Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42904 * 109.46810 * 2 1 4 4 C 1.42900 * 113.99555 * 180.02562 * 3 2 1 5 5 H 1.08995 * 109.47214 * 30.00131 * 4 3 2 6 6 C 1.50698 * 109.46818 * 150.00275 * 4 3 2 7 7 O 1.21286 * 120.00059 * 5.00053 * 6 4 3 8 8 N 1.34782 * 120.00290 * 185.00000 * 6 4 3 9 9 C 1.46493 * 120.00270 * 180.02562 * 8 6 4 10 10 C 1.53000 * 109.44809 * 299.96233 * 9 8 6 11 11 C 1.53045 * 109.45959 * 179.97438 * 9 8 6 12 12 C 1.53184 * 109.31045 * 301.34150 * 11 9 8 13 13 N 1.46928 * 108.89946 * 305.29664 * 12 11 9 14 14 C 1.36937 * 120.62751 * 233.68087 * 13 12 11 15 15 H 1.07999 * 120.00448 * 27.38666 * 14 13 12 16 16 C 1.38820 * 119.99269 * 207.39032 * 14 13 12 17 17 N 1.31613 * 120.00097 * 17.25596 * 16 14 13 18 18 Si 1.86807 * 119.99669 * 197.25602 * 16 14 13 19 19 H 1.48497 * 109.46957 * 60.00245 * 18 16 14 20 20 H 1.48494 * 109.47182 * 179.97438 * 18 16 14 21 21 H 1.48493 * 109.47157 * 300.00224 * 18 16 14 22 22 C 1.47200 * 118.55359 * 53.53256 * 13 12 11 23 23 C 1.53036 * 109.46195 * 59.92935 * 9 8 6 24 24 C 1.52995 * 109.47174 * 269.99915 * 4 3 2 25 25 H 1.08998 * 110.75478 * 299.30597 * 24 4 3 26 26 C 1.55305 * 110.84774 * 62.77292 * 24 4 3 27 27 C 1.55206 * 100.82735 * 152.17858 * 26 24 4 28 28 O 1.43650 * 105.26124 * 323.81692 * 27 26 24 29 29 C 1.43239 * 109.96804 * 24.28594 * 28 27 26 30 30 H 1.08998 * 109.47531 * 299.99394 * 1 2 3 31 31 H 1.08998 * 109.47587 * 60.00281 * 1 2 3 32 32 H 1.09004 * 109.47274 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46856 * 240.00609 * 2 1 3 34 34 H 1.08998 * 109.47031 * 120.00484 * 2 1 3 35 35 H 0.96996 * 119.99332 * 359.97438 * 8 6 4 36 36 H 1.08993 * 109.47268 * 300.03322 * 10 9 8 37 37 H 1.08997 * 109.46729 * 60.03703 * 10 9 8 38 38 H 1.09002 * 109.47334 * 180.02562 * 10 9 8 39 39 H 1.09004 * 109.49609 * 181.39446 * 11 9 8 40 40 H 1.09000 * 109.49498 * 61.29279 * 11 9 8 41 41 H 1.09005 * 109.58718 * 65.15681 * 12 11 9 42 42 H 1.09001 * 109.58894 * 185.43430 * 12 11 9 43 43 H 0.97008 * 119.99917 * 179.97438 * 17 16 14 44 44 H 1.09001 * 109.53557 * 186.67857 * 22 13 12 45 45 H 1.09002 * 109.67524 * 66.37760 * 22 13 12 46 46 H 1.09007 * 109.49849 * 178.60776 * 23 9 8 47 47 H 1.09005 * 109.50017 * 298.70517 * 23 9 8 48 48 H 1.09000 * 111.13128 * 270.24378 * 26 24 4 49 49 H 1.09008 * 111.12191 * 34.41003 * 26 24 4 50 50 H 1.09005 * 110.37180 * 204.80161 * 27 26 24 51 51 H 1.08996 * 110.21217 * 82.75553 * 27 26 24 52 52 H 1.08999 * 109.83030 * 238.77262 * 29 28 27 53 53 H 1.09007 * 109.82993 * 117.80045 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8630 0.6017 -0.5147 6 6 3.8341 2.7266 -0.7109 7 8 2.9854 3.5050 -1.0914 8 7 5.1378 2.9942 -0.9235 9 6 5.5298 4.2255 -1.6135 10 6 4.9163 4.2415 -3.0150 11 6 7.0552 4.2849 -1.7234 12 6 7.6666 4.2341 -0.3198 13 7 7.0807 5.3083 0.4937 14 6 7.8829 6.2076 1.1440 15 1 8.8640 6.4364 0.7547 16 6 7.4351 6.8251 2.3038 17 7 6.4155 6.3210 2.9662 18 14 8.2796 8.3714 2.9245 19 1 8.1853 9.4350 1.8925 20 1 7.6160 8.8316 4.1707 21 1 9.7081 8.0774 3.2032 22 6 5.6146 5.3976 0.5907 23 6 5.0267 5.4354 -0.8228 24 6 3.9398 1.5002 1.4417 25 1 3.5293 2.3592 1.9724 26 6 3.6016 0.1787 2.1841 27 6 4.7501 0.1279 3.2268 28 8 5.8994 0.6610 2.5497 29 6 5.4831 1.5171 1.4794 30 1 -0.3634 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 5.8165 2.3718 -0.6189 36 1 5.2737 3.3793 -3.5779 37 1 3.8300 4.1995 -2.9365 38 1 5.2082 5.1574 -3.5290 39 1 7.3487 5.2126 -2.2147 40 1 7.4112 3.4354 -2.3063 41 1 7.4498 3.2691 0.1385 42 1 8.7457 4.3729 -0.3859 43 1 6.1028 6.7523 3.7769 44 1 5.3394 6.3067 1.1255 45 1 5.2285 4.5290 1.1241 46 1 5.3393 6.3523 -1.3227 47 1 3.9386 5.4051 -0.7646 48 1 2.6278 0.2392 2.6701 49 1 3.6487 -0.6749 1.5078 50 1 4.9365 -0.9006 3.5361 51 1 4.5012 0.7431 4.0914 52 1 5.8801 1.1471 0.5341 53 1 5.8375 2.5323 1.6587 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001270243681.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -120.294386 kcal Electronic energy + Delta-G solvation = -33381.683642 eV Core-core repulsion = 29253.505027 eV Total energy + Delta-G solvation = -4128.178615 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.94914 -40.44882 -39.22854 -38.27048 -36.09172 -34.50859 -33.44505 -32.45846 -32.07285 -31.59455 -30.34043 -29.06228 -27.49103 -25.92129 -24.12579 -23.93194 -23.55756 -22.70286 -22.18602 -21.66391 -20.24344 -18.83126 -18.53265 -17.94468 -17.64981 -17.07992 -16.82881 -16.23183 -16.04687 -15.99944 -15.80243 -15.60354 -15.36154 -15.16999 -14.84817 -14.63119 -14.53924 -14.10850 -14.03415 -13.62772 -13.36387 -13.30129 -13.20590 -13.09424 -12.95704 -12.83088 -12.65315 -12.56739 -12.54681 -12.30525 -12.29499 -12.24683 -11.97620 -11.93967 -11.87572 -11.73888 -11.31693 -11.28853 -10.73252 -10.59034 -10.48312 -10.24254 -9.98167 -8.64518 -7.85296 -5.29110 1.45026 1.48067 1.53920 1.56314 1.89889 2.51573 2.73257 2.94458 3.29081 3.32683 3.48449 3.68388 3.73489 3.80082 3.86187 3.95684 4.06950 4.09453 4.14759 4.19018 4.23250 4.34284 4.44504 4.49178 4.54960 4.60878 4.68125 4.72847 4.76266 4.81145 4.81304 4.86322 4.88097 4.91457 4.97192 5.04365 5.04914 5.07836 5.14290 5.21086 5.29510 5.34699 5.37837 5.50796 5.63194 5.67265 5.78083 5.95931 6.11107 6.39338 6.61708 7.15969 7.28436 7.88706 8.40478 9.20264 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.004198 C = 0.003612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.891899 B = 6668.382557 C = 7749.043882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.035 3.965 3 O -0.379 6.379 4 C 0.097 3.903 5 H 0.120 0.880 6 C 0.509 3.491 7 O -0.554 6.554 8 N -0.704 5.704 9 C 0.186 3.814 10 C -0.150 4.150 11 C -0.125 4.125 12 C 0.139 3.861 13 N -0.604 5.604 14 C -0.260 4.260 15 H 0.070 0.930 16 C -0.050 4.050 17 N -0.932 5.932 18 Si 0.962 3.038 19 H -0.281 1.281 20 H -0.298 1.298 21 H -0.273 1.273 22 C 0.194 3.806 23 C -0.141 4.141 24 C -0.137 4.137 25 H 0.065 0.935 26 C -0.135 4.135 27 C 0.042 3.958 28 O -0.400 6.400 29 C 0.061 3.939 30 H 0.054 0.946 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.064 0.936 34 H 0.077 0.923 35 H 0.404 0.596 36 H 0.073 0.927 37 H 0.053 0.947 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.098 0.902 41 H 0.021 0.979 42 H 0.059 0.941 43 H 0.246 0.754 44 H 0.038 0.962 45 H -0.003 1.003 46 H 0.055 0.945 47 H 0.054 0.946 48 H 0.100 0.900 49 H 0.109 0.891 50 H 0.115 0.885 51 H 0.050 0.950 52 H 0.088 0.912 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.259 -18.603 -8.255 21.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.041 4.041 3 O -0.298 6.298 4 C 0.036 3.964 5 H 0.138 0.862 6 C 0.295 3.705 7 O -0.432 6.432 8 N -0.360 5.360 9 C 0.100 3.900 10 C -0.208 4.208 11 C -0.164 4.164 12 C 0.013 3.987 13 N -0.327 5.327 14 C -0.391 4.391 15 H 0.087 0.913 16 C -0.245 4.245 17 N -0.578 5.578 18 Si 0.790 3.210 19 H -0.207 1.207 20 H -0.225 1.225 21 H -0.199 1.199 22 C 0.068 3.932 23 C -0.180 4.180 24 C -0.156 4.156 25 H 0.083 0.917 26 C -0.172 4.172 27 C -0.034 4.034 28 O -0.319 6.319 29 C -0.016 4.016 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.243 0.757 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.039 0.961 42 H 0.078 0.922 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.015 0.985 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.119 0.881 49 H 0.127 0.873 50 H 0.133 0.867 51 H 0.068 0.932 52 H 0.106 0.894 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.824 -17.878 -8.329 20.870 hybrid contribution 0.415 1.180 1.091 1.660 sum -6.410 -16.698 -7.238 19.295 Atomic orbital electron populations 1.21761 0.93052 1.03522 1.02340 1.23116 0.96448 0.82360 1.02147 1.88065 1.18036 1.28813 1.94861 1.21768 0.84120 0.96525 0.94030 0.86226 1.20753 0.82760 0.87972 0.79025 1.90629 1.51349 1.49708 1.51515 1.46254 1.06693 1.23604 1.59444 1.20228 0.95069 0.83010 0.91643 1.22108 1.01447 1.02780 0.94473 1.22235 0.92200 1.03676 0.98296 1.21090 0.96873 0.90290 0.90407 1.44269 1.01255 1.31310 1.55898 1.19489 0.99890 1.16736 1.02937 0.91280 1.25731 0.99747 1.02832 0.96223 1.70194 1.30202 1.40253 1.17200 0.85425 0.78236 0.80459 0.76852 1.20687 1.22492 1.19876 1.20356 0.82885 0.98017 0.91948 1.22380 0.99831 0.97676 0.98159 1.23083 0.95527 1.00774 0.96243 0.91659 1.23478 1.00027 0.95733 0.97985 1.23662 0.84513 1.00254 0.94927 1.88414 1.31840 1.64466 1.47223 1.23205 0.92990 0.94308 0.91102 0.92656 0.93069 0.88312 0.91748 0.90458 0.75727 0.90778 0.92807 0.91261 0.90615 0.88322 0.96145 0.92246 0.94529 0.94323 0.98514 0.92674 0.92708 0.88128 0.87297 0.86708 0.93160 0.89443 0.93511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.98 0.74 -1.54 16 2 C 0.03 0.58 6.20 71.98 0.45 1.03 16 3 O -0.38 -10.15 9.48 -129.99 -1.23 -11.38 16 4 C 0.10 2.44 2.19 29.85 0.07 2.51 16 5 H 0.12 2.09 7.76 -2.39 -0.02 2.07 16 6 C 0.51 16.62 6.56 87.66 0.58 17.19 16 7 O -0.55 -22.56 12.73 15.94 0.20 -22.35 16 8 N -0.70 -21.13 3.64 -422.80 -1.54 -22.67 16 9 C 0.19 6.04 0.66 3.63 0.00 6.04 16 10 C -0.15 -4.23 8.40 71.98 0.60 -3.63 16 11 C -0.12 -3.73 4.96 30.67 0.15 -3.58 16 12 C 0.14 5.28 6.23 86.36 0.54 5.82 16 13 N -0.60 -29.78 3.01 -698.48 -2.10 -31.88 16 14 C -0.26 -14.32 9.59 84.04 0.81 -13.51 16 15 H 0.07 3.66 7.89 -2.91 -0.02 3.64 16 16 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 17 N -0.93 -56.73 11.18 21.65 0.24 -56.49 16 18 Si 0.96 45.95 29.59 68.60 2.03 47.98 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 21 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 22 C 0.19 9.75 5.07 86.29 0.44 10.18 16 23 C -0.14 -5.90 4.66 30.65 0.14 -5.76 16 24 C -0.14 -3.61 2.75 -9.53 -0.03 -3.63 16 25 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 26 C -0.14 -2.43 4.81 32.14 0.15 -2.28 16 27 C 0.04 0.92 7.78 72.74 0.57 1.48 16 28 O -0.40 -12.03 11.36 -148.98 -1.69 -13.72 16 29 C 0.06 1.78 5.76 72.45 0.42 2.19 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.10 0.92 8.14 -2.38 -0.02 0.90 16 33 H 0.06 0.86 8.08 -2.39 -0.02 0.84 16 34 H 0.08 0.96 4.89 -2.39 -0.01 0.95 16 35 H 0.40 10.60 4.18 -92.71 -0.39 10.21 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.77 6.17 -2.39 -0.01 1.76 16 38 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.02 0.76 6.69 -2.38 -0.02 0.75 16 42 H 0.06 2.21 7.93 -2.39 -0.02 2.19 16 43 H 0.25 14.70 8.31 -92.70 -0.77 13.93 16 44 H 0.04 2.28 6.04 -2.39 -0.01 2.26 16 45 H 0.00 -0.17 6.82 -2.39 -0.02 -0.18 16 46 H 0.05 2.33 8.14 -2.38 -0.02 2.31 16 47 H 0.05 2.48 6.20 -2.38 -0.01 2.46 16 48 H 0.10 1.60 7.79 -2.39 -0.02 1.58 16 49 H 0.11 1.33 7.01 -2.38 -0.02 1.31 16 50 H 0.11 1.79 8.14 -2.38 -0.02 1.77 16 51 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.09 2.04 6.00 -2.39 -0.01 2.02 16 53 H 0.05 1.84 6.97 -2.38 -0.02 1.82 16 Total: -1.00 -75.13 391.41 2.47 -72.66 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.52 Total: 27.77 kcal Atomic # 6 Polarization: 4.06 SS G_CDS: 6.04 Total: 10.10 kcal Atomic # 7 Polarization: -107.65 SS G_CDS: -3.40 Total: -111.04 kcal Atomic # 8 Polarization: -44.74 SS G_CDS: -2.72 Total: -47.46 kcal Atomic # 14 Polarization: 45.95 SS G_CDS: 2.03 Total: 47.98 kcal Total: -75.13 2.47 -72.66 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270243681.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.636 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.659 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds