Wall clock time and date at job start Sat Apr 11 2020 06:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42903 * 113.99971 * 2 1 4 4 C 1.53000 * 109.47267 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46972 * 65.00304 * 4 3 2 6 6 C 1.42895 * 114.00394 * 180.02562 * 5 4 3 7 7 N 1.46904 * 109.47495 * 79.99394 * 6 5 4 8 8 C 1.48047 * 111.00084 * 205.00638 * 7 6 5 9 9 C 1.53456 * 86.01993 * 222.73218 * 8 7 6 10 10 C 1.48048 * 111.00005 * 105.54230 * 7 6 5 11 11 C 1.52632 * 113.68952 * 268.90770 * 9 8 7 12 12 C 1.53187 * 109.35212 * 286.02589 * 11 9 8 13 13 C 1.53140 * 109.35167 * 300.91225 * 12 11 9 14 14 N 1.46899 * 109.08168 * 56.44783 * 13 12 11 15 15 C 1.34778 * 120.68711 * 124.67792 * 14 13 12 16 16 O 1.21277 * 119.99917 * 179.97438 * 15 14 13 17 17 C 1.50700 * 120.00097 * 359.97223 * 15 14 13 18 18 C 1.53001 * 109.47053 * 180.02562 * 17 15 14 19 19 C 1.50700 * 109.46887 * 180.02562 * 18 17 15 20 20 H 1.07994 * 120.00655 * 0.02562 * 19 18 17 21 21 C 1.37885 * 119.99983 * 179.97438 * 19 18 17 22 22 N 1.31514 * 119.99848 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 120.00149 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47129 * 89.99955 * 23 21 19 25 25 H 1.48498 * 109.47197 * 210.00628 * 23 21 19 26 26 H 1.48505 * 109.46831 * 330.00042 * 23 21 19 27 27 C 1.47117 * 118.62327 * 304.65290 * 14 13 12 28 28 H 1.08992 * 109.47170 * 299.99936 * 1 2 3 29 29 H 1.09006 * 109.47165 * 60.00365 * 1 2 3 30 30 H 1.09005 * 109.46914 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47042 * 59.99831 * 3 2 1 32 32 H 1.08999 * 109.47064 * 299.99575 * 3 2 1 33 33 H 1.08996 * 109.47383 * 305.00349 * 4 3 2 34 34 H 1.08996 * 109.47437 * 184.99576 * 4 3 2 35 35 H 1.09009 * 109.46724 * 319.99687 * 6 5 4 36 36 H 1.09000 * 109.47474 * 199.99989 * 6 5 4 37 37 H 1.09005 * 113.78524 * 108.45883 * 8 7 6 38 38 H 1.08992 * 113.78636 * 337.00742 * 8 7 6 39 39 H 1.09003 * 113.78187 * 22.99038 * 10 7 6 40 40 H 1.08999 * 113.78712 * 251.55389 * 10 7 6 41 41 H 1.09007 * 109.49006 * 45.98113 * 11 9 8 42 42 H 1.08994 * 109.49333 * 166.05526 * 11 9 8 43 43 H 1.08995 * 109.48647 * 180.95056 * 12 11 9 44 44 H 1.08996 * 109.49089 * 60.87916 * 12 11 9 45 45 H 1.09005 * 109.53997 * 296.56592 * 13 12 11 46 46 H 1.09000 * 109.53313 * 176.32607 * 13 12 11 47 47 H 1.08995 * 109.47731 * 300.00456 * 17 15 14 48 48 H 1.09006 * 109.46850 * 60.00890 * 17 15 14 49 49 H 1.09006 * 109.47202 * 299.99899 * 18 17 15 50 50 H 1.08994 * 109.47491 * 60.00485 * 18 17 15 51 51 H 0.96991 * 120.00228 * 179.97438 * 22 21 19 52 52 H 1.08999 * 109.63882 * 291.72101 * 27 14 13 53 53 H 1.09001 * 109.80362 * 171.20766 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 8 3.9658 0.5793 -1.2202 6 6 5.3821 0.4188 -1.3217 7 7 5.7960 -0.7690 -0.5628 8 6 7.2090 -0.6594 -0.1349 9 6 7.3373 -2.1311 -0.5500 10 6 6.1348 -1.8877 -1.4713 11 6 7.0540 -3.1146 0.5823 12 6 8.2346 -3.1187 1.5584 13 6 9.5095 -3.5205 0.8111 14 7 9.7134 -2.6033 -0.3182 15 6 10.8688 -1.9223 -0.4511 16 8 11.0241 -1.1687 -1.3886 17 6 11.9678 -2.0971 0.5651 18 6 13.1601 -1.2175 0.1833 19 6 14.2593 -1.3929 1.1992 20 1 14.1216 -2.0648 2.0334 21 6 15.4414 -0.6962 1.0631 22 7 15.6094 0.1217 0.0470 23 14 16.8042 -0.9141 2.3219 24 1 17.6971 -2.0222 1.8979 25 1 17.5889 0.3425 2.4244 26 1 16.2098 -1.2357 3.6443 27 6 8.6305 -2.4441 -1.3012 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8508 0.5686 0.8426 34 1 3.9784 2.1766 0.0901 35 1 5.8777 1.3005 -0.9154 36 1 5.6597 0.2960 -2.3686 37 1 7.3327 -0.4920 0.9351 38 1 7.8014 0.0226 -0.7448 39 1 6.4089 -1.5695 -2.4772 40 1 5.4044 -2.6967 -1.4638 41 1 6.1483 -2.8124 1.1084 42 1 6.9192 -4.1146 0.1703 43 1 8.0420 -3.8328 2.3590 44 1 8.3599 -2.1222 1.9818 45 1 9.4079 -4.5400 0.4389 46 1 10.3623 -3.4613 1.4873 47 1 11.6022 -1.8056 1.5496 48 1 12.2790 -3.1416 0.5876 49 1 13.5260 -1.5087 -0.8013 50 1 12.8488 -0.1732 0.1611 51 1 16.4407 0.6120 -0.0485 52 1 8.5110 -3.3678 -1.8674 53 1 8.8665 -1.6255 -1.9812 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271252441.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:39 Heat of formation + Delta-G solvation = -121.473941 kcal Electronic energy + Delta-G solvation = -30310.580531 eV Core-core repulsion = 26182.350767 eV Total energy + Delta-G solvation = -4128.229764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.08896 -40.50070 -39.26478 -38.15313 -37.15106 -35.59417 -33.54645 -32.99803 -31.99803 -30.95642 -28.30076 -27.37482 -27.21808 -26.85842 -26.27112 -23.97561 -23.46702 -23.27072 -22.46352 -19.96872 -19.27968 -18.79794 -18.09253 -17.76739 -17.62735 -17.21019 -17.02914 -16.69133 -16.46534 -16.38451 -16.27050 -16.01400 -15.53245 -15.05075 -14.88734 -14.77550 -14.55386 -14.21954 -14.15494 -14.03423 -13.78221 -13.54681 -13.37658 -13.16922 -13.14638 -12.81497 -12.65642 -12.50735 -12.40737 -12.12833 -12.03611 -11.92487 -11.86186 -11.81864 -11.57248 -11.39010 -11.32932 -11.28817 -10.89679 -10.63716 -10.57430 -10.56438 -9.95554 -9.48904 -8.17544 -6.31579 1.42435 1.45200 1.56030 1.70756 2.05551 2.43633 2.53098 2.87267 2.97091 3.15461 3.31982 3.56481 3.83388 3.87424 3.97609 4.02894 4.12273 4.17471 4.22269 4.27061 4.30048 4.35902 4.42428 4.44515 4.49419 4.52452 4.53719 4.56338 4.57554 4.62250 4.65101 4.69710 4.80349 4.83286 4.85295 4.86397 4.91065 5.03320 5.08954 5.13430 5.22468 5.38376 5.44956 5.48821 5.62921 5.64594 5.85396 5.89846 6.15991 6.17989 6.28846 6.44558 6.86884 7.29108 7.38773 8.95126 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.019253 B = 0.001949 C = 0.001894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.974454 B =14361.182065 C =14782.004878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.063 3.937 4 C 0.062 3.938 5 O -0.390 6.390 6 C 0.188 3.812 7 N -0.503 5.503 8 C 0.019 3.981 9 C -0.088 4.088 10 C 0.026 3.974 11 C -0.082 4.082 12 C -0.128 4.128 13 C 0.099 3.901 14 N -0.609 5.609 15 C 0.511 3.489 16 O -0.592 6.592 17 C -0.115 4.115 18 C 0.043 3.957 19 C -0.542 4.542 20 H 0.076 0.924 21 C -0.007 4.007 22 N -0.938 5.938 23 Si 0.974 3.026 24 H -0.272 1.272 25 H -0.287 1.287 26 H -0.255 1.255 27 C 0.124 3.876 28 H 0.054 0.946 29 H 0.047 0.953 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.076 0.924 40 H 0.101 0.899 41 H 0.075 0.925 42 H 0.084 0.916 43 H 0.103 0.897 44 H 0.055 0.945 45 H 0.090 0.910 46 H 0.092 0.908 47 H 0.101 0.899 48 H 0.102 0.898 49 H -0.019 1.019 50 H -0.020 1.020 51 H 0.262 0.738 52 H 0.084 0.916 53 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.275 -5.329 3.134 30.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C -0.014 4.014 4 C -0.014 4.014 5 O -0.305 6.305 6 C 0.022 3.978 7 N -0.232 5.232 8 C -0.109 4.109 9 C -0.089 4.089 10 C -0.103 4.103 11 C -0.119 4.119 12 C -0.166 4.166 13 C -0.023 4.023 14 N -0.342 5.342 15 C 0.302 3.698 16 O -0.472 6.472 17 C -0.155 4.155 18 C 0.006 3.994 19 C -0.580 4.580 20 H 0.094 0.906 21 C -0.204 4.204 22 N -0.578 5.578 23 Si 0.798 3.202 24 H -0.197 1.197 25 H -0.213 1.213 26 H -0.178 1.178 27 C 0.001 3.999 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.110 0.890 31 H 0.103 0.897 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.074 0.926 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.121 0.879 44 H 0.073 0.927 45 H 0.108 0.892 46 H 0.110 0.890 47 H 0.119 0.881 48 H 0.120 0.880 49 H -0.001 1.001 50 H -0.001 1.001 51 H 0.071 0.929 52 H 0.102 0.898 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -30.684 -5.065 2.896 31.234 hybrid contribution 1.574 1.116 -0.489 1.990 sum -29.110 -3.949 2.407 29.475 Atomic orbital electron populations 1.22901 0.79695 1.03633 1.00793 1.87949 1.21283 1.28515 1.95573 1.22675 0.91834 0.85048 1.01821 1.22645 0.93828 0.97487 0.87483 1.87969 1.22156 1.82118 1.38277 1.23852 0.82192 0.93603 0.98158 1.68172 1.19669 1.06193 1.29177 1.23849 0.88440 0.96738 1.01903 1.22287 0.93651 0.95551 0.97407 1.24007 0.95913 0.95421 0.94914 1.21183 0.98294 0.98253 0.94210 1.21904 0.93631 1.02647 0.98464 1.22032 0.99753 0.93054 0.87446 1.48236 1.14187 1.44270 1.27468 1.21332 0.83774 0.78525 0.86216 1.90630 1.81336 1.39724 1.35541 1.21620 0.93299 1.02741 0.97808 1.18686 0.92268 0.93413 0.95072 1.21708 1.00098 1.25744 1.10405 0.90555 1.26142 1.01752 0.94671 0.97884 1.70179 1.26792 1.28774 1.32042 0.85320 0.78212 0.77467 0.79242 1.19703 1.21262 1.17833 1.21570 0.85143 1.02283 0.90933 0.92765 0.93474 0.89023 0.89733 0.92308 0.92806 0.90558 0.91819 0.89401 0.89491 0.92609 0.90548 0.88048 0.90621 0.89788 0.87871 0.92658 0.89185 0.88964 0.88130 0.88012 1.00094 1.00107 0.92907 0.89756 0.91813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 11.01 113.37 1.25 1.56 16 2 O -0.41 -8.34 10.67 -144.35 -1.54 -9.88 16 3 C 0.06 0.97 6.32 71.98 0.45 1.43 16 4 C 0.06 1.12 6.19 71.98 0.45 1.57 16 5 O -0.39 -8.91 10.54 -144.35 -1.52 -10.43 16 6 C 0.19 3.86 6.05 127.69 0.77 4.63 16 7 N -0.50 -10.47 6.21 ******* -6.42 -16.89 16 8 C 0.02 0.43 6.80 86.23 0.59 1.01 16 9 C -0.09 -1.68 0.87 -52.05 -0.05 -1.73 16 10 C 0.03 0.48 7.10 86.22 0.61 1.09 16 11 C -0.08 -1.26 5.02 30.53 0.15 -1.11 16 12 C -0.13 -1.99 6.00 30.70 0.18 -1.81 16 13 C 0.10 1.89 6.29 86.35 0.54 2.43 16 14 N -0.61 -16.92 2.98 -819.34 -2.44 -19.36 16 15 C 0.51 20.14 7.70 87.66 0.68 20.81 16 16 O -0.59 -29.36 15.42 -3.02 -0.05 -29.41 16 17 C -0.12 -4.68 3.98 29.85 0.12 -4.56 16 18 C 0.04 2.43 4.26 29.85 0.13 2.56 16 19 C -0.54 -30.88 9.11 25.60 0.23 -30.65 16 20 H 0.08 3.94 7.74 -2.91 -0.02 3.92 16 21 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 22 N -0.94 -59.76 13.29 21.45 0.28 -59.47 16 23 Si 0.97 44.27 29.54 68.60 2.03 46.30 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 26 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 27 C 0.12 2.99 5.60 86.19 0.48 3.47 16 28 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.05 0.49 8.14 -2.38 -0.02 0.47 16 30 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 31 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.08 1.08 8.09 -2.39 -0.02 1.06 16 35 H 0.06 1.23 7.64 -2.38 -0.02 1.21 16 36 H 0.09 1.69 7.16 -2.39 -0.02 1.67 16 37 H 0.09 1.97 7.36 -2.38 -0.02 1.95 16 38 H 0.06 1.43 7.75 -2.39 -0.02 1.42 16 39 H 0.08 1.33 7.33 -2.39 -0.02 1.32 16 40 H 0.10 1.68 8.09 -2.39 -0.02 1.66 16 41 H 0.08 1.24 8.02 -2.38 -0.02 1.22 16 42 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.10 1.11 8.14 -2.39 -0.02 1.10 16 44 H 0.05 1.03 7.36 -2.39 -0.02 1.01 16 45 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 46 H 0.09 1.79 5.92 -2.39 -0.01 1.78 16 47 H 0.10 3.62 7.73 -2.39 -0.02 3.60 16 48 H 0.10 3.64 7.91 -2.38 -0.02 3.63 16 49 H -0.02 -1.24 8.10 -2.38 -0.02 -1.26 16 50 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 51 H 0.26 15.64 8.31 -92.72 -0.77 14.87 16 52 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 53 H 0.06 1.91 6.89 -2.39 -0.02 1.90 16 Total: -1.00 -80.55 418.65 -1.74 -82.29 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 0.86 Total: 16.09 kcal Atomic # 6 Polarization: -6.29 SS G_CDS: 7.06 Total: 0.77 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -8.58 Total: -95.72 kcal Atomic # 8 Polarization: -46.61 SS G_CDS: -3.11 Total: -49.72 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.30 kcal Total: -80.55 -1.74 -82.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252441.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.185 kcal (2) G-P(sol) polarization free energy of solvation -80.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds