Wall clock time and date at job start Sat Apr 11 2020 06:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42904 * 113.99886 * 2 1 4 4 C 1.52991 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47278 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47162 * 180.02562 * 5 4 3 7 7 C 1.48433 * 111.00381 * 66.04619 * 6 5 4 8 8 C 1.54161 * 111.96720 * 192.44898 * 7 6 5 9 9 O 1.40004 * 113.26822 * 318.69694 * 8 7 6 10 10 C 1.44619 * 112.93454 * 94.41014 * 9 8 7 11 11 C 1.46298 * 111.19822 * 280.77219 * 10 9 8 12 12 C 1.54596 * 112.56955 * 182.45672 * 11 10 9 13 13 C 1.51272 * 104.29099 * 145.12670 * 12 11 10 14 14 O 1.21285 * 124.93988 * 164.11879 * 13 12 11 15 15 N 1.34380 * 110.12885 * 344.27265 * 13 12 11 16 16 C 1.46496 * 124.34156 * 179.43417 * 15 13 12 17 17 C 1.53006 * 109.46995 * 269.69525 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.46742 * 111.31727 * 359.16430 * 15 13 12 27 27 C 1.44077 * 110.99793 * 297.90670 * 6 5 4 28 28 H 1.09002 * 109.46864 * 300.00144 * 1 2 3 29 29 H 1.08998 * 109.46805 * 59.99744 * 1 2 3 30 30 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47180 * 59.99524 * 3 2 1 32 32 H 1.09008 * 109.46780 * 299.99697 * 3 2 1 33 33 H 1.09002 * 109.47443 * 60.00348 * 4 3 2 34 34 H 1.08997 * 109.47537 * 299.99884 * 4 3 2 35 35 H 1.09000 * 109.46741 * 59.99674 * 5 4 3 36 36 H 1.08999 * 109.46681 * 300.00116 * 5 4 3 37 37 H 1.09001 * 108.98477 * 71.81009 * 7 6 5 38 38 H 1.09001 * 108.91899 * 313.04657 * 7 6 5 39 39 H 1.08998 * 108.72639 * 197.71762 * 8 7 6 40 40 H 1.09000 * 108.72285 * 79.67306 * 8 7 6 41 41 H 1.08996 * 109.13573 * 160.32801 * 10 9 8 42 42 H 1.09002 * 109.13422 * 41.21328 * 10 9 8 43 43 H 1.09007 * 110.47739 * 264.02770 * 12 11 10 44 44 H 1.08994 * 110.48137 * 26.65230 * 12 11 10 45 45 H 1.09001 * 109.47001 * 149.69823 * 16 15 13 46 46 H 1.09001 * 109.47464 * 29.69264 * 16 15 13 47 47 H 1.08998 * 109.46509 * 60.00302 * 17 16 15 48 48 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 49 49 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 50 50 H 1.09000 * 110.24733 * 136.16055 * 26 15 13 51 51 H 1.09003 * 110.24676 * 258.06059 * 26 15 13 52 52 H 1.08999 * 109.73279 * 99.90746 * 27 6 5 53 53 H 1.09011 * 109.73104 * 339.22872 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5825 0.0000 6 7 5.6222 2.4664 0.0000 7 6 6.1081 1.8630 -1.2661 8 6 7.5899 1.4476 -1.1755 9 8 8.3874 2.3853 -0.5085 10 6 8.5480 2.0895 0.8980 11 6 7.3716 2.5028 1.6632 12 6 7.5342 2.2564 3.1807 13 6 6.8010 3.4109 3.8272 14 8 6.4567 3.4517 4.9894 15 7 6.5835 4.3835 2.9257 16 6 5.8866 5.6389 3.2163 17 6 4.3899 5.4645 2.9511 18 6 3.6729 6.7558 3.2506 19 1 4.2292 7.6149 3.5953 20 6 2.3069 6.8406 3.0837 21 7 1.6296 5.7945 2.6636 22 14 1.4183 8.4413 3.4543 23 1 -0.0345 8.2721 3.1970 24 1 1.9537 9.5180 2.5828 25 1 1.6291 8.8064 4.8782 26 6 7.1391 4.0294 1.6145 27 6 6.0872 1.7986 1.1890 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8575 0.6436 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 3.8358 3.1239 0.8895 36 1 3.8365 3.1228 -0.8904 37 1 5.9917 2.5877 -2.0719 38 1 5.5063 0.9827 -1.4918 39 1 7.9781 1.3134 -2.1852 40 1 7.6548 0.4954 -0.6491 41 1 9.4236 2.6169 1.2763 42 1 8.6966 1.0169 1.0229 43 1 7.0804 1.3065 3.4636 44 1 8.5878 2.2748 3.4593 45 1 6.2794 6.4290 2.5764 46 1 6.0416 5.9070 4.2614 47 1 3.9972 4.6744 3.5911 48 1 4.2349 5.1965 1.9061 49 1 2.0910 4.9634 2.4707 50 1 6.4300 4.2778 0.8248 51 1 8.0823 4.5509 1.4512 52 1 6.3020 0.7539 0.9641 53 1 5.3258 1.8591 1.9667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001273474702.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:05 Heat of formation + Delta-G solvation = -116.520050 kcal Electronic energy + Delta-G solvation = -32553.502013 eV Core-core repulsion = 28425.487066 eV Total energy + Delta-G solvation = -4128.014947 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.13291 -39.02599 -38.05704 -36.83447 -36.05564 -34.57057 -32.85760 -32.12451 -30.07269 -28.93410 -27.70059 -27.06278 -26.20972 -25.73155 -24.15730 -23.73572 -22.21610 -21.59290 -20.64787 -19.58495 -18.89856 -17.01489 -16.85999 -16.57005 -16.32997 -16.20382 -15.96478 -15.88771 -15.45124 -15.11304 -14.76544 -14.36568 -14.19153 -13.90985 -13.79974 -13.71445 -13.39901 -13.12427 -12.92225 -12.73733 -12.58533 -12.32253 -12.18261 -12.06664 -11.85344 -11.76499 -11.57868 -11.20948 -11.09838 -11.05443 -10.86770 -10.80285 -10.73575 -10.60649 -10.27862 -10.06229 -10.02788 -9.84529 -9.67942 -9.30225 -8.64272 -8.31486 -8.24445 -7.93643 -6.36692 -4.04654 3.03136 3.41828 3.44623 3.47195 3.64174 3.64946 3.70281 3.86827 4.45781 4.51696 4.56138 4.58942 4.76691 4.79492 4.87901 4.89582 5.05061 5.10190 5.19852 5.21742 5.28872 5.34142 5.35608 5.38186 5.42037 5.44532 5.51161 5.52339 5.58932 5.62372 5.65704 5.69117 5.77598 5.80398 5.84216 6.02799 6.04936 6.07794 6.23696 6.35960 6.44136 6.73257 6.92391 7.00626 7.03687 7.12192 7.16201 7.38055 7.50323 7.80996 8.18842 8.45635 8.69578 8.87700 9.67013 11.04274 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007043 B = 0.004895 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3974.819546 B = 5718.976650 C = 8357.256239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.398 6.398 3 C 0.063 3.937 4 C -0.151 4.151 5 C 0.060 3.940 6 N -0.534 5.534 7 C 0.026 3.974 8 C 0.061 3.939 9 O -0.356 6.356 10 C 0.082 3.918 11 C -0.101 4.101 12 C -0.145 4.145 13 C 0.509 3.491 14 O -0.541 6.541 15 N -0.607 5.607 16 C 0.136 3.864 17 C 0.003 3.997 18 C -0.599 4.599 19 H 0.049 0.951 20 C 0.018 3.982 21 N -0.911 5.911 22 Si 1.068 2.932 23 H -0.283 1.283 24 H -0.288 1.288 25 H -0.288 1.288 26 C 0.121 3.879 27 C 0.073 3.927 28 H 0.044 0.956 29 H 0.040 0.960 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.087 0.913 40 H 0.045 0.955 41 H 0.095 0.905 42 H 0.057 0.943 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.008 0.992 48 H 0.012 0.988 49 H 0.267 0.733 50 H 0.110 0.890 51 H 0.059 0.941 52 H 0.043 0.957 53 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.928 -12.960 -10.507 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.317 6.317 3 C -0.014 4.014 4 C -0.191 4.191 5 C -0.067 4.067 6 N -0.256 5.256 7 C -0.102 4.102 8 C -0.017 4.017 9 O -0.273 6.273 10 C 0.006 3.994 11 C -0.103 4.103 12 C -0.186 4.186 13 C 0.296 3.704 14 O -0.419 6.419 15 N -0.340 5.340 16 C 0.015 3.985 17 C -0.035 4.035 18 C -0.638 4.638 19 H 0.067 0.933 20 C -0.186 4.186 21 N -0.548 5.548 22 Si 0.896 3.104 23 H -0.208 1.208 24 H -0.214 1.214 25 H -0.214 1.214 26 C -0.002 4.002 27 C -0.056 4.056 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.101 0.899 31 H 0.077 0.923 32 H 0.068 0.932 33 H 0.086 0.914 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.105 0.895 40 H 0.063 0.937 41 H 0.113 0.887 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.118 0.882 45 H 0.084 0.916 46 H 0.087 0.913 47 H 0.026 0.974 48 H 0.030 0.970 49 H 0.077 0.923 50 H 0.128 0.872 51 H 0.077 0.923 52 H 0.061 0.939 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.609 -11.677 -9.966 17.601 hybrid contribution 0.719 -1.526 0.046 1.688 sum 9.328 -13.203 -9.920 18.967 Atomic orbital electron populations 1.22725 0.81002 1.02373 1.00379 1.87815 1.19819 1.28513 1.95550 1.22483 0.93470 0.84376 1.01116 1.22209 0.94320 0.99775 1.02759 1.22227 0.85343 0.94738 1.04439 1.60646 1.09764 1.53951 1.01240 1.23254 0.95592 0.98799 0.92509 1.22336 0.90139 0.91321 0.97901 1.87854 1.68218 1.51094 1.20166 1.21501 0.96513 1.00037 0.81396 1.21078 0.96910 0.97854 0.94432 1.22402 1.02564 0.99539 0.94082 1.20618 0.79400 0.84580 0.85812 1.90710 1.53985 1.80539 1.16683 1.48571 1.55435 1.19125 1.10840 1.21591 0.94290 0.81981 1.00599 1.19493 0.90018 0.97747 0.96197 1.21932 0.94979 0.97526 1.49381 0.93269 1.25786 0.94877 1.03700 0.94192 1.70785 1.39115 1.02657 1.42215 0.83557 0.76107 0.74307 0.76394 1.20836 1.21428 1.21442 1.22125 0.99655 0.91927 0.86494 1.21791 0.96201 0.94795 0.92785 0.93702 0.94117 0.89919 0.92307 0.93156 0.91382 0.91327 0.89180 0.90263 0.90095 0.93416 0.89519 0.93668 0.88703 0.92448 0.88418 0.88192 0.91597 0.91287 0.97363 0.97015 0.92299 0.87238 0.92259 0.93853 0.90282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 101.05 1.11 1.47 16 2 O -0.40 -5.55 10.70 -35.23 -0.38 -5.92 16 3 C 0.06 0.85 5.94 37.15 0.22 1.07 16 4 C -0.15 -1.87 5.13 -26.73 -0.14 -2.01 16 5 C 0.06 0.81 5.09 -3.82 -0.02 0.79 16 6 N -0.53 -6.50 2.49 -234.23 -0.58 -7.08 16 7 C 0.03 0.25 5.78 -2.37 -0.01 0.24 16 8 C 0.06 0.53 6.05 37.76 0.23 0.76 16 9 O -0.36 -3.78 10.34 -32.93 -0.34 -4.12 16 10 C 0.08 0.76 4.90 33.97 0.17 0.93 16 11 C -0.10 -1.17 0.63 -155.57 -0.10 -1.27 16 12 C -0.14 -1.82 5.75 -26.76 -0.15 -1.97 16 13 C 0.51 9.45 7.88 -10.88 -0.09 9.36 16 14 O -0.54 -12.54 17.58 5.55 0.10 -12.44 16 15 N -0.61 -11.13 2.93 -172.43 -0.51 -11.63 16 16 C 0.14 2.95 5.87 -4.04 -0.02 2.93 16 17 C 0.00 0.08 4.61 -27.88 -0.13 -0.04 16 18 C -0.60 -17.10 9.11 -34.44 -0.31 -17.41 16 19 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 20 C 0.02 0.52 5.46 -17.82 -0.10 0.43 16 21 N -0.91 -27.50 13.65 55.43 0.76 -26.74 16 22 Si 1.07 25.38 29.90 -169.99 -5.08 20.30 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 25 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 26 C 0.12 1.77 6.08 -3.12 -0.02 1.75 16 27 C 0.07 0.88 3.13 -4.83 -0.02 0.86 16 28 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.64 8.14 -51.92 -0.42 0.21 16 33 H 0.07 0.77 6.31 -51.93 -0.33 0.44 16 34 H 0.07 0.89 7.04 -51.93 -0.37 0.53 16 35 H 0.09 1.52 7.80 -51.93 -0.40 1.12 16 36 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.05 0.43 5.99 -51.93 -0.31 0.12 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.05 0.35 6.58 -51.93 -0.34 0.00 16 41 H 0.09 0.79 8.12 -51.93 -0.42 0.37 16 42 H 0.06 0.43 7.48 -51.93 -0.39 0.04 16 43 H 0.10 1.13 7.86 -51.92 -0.41 0.72 16 44 H 0.10 1.02 7.95 -51.93 -0.41 0.61 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.07 1.60 7.92 -51.93 -0.41 1.19 16 47 H 0.01 0.23 8.01 -51.93 -0.42 -0.18 16 48 H 0.01 0.31 7.79 -51.93 -0.40 -0.10 16 49 H 0.27 7.99 7.22 -40.82 -0.29 7.70 16 50 H 0.11 1.79 6.37 -51.93 -0.33 1.46 16 51 H 0.06 0.81 7.94 -51.93 -0.41 0.39 16 52 H 0.04 0.45 6.91 -51.93 -0.36 0.09 16 53 H 0.08 1.15 6.85 -51.92 -0.36 0.80 16 LS Contribution 406.48 15.07 6.13 6.13 Total: -1.00 -34.15 406.48 -8.66 -42.81 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -9.37 Total: 0.84 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 0.62 Total: -2.12 kcal Atomic # 7 Polarization: -45.12 SS G_CDS: -0.33 Total: -45.45 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: -0.62 Total: -22.49 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.15 -8.66 -42.81 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474702.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.715 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds