Wall clock time and date at job start Sat Apr 11 2020 06:11:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 114.00221 * 2 1 4 4 C 1.52998 * 109.47233 * 180.02562 * 3 2 1 5 5 O 1.42890 * 109.47275 * 65.00097 * 4 3 2 6 6 C 1.42904 * 114.00017 * 184.97555 * 5 4 3 7 7 N 1.46895 * 109.47003 * 283.09834 * 6 5 4 8 8 C 1.48044 * 110.99904 * 204.11038 * 7 6 5 9 9 C 1.53506 * 86.04651 * 137.29051 * 8 7 6 10 10 C 1.48051 * 111.00227 * 303.55205 * 7 6 5 11 11 C 1.52680 * 113.56611 * 90.91231 * 9 8 7 12 12 C 1.53336 * 109.10977 * 73.78290 * 11 9 8 13 13 N 1.46875 * 108.76410 * 52.41331 * 12 11 9 14 14 C 1.34779 * 120.46938 * 124.45133 * 13 12 11 15 15 O 1.21287 * 119.99678 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00232 * 179.97438 * 14 13 12 17 17 C 1.52995 * 109.46904 * 179.97438 * 16 14 13 18 18 C 1.50697 * 109.47129 * 179.97438 * 17 16 14 19 19 H 1.08007 * 120.00035 * 0.02562 * 18 17 16 20 20 C 1.37872 * 120.00450 * 179.97438 * 18 17 16 21 21 N 1.31523 * 119.99694 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00268 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47195 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47501 * 120.00111 * 22 20 18 25 25 H 1.48513 * 109.46936 * 239.99966 * 22 20 18 26 26 C 1.46889 * 119.06658 * 304.72185 * 13 12 11 27 27 C 1.52677 * 113.56031 * 222.10376 * 9 8 7 28 28 H 1.09005 * 109.46966 * 60.00074 * 1 2 3 29 29 H 1.09001 * 109.47016 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46874 * 299.99943 * 1 2 3 31 31 H 1.09003 * 109.46857 * 59.99675 * 3 2 1 32 32 H 1.09003 * 109.47241 * 300.00427 * 3 2 1 33 33 H 1.08999 * 109.46857 * 304.99616 * 4 3 2 34 34 H 1.09000 * 109.46697 * 185.00210 * 4 3 2 35 35 H 1.09000 * 109.47060 * 163.09574 * 6 5 4 36 36 H 1.08997 * 109.46777 * 43.10323 * 6 5 4 37 37 H 1.09000 * 113.78099 * 23.00792 * 8 7 6 38 38 H 1.08998 * 113.88521 * 251.58513 * 8 7 6 39 39 H 1.08997 * 113.77775 * 108.41941 * 10 7 6 40 40 H 1.09004 * 113.77721 * 336.98794 * 10 7 6 41 41 H 1.09000 * 109.53131 * 313.89279 * 11 9 8 42 42 H 1.09004 * 109.59058 * 193.70787 * 11 9 8 43 43 H 1.08995 * 109.58565 * 292.62490 * 12 11 9 44 44 H 1.09005 * 109.58369 * 172.19677 * 12 11 9 45 45 H 1.08998 * 109.46731 * 299.99960 * 16 14 13 46 46 H 1.08997 * 109.46643 * 60.00062 * 16 14 13 47 47 H 1.08998 * 109.47665 * 300.00109 * 17 16 14 48 48 H 1.09006 * 109.47384 * 60.00384 * 17 16 14 49 49 H 0.97005 * 119.99288 * 179.97438 * 21 20 18 50 50 H 1.08997 * 109.58888 * 175.06206 * 26 13 12 51 51 H 1.09000 * 109.59060 * 295.49794 * 26 13 12 52 52 H 1.08999 * 109.53115 * 46.11467 * 27 9 8 53 53 H 1.09001 * 109.52886 * 166.32778 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2219 6 6 5.3685 0.3170 -1.2784 7 7 6.0906 1.5687 -1.5421 8 6 7.4064 1.3009 -2.1654 9 6 7.0857 2.4781 -3.0969 10 6 5.6070 2.2083 -2.7866 11 6 7.5845 3.8232 -2.5747 12 6 9.1081 3.8900 -2.7345 13 7 9.4517 3.5685 -4.1258 14 6 10.1842 4.4256 -4.8644 15 8 10.5640 5.4711 -4.3810 16 6 10.5313 4.0848 -6.2908 17 6 11.3616 5.2173 -6.8981 18 6 11.7092 4.8763 -8.3242 19 1 11.3713 3.9451 -8.7546 20 6 12.4577 5.7534 -9.0800 21 7 12.8687 6.8876 -8.5562 22 14 12.8879 5.3310 -10.8480 23 1 12.3110 4.0075 -11.1952 24 1 12.3311 6.3673 -11.7542 25 1 14.3644 5.2822 -11.0000 26 6 8.9809 2.3025 -4.7029 27 6 7.4612 2.2227 -4.5546 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8463 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8515 0.5682 0.8410 34 1 3.9785 2.1764 0.0890 35 1 5.5729 -0.3957 -2.0774 36 1 5.6987 -0.0996 -0.3268 37 1 7.4635 0.3394 -2.6758 38 1 8.2534 1.4822 -1.5037 39 1 5.0213 3.1119 -2.6175 40 1 5.1316 1.5152 -3.4808 41 1 7.3238 3.9246 -1.5212 42 1 7.1227 4.6302 -3.1437 43 1 9.5775 3.1685 -2.0659 44 1 9.4569 4.8945 -2.4946 45 1 11.1067 3.1594 -6.3135 46 1 9.6149 3.9572 -6.8670 47 1 10.7859 6.1426 -6.8753 48 1 12.2780 5.3454 -6.3218 49 1 13.3957 7.5046 -9.0879 50 1 9.2460 2.2614 -5.7593 51 1 9.4412 1.4669 -4.1757 52 1 7.1163 1.2324 -4.8517 53 1 6.9954 2.9773 -5.1884 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001271252896.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:45 Heat of formation + Delta-G solvation = -122.327977 kcal Electronic energy + Delta-G solvation = -29946.137515 eV Core-core repulsion = 25817.870717 eV Total energy + Delta-G solvation = -4128.266798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.03003 -40.61229 -39.27963 -38.17268 -36.99479 -35.59695 -33.48521 -32.74043 -32.01171 -31.18459 -28.60580 -27.53929 -27.20722 -26.93467 -24.95164 -24.61539 -23.64450 -23.14233 -22.27525 -20.38777 -19.12390 -18.65190 -17.97571 -17.83337 -17.48793 -17.08133 -16.85172 -16.73196 -16.60061 -16.40452 -16.34733 -16.07166 -15.16140 -15.07246 -14.99456 -14.82998 -14.68199 -14.19895 -14.12924 -13.98220 -13.78077 -13.33247 -13.19682 -13.13102 -13.04807 -12.85966 -12.83914 -12.57850 -12.42969 -12.19800 -12.12926 -12.06641 -11.92983 -11.70012 -11.47297 -11.43165 -11.34765 -11.26760 -10.74662 -10.65267 -10.58782 -10.56972 -9.71547 -9.53469 -8.17098 -6.31194 1.42928 1.44398 1.57668 1.71346 2.10458 2.44184 2.65638 2.84112 2.96186 3.16059 3.39979 3.60585 3.83477 3.94161 4.04983 4.09897 4.16845 4.18811 4.28922 4.31758 4.35126 4.45919 4.46682 4.49319 4.52025 4.52737 4.57168 4.58918 4.62076 4.65227 4.67077 4.72823 4.73973 4.85362 4.87182 4.88936 4.94474 5.03410 5.10028 5.14571 5.18872 5.29856 5.35719 5.49862 5.63293 5.71053 5.86213 6.01611 6.16394 6.18376 6.27668 6.45055 6.87553 7.30299 7.39312 8.95876 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.001698 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.673563 B =16485.746053 C =16899.010747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.060 3.940 4 C 0.068 3.932 5 O -0.394 6.394 6 C 0.191 3.809 7 N -0.514 5.514 8 C 0.024 3.976 9 C -0.081 4.081 10 C 0.030 3.970 11 C -0.093 4.093 12 C 0.110 3.890 13 N -0.610 5.610 14 C 0.508 3.492 15 O -0.593 6.593 16 C -0.115 4.115 17 C 0.042 3.958 18 C -0.540 4.540 19 H 0.077 0.923 20 C -0.007 4.007 21 N -0.938 5.938 22 Si 0.974 3.026 23 H -0.251 1.251 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.102 3.898 27 C -0.117 4.117 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.090 0.910 42 H 0.051 0.949 43 H 0.084 0.916 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.101 0.899 47 H -0.020 1.020 48 H -0.019 1.019 49 H 0.262 0.738 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.102 0.898 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.499 -19.159 18.263 35.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.017 4.017 4 C -0.009 4.009 5 O -0.310 6.310 6 C 0.026 3.974 7 N -0.244 5.244 8 C -0.104 4.104 9 C -0.082 4.082 10 C -0.099 4.099 11 C -0.131 4.131 12 C -0.012 4.012 13 N -0.343 5.343 14 C 0.299 3.701 15 O -0.474 6.474 16 C -0.155 4.155 17 C 0.004 3.996 18 C -0.578 4.578 19 H 0.095 0.905 20 C -0.205 4.205 21 N -0.579 5.579 22 Si 0.798 3.202 23 H -0.175 1.175 24 H -0.207 1.207 25 H -0.207 1.207 26 C -0.019 4.019 27 C -0.155 4.155 28 H 0.064 0.936 29 H 0.112 0.888 30 H 0.072 0.928 31 H 0.101 0.899 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.121 0.879 46 H 0.119 0.881 47 H -0.002 1.002 48 H -0.001 1.001 49 H 0.071 0.929 50 H 0.112 0.888 51 H 0.109 0.891 52 H 0.121 0.879 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -23.342 -18.399 19.002 35.277 hybrid contribution 0.426 0.444 -1.160 1.313 sum -22.916 -17.955 17.842 34.145 Atomic orbital electron populations 1.22905 0.79654 1.03696 1.00789 1.87899 1.21326 1.28579 1.95594 1.22705 0.92279 0.84970 1.01722 1.22590 0.93168 0.98415 0.86680 1.87971 1.23050 1.81320 1.38686 1.23876 0.79820 0.91654 1.02047 1.68691 1.04343 1.20696 1.30658 1.23963 0.92761 0.97935 0.95725 1.21895 0.95902 0.95310 0.95057 1.23698 0.95409 0.99754 0.90998 1.21487 0.93657 0.95797 1.02135 1.21599 0.96017 1.01628 0.81966 1.48223 1.52432 1.20634 1.13051 1.21395 0.76834 0.82749 0.89141 1.90635 1.55443 1.27192 1.74127 1.21621 1.02034 1.01337 0.90460 1.18700 0.93406 0.92800 0.94667 1.21737 1.33242 1.05176 0.97671 0.90484 1.26147 0.95769 0.94710 1.03848 1.70200 1.37772 1.11046 1.38833 0.85266 0.77813 0.78928 0.78180 1.17454 1.20715 1.20672 1.21913 0.95009 0.84546 1.00477 1.21825 0.94892 1.03545 0.95282 0.93619 0.88848 0.92784 0.89861 0.92696 0.92443 0.90596 0.90064 0.90730 0.89046 0.88883 0.90498 0.90390 0.89192 0.93002 0.89768 0.92006 0.87885 0.88085 1.00178 1.00071 0.92915 0.88831 0.89069 0.87943 0.92090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.01 10.67 -144.34 -1.54 -8.55 16 3 C 0.06 0.77 6.32 71.98 0.45 1.23 16 4 C 0.07 0.96 6.21 71.98 0.45 1.40 16 5 O -0.39 -6.91 9.90 -144.34 -1.43 -8.34 16 6 C 0.19 2.59 5.97 127.69 0.76 3.35 16 7 N -0.51 -7.21 6.20 ******* -6.40 -13.61 16 8 C 0.02 0.28 6.76 86.25 0.58 0.87 16 9 C -0.08 -1.20 0.77 -52.04 -0.04 -1.24 16 10 C 0.03 0.44 6.59 86.24 0.57 1.01 16 11 C -0.09 -1.81 5.22 30.60 0.16 -1.65 16 12 C 0.11 2.71 6.30 86.42 0.54 3.26 16 13 N -0.61 -17.14 2.95 -819.42 -2.42 -19.55 16 14 C 0.51 20.39 7.69 87.66 0.67 21.06 16 15 O -0.59 -30.17 15.37 -3.05 -0.05 -30.21 16 16 C -0.11 -4.70 3.97 29.85 0.12 -4.58 16 17 C 0.04 2.37 4.26 29.85 0.13 2.50 16 18 C -0.54 -30.90 9.11 25.60 0.23 -30.67 16 19 H 0.08 3.99 7.74 -2.91 -0.02 3.96 16 20 C -0.01 -0.44 5.46 84.65 0.46 0.02 16 21 N -0.94 -60.05 13.29 21.45 0.28 -59.76 16 22 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 23 H -0.25 -10.48 7.11 99.48 0.71 -9.77 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 26 C 0.10 1.91 6.20 86.27 0.53 2.44 16 27 C -0.12 -1.74 5.24 30.45 0.16 -1.59 16 28 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.77 8.01 -2.39 -0.02 0.76 16 34 H 0.08 1.00 8.13 -2.39 -0.02 0.98 16 35 H 0.08 0.94 7.53 -2.39 -0.02 0.92 16 36 H 0.07 0.91 7.91 -2.39 -0.02 0.89 16 37 H 0.09 0.77 7.49 -2.39 -0.02 0.75 16 38 H 0.09 1.11 7.40 -2.39 -0.02 1.10 16 39 H 0.08 1.27 8.09 -2.39 -0.02 1.25 16 40 H 0.08 1.10 7.87 -2.38 -0.02 1.09 16 41 H 0.09 1.62 8.01 -2.39 -0.02 1.60 16 42 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.08 1.70 7.49 -2.39 -0.02 1.68 16 44 H 0.06 1.93 6.98 -2.38 -0.02 1.91 16 45 H 0.10 3.68 7.91 -2.39 -0.02 3.66 16 46 H 0.10 3.65 7.71 -2.39 -0.02 3.63 16 47 H -0.02 -1.30 8.10 -2.39 -0.02 -1.32 16 48 H -0.02 -1.23 8.10 -2.38 -0.02 -1.25 16 49 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 50 H 0.09 1.78 5.89 -2.39 -0.01 1.77 16 51 H 0.09 1.29 8.07 -2.39 -0.02 1.27 16 52 H 0.10 1.03 8.12 -2.39 -0.02 1.01 16 53 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -80.87 418.17 -1.62 -82.49 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: 0.86 Total: 12.19 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: 7.04 Total: -1.07 kcal Atomic # 7 Polarization: -84.39 SS G_CDS: -8.53 Total: -92.93 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -3.02 Total: -47.10 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Total: -80.87 -1.62 -82.49 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001271252896.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.838 kcal (2) G-P(sol) polarization free energy of solvation -80.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds