78.35978 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4263 1.4617 -0.1127 5 1 3.8063 0.6600 -0.7458 6 6 4.0487 1.3587 1.2559 7 8 3.3426 1.2940 2.2399 8 7 5.3900 1.3387 1.3865 9 6 5.9950 1.2392 2.7170 10 6 5.5392 -0.0578 3.3885 11 6 5.5572 2.4342 3.5668 12 6 5.9849 3.7321 2.8745 13 7 7.4295 3.6747 2.6130 14 6 8.2568 4.6779 3.0424 15 1 8.0396 5.2003 3.9624 16 6 9.3746 5.0234 2.2954 17 7 9.5188 4.5574 1.0729 18 14 10.6740 6.1496 3.0251 19 1 11.7000 5.3344 3.7234 20 1 11.3178 6.9314 1.9390 21 1 10.0371 7.0786 3.9928 22 6 7.9697 2.5206 1.8814 23 6 7.5197 1.2358 2.5847 24 6 3.7813 2.8140 -0.7340 25 1 3.5451 3.6241 -0.0438 26 6 3.0340 3.0079 -2.0724 27 6 4.1639 3.1412 -3.1173 28 8 5.3095 3.5977 -2.3657 29 6 5.2743 2.8533 -1.1285 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 5.9547 1.3903 0.5995 36 1 5.8503 -0.9091 2.7832 37 1 5.9889 -0.1318 4.3786 38 1 4.4533 -0.0562 3.4823 39 1 4.4731 2.4225 3.6801 40 1 6.0267 2.3739 4.5487 41 1 5.7642 4.5813 3.5214 42 1 5.4469 3.8382 1.9326 43 1 10.2997 4.7991 0.5508 44 1 9.0585 2.5704 1.8728 45 1 7.5935 2.5279 0.8583 46 1 7.9707 1.1867 3.5759 47 1 7.8322 0.3709 1.9996 48 1 2.4120 2.1400 -2.2916 49 1 2.4303 3.9150 -2.0448 50 1 4.3720 2.1749 -3.5766 51 1 3.8929 3.8734 -3.8779 52 1 5.8562 3.3642 -0.3615 53 1 5.6531 1.8426 -1.2810 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270243680.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:22 Heat of formation + Delta-G solvation = -127.585037 kcal Electronic energy + Delta-G solvation = -33266.670166 eV Core-core repulsion = 29138.175405 eV Total energy + Delta-G solvation = -4128.494761 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.91740 -40.37399 -39.31908 -38.10468 -36.04770 -34.60849 -33.52542 -32.37123 -31.82493 -31.62198 -30.28550 -29.05224 -27.35922 -25.91635 -24.27768 -23.94967 -23.52128 -22.81435 -21.97503 -21.45744 -20.22448 -18.98982 -18.67304 -17.83036 -17.33903 -16.95352 -16.83843 -16.32384 -16.16339 -16.08172 -15.73141 -15.61060 -15.24658 -15.14341 -14.89989 -14.79710 -14.49595 -14.07528 -14.01991 -13.42599 -13.33379 -13.26717 -13.08412 -13.06643 -12.89003 -12.78950 -12.64862 -12.62629 -12.52521 -12.31889 -12.20650 -12.15311 -12.12190 -11.97253 -11.80282 -11.58235 -11.42012 -11.30695 -11.05726 -10.79729 -10.53250 -10.10115 -9.95435 -8.55678 -7.85632 -5.36417 1.46635 1.47842 1.56230 1.56381 2.08623 2.51152 2.56489 2.99998 3.30100 3.41814 3.68596 3.72029 3.74888 3.84521 3.91130 3.99018 4.04594 4.12075 4.14567 4.19651 4.23996 4.34258 4.45366 4.47614 4.50903 4.62437 4.70387 4.75529 4.78594 4.82069 4.83942 4.87886 4.89548 4.92312 4.98122 5.04949 5.07221 5.11666 5.14518 5.20718 5.28141 5.29285 5.35489 5.48404 5.66093 5.66856 5.77726 5.82994 6.05733 6.43728 6.61934 7.19398 7.27044 7.86752 8.41380 9.19242 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004091 C = 0.003367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.876353 B = 6843.073379 C = 8313.620525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.368 6.368 4 C 0.094 3.906 5 H 0.114 0.886 6 C 0.488 3.512 7 O -0.555 6.555 8 N -0.706 5.706 9 C 0.186 3.814 10 C -0.149 4.149 11 C -0.131 4.131 12 C 0.155 3.845 13 N -0.602 5.602 14 C -0.269 4.269 15 H 0.054 0.946 16 C -0.037 4.037 17 N -0.924 5.924 18 Si 0.962 3.038 19 H -0.283 1.283 20 H -0.294 1.294 21 H -0.275 1.275 22 C 0.182 3.818 23 C -0.134 4.134 24 C -0.109 4.109 25 H 0.068 0.932 26 C -0.131 4.131 27 C 0.035 3.965 28 O -0.396 6.396 29 C 0.054 3.946 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.038 0.962 35 H 0.402 0.598 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.059 0.941 39 H 0.067 0.933 40 H 0.060 0.940 41 H 0.036 0.964 42 H 0.007 0.993 43 H 0.250 0.750 44 H 0.052 0.948 45 H 0.010 0.990 46 H 0.068 0.932 47 H 0.083 0.917 48 H 0.103 0.897 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.072 0.928 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.830 -13.226 -7.572 20.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.028 4.028 3 O -0.286 6.286 4 C 0.032 3.968 5 H 0.132 0.868 6 C 0.274 3.726 7 O -0.433 6.433 8 N -0.360 5.360 9 C 0.100 3.900 10 C -0.207 4.207 11 C -0.171 4.171 12 C 0.029 3.971 13 N -0.325 5.325 14 C -0.400 4.400 15 H 0.072 0.928 16 C -0.233 4.233 17 N -0.569 5.569 18 Si 0.791 3.209 19 H -0.209 1.209 20 H -0.220 1.220 21 H -0.200 1.200 22 C 0.056 3.944 23 C -0.173 4.173 24 C -0.128 4.128 25 H 0.086 0.914 26 C -0.168 4.168 27 C -0.041 4.041 28 O -0.315 6.315 29 C -0.023 4.023 30 H 0.088 0.912 31 H 0.110 0.890 32 H 0.067 0.933 33 H 0.091 0.909 34 H 0.056 0.944 35 H 0.239 0.761 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.079 0.921 41 H 0.054 0.946 42 H 0.024 0.976 43 H 0.060 0.940 44 H 0.070 0.930 45 H 0.028 0.972 46 H 0.087 0.913 47 H 0.101 0.899 48 H 0.121 0.879 49 H 0.097 0.903 50 H 0.099 0.901 51 H 0.123 0.877 52 H 0.090 0.910 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -14.195 -12.911 -7.031 20.436 hybrid contribution 1.235 0.831 0.351 1.530 sum -12.960 -12.080 -6.680 18.934 Atomic orbital electron populations 1.21717 0.92391 1.03399 1.02679 1.22781 0.96792 0.82584 1.00658 1.87978 1.18137 1.28300 1.94143 1.21966 0.83416 0.99285 0.92113 0.86827 1.21684 0.82493 0.75770 0.92632 1.90612 1.62160 1.50017 1.40502 1.46330 1.06326 1.73686 1.09679 1.20194 0.92616 0.94939 0.82234 1.22095 1.02157 0.95644 1.00785 1.22234 1.00723 0.95450 0.98675 1.20822 0.84890 0.95419 0.95979 1.44129 1.01379 1.20708 1.66316 1.19372 1.05663 1.12500 1.02432 0.92785 1.25810 1.02250 1.00082 0.95189 1.70102 1.29195 1.48558 1.09022 0.85354 0.79471 0.78833 0.77245 1.20941 1.22038 1.20021 1.20565 0.97853 0.84143 0.91800 1.22375 0.93219 0.99381 1.02345 1.22417 0.95972 0.95584 0.98859 0.91382 1.22859 0.98158 1.04381 0.91425 1.23753 0.84102 1.01433 0.94839 1.89214 1.48331 1.63836 1.30104 1.23466 0.94686 0.97223 0.86921 0.91213 0.89037 0.93328 0.90879 0.94357 0.76080 0.91430 0.91367 0.92191 0.91432 0.92109 0.94564 0.97550 0.94043 0.93002 0.97158 0.91338 0.89853 0.87884 0.90349 0.90065 0.87719 0.90976 0.90140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 10.28 71.98 0.74 -1.48 16 2 C 0.05 0.89 6.41 71.98 0.46 1.35 16 3 O -0.37 -9.00 8.73 -129.99 -1.13 -10.14 16 4 C 0.09 2.21 1.99 29.85 0.06 2.27 16 5 H 0.11 1.95 7.56 -2.39 -0.02 1.93 16 6 C 0.49 14.59 6.46 87.66 0.57 15.16 16 7 O -0.55 -20.00 12.49 15.95 0.20 -19.80 16 8 N -0.71 -20.81 3.78 -422.80 -1.60 -22.40 16 9 C 0.19 5.96 0.66 3.63 0.00 5.97 16 10 C -0.15 -4.10 8.40 71.98 0.60 -3.50 16 11 C -0.13 -4.93 4.67 30.67 0.14 -4.78 16 12 C 0.15 6.86 6.26 86.36 0.54 7.40 16 13 N -0.60 -29.79 2.97 -699.00 -2.08 -31.87 16 14 C -0.27 -14.90 9.55 84.03 0.80 -14.10 16 15 H 0.05 3.01 7.86 -2.91 -0.02 2.99 16 16 C -0.04 -2.02 5.01 84.86 0.43 -1.60 16 17 N -0.92 -53.07 11.26 21.65 0.24 -52.82 16 18 Si 0.96 44.93 29.57 68.60 2.03 46.96 16 19 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 C 0.18 8.10 4.97 86.37 0.43 8.53 16 23 C -0.13 -4.57 4.96 30.69 0.15 -4.41 16 24 C -0.11 -2.77 2.87 -9.78 -0.03 -2.80 16 25 H 0.07 2.13 8.14 -2.38 -0.02 2.11 16 26 C -0.13 -2.55 6.45 31.61 0.20 -2.35 16 27 C 0.03 0.69 7.63 72.48 0.55 1.24 16 28 O -0.40 -12.12 11.65 -148.98 -1.74 -13.86 16 29 C 0.05 1.54 5.45 72.48 0.40 1.94 16 30 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 31 H 0.09 0.99 8.14 -2.38 -0.02 0.97 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.96 7.97 -2.39 -0.02 0.94 16 34 H 0.04 0.83 7.96 -2.39 -0.02 0.81 16 35 H 0.40 11.18 4.63 -92.70 -0.43 10.75 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 38 H 0.06 1.84 6.17 -2.39 -0.01 1.82 16 39 H 0.07 2.63 6.20 -2.39 -0.01 2.61 16 40 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 41 H 0.04 1.66 7.93 -2.38 -0.02 1.64 16 42 H 0.01 0.30 7.65 -2.39 -0.02 0.28 16 43 H 0.25 14.02 8.31 -92.71 -0.77 13.25 16 44 H 0.05 2.66 6.29 -2.38 -0.02 2.64 16 45 H 0.01 0.47 6.49 -2.39 -0.02 0.46 16 46 H 0.07 2.41 8.14 -2.38 -0.02 2.39 16 47 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 48 H 0.10 1.59 7.31 -2.39 -0.02 1.57 16 49 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 50 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 51 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.07 2.66 7.43 -2.39 -0.02 2.65 16 53 H 0.08 1.85 6.85 -2.38 -0.02 1.83 16 Total: -1.00 -68.69 398.10 2.44 -66.26 By element: Atomic # 1 Polarization: 28.36 SS G_CDS: 0.46 Total: 28.82 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: 6.05 Total: 8.85 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -3.43 Total: -107.09 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -2.67 Total: -43.80 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -68.69 2.44 -66.26 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270243680.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.330 kcal (2) G-P(sol) polarization free energy of solvation -68.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds