Wall clock time and date at job start Sat Apr 11 2020 06:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42904 * 113.99886 * 2 1 4 4 C 1.52991 * 109.46943 * 179.97438 * 3 2 1 5 5 C 1.53009 * 109.47278 * 179.97438 * 4 3 2 6 6 N 1.46897 * 109.47162 * 180.02562 * 5 4 3 7 7 C 1.48433 * 111.00381 * 66.04619 * 6 5 4 8 8 C 1.54161 * 111.96720 * 192.44898 * 7 6 5 9 9 O 1.40004 * 113.26822 * 318.69694 * 8 7 6 10 10 C 1.44619 * 112.93454 * 94.41014 * 9 8 7 11 11 C 1.46298 * 111.19822 * 280.77219 * 10 9 8 12 12 C 1.54596 * 112.56955 * 182.45672 * 11 10 9 13 13 C 1.51272 * 104.29099 * 145.12670 * 12 11 10 14 14 O 1.21285 * 124.93988 * 164.11879 * 13 12 11 15 15 N 1.34380 * 110.12885 * 344.27265 * 13 12 11 16 16 C 1.46496 * 124.34156 * 179.43417 * 15 13 12 17 17 C 1.53006 * 109.46995 * 269.69525 * 16 15 13 18 18 C 1.50698 * 109.47184 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99819 * 0.02562 * 18 17 16 20 20 C 1.37875 * 120.00046 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00192 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99979 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47297 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47261 * 60.00310 * 22 20 18 25 25 H 1.48500 * 109.47454 * 300.00304 * 22 20 18 26 26 C 1.46742 * 111.31727 * 359.16430 * 15 13 12 27 27 C 1.44077 * 110.99793 * 297.90670 * 6 5 4 28 28 H 1.09002 * 109.46864 * 300.00144 * 1 2 3 29 29 H 1.08998 * 109.46805 * 59.99744 * 1 2 3 30 30 H 1.08995 * 109.47249 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47180 * 59.99524 * 3 2 1 32 32 H 1.09008 * 109.46780 * 299.99697 * 3 2 1 33 33 H 1.09002 * 109.47443 * 60.00348 * 4 3 2 34 34 H 1.08997 * 109.47537 * 299.99884 * 4 3 2 35 35 H 1.09000 * 109.46741 * 59.99674 * 5 4 3 36 36 H 1.08999 * 109.46681 * 300.00116 * 5 4 3 37 37 H 1.09001 * 108.98477 * 71.81009 * 7 6 5 38 38 H 1.09001 * 108.91899 * 313.04657 * 7 6 5 39 39 H 1.08998 * 108.72639 * 197.71762 * 8 7 6 40 40 H 1.09000 * 108.72285 * 79.67306 * 8 7 6 41 41 H 1.08996 * 109.13573 * 160.32801 * 10 9 8 42 42 H 1.09002 * 109.13422 * 41.21328 * 10 9 8 43 43 H 1.09007 * 110.47739 * 264.02770 * 12 11 10 44 44 H 1.08994 * 110.48137 * 26.65230 * 12 11 10 45 45 H 1.09001 * 109.47001 * 149.69823 * 16 15 13 46 46 H 1.09001 * 109.47464 * 29.69264 * 16 15 13 47 47 H 1.08998 * 109.46509 * 60.00302 * 17 16 15 48 48 H 1.08993 * 109.46955 * 299.99862 * 17 16 15 49 49 H 0.97001 * 119.99934 * 359.97438 * 21 20 18 50 50 H 1.09000 * 110.24733 * 136.16055 * 26 15 13 51 51 H 1.09003 * 110.24676 * 258.06059 * 26 15 13 52 52 H 1.08999 * 109.73279 * 99.90746 * 27 6 5 53 53 H 1.09011 * 109.73104 * 339.22872 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1578 2.5825 0.0000 6 7 5.6222 2.4664 0.0000 7 6 6.1081 1.8630 -1.2661 8 6 7.5899 1.4476 -1.1755 9 8 8.3874 2.3853 -0.5085 10 6 8.5480 2.0895 0.8980 11 6 7.3716 2.5028 1.6632 12 6 7.5342 2.2564 3.1807 13 6 6.8010 3.4109 3.8272 14 8 6.4567 3.4517 4.9894 15 7 6.5835 4.3835 2.9257 16 6 5.8866 5.6389 3.2163 17 6 4.3899 5.4645 2.9511 18 6 3.6729 6.7558 3.2506 19 1 4.2292 7.6149 3.5953 20 6 2.3069 6.8406 3.0837 21 7 1.6296 5.7945 2.6636 22 14 1.4183 8.4413 3.4543 23 1 -0.0345 8.2721 3.1970 24 1 1.9537 9.5180 2.5828 25 1 1.6291 8.8064 4.8782 26 6 7.1391 4.0294 1.6145 27 6 6.0872 1.7986 1.1890 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8901 33 1 3.8575 0.6436 -0.8891 34 1 3.8568 0.6440 0.8908 35 1 3.8358 3.1239 0.8895 36 1 3.8365 3.1228 -0.8904 37 1 5.9917 2.5877 -2.0719 38 1 5.5063 0.9827 -1.4918 39 1 7.9781 1.3134 -2.1852 40 1 7.6548 0.4954 -0.6491 41 1 9.4236 2.6169 1.2763 42 1 8.6966 1.0169 1.0229 43 1 7.0804 1.3065 3.4636 44 1 8.5878 2.2748 3.4593 45 1 6.2794 6.4290 2.5764 46 1 6.0416 5.9070 4.2614 47 1 3.9972 4.6744 3.5911 48 1 4.2349 5.1965 1.9061 49 1 2.0910 4.9634 2.4707 50 1 6.4300 4.2778 0.8248 51 1 8.0823 4.5509 1.4512 52 1 6.3020 0.7539 0.9641 53 1 5.3258 1.8591 1.9667 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273474702.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:04 Heat of formation + Delta-G solvation = -140.077865 kcal Electronic energy + Delta-G solvation = -32554.523557 eV Core-core repulsion = 28425.487066 eV Total energy + Delta-G solvation = -4129.036491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.25698 -40.22426 -39.09681 -37.75221 -37.48982 -36.35961 -34.63678 -33.11982 -31.63943 -30.10304 -28.84856 -27.99575 -27.23978 -27.10069 -25.80100 -24.89850 -23.55578 -23.17744 -21.59977 -20.71340 -20.26740 -19.03064 -17.98773 -17.61177 -17.53614 -17.29582 -17.06112 -16.91927 -16.58800 -16.33116 -15.86883 -15.66647 -15.50961 -15.21653 -15.14187 -14.85378 -14.78409 -14.67852 -14.35148 -14.09455 -13.79695 -13.52760 -13.49795 -13.46982 -13.09493 -12.80487 -12.72780 -12.71733 -12.38540 -12.18972 -12.11873 -12.08000 -11.94141 -11.88435 -11.82422 -11.68675 -11.47480 -11.02514 -10.77182 -10.75521 -10.57226 -10.47259 -9.59942 -9.14697 -8.72646 -6.42866 1.50014 1.56173 1.59296 1.78179 2.14799 2.53531 2.56407 2.73576 3.03453 3.13258 3.35937 3.54555 3.61942 3.72376 3.83589 3.98937 4.02202 4.13400 4.17495 4.19314 4.27545 4.30416 4.36895 4.39466 4.40933 4.43691 4.46778 4.55013 4.60767 4.64308 4.65304 4.71326 4.73348 4.76163 4.76841 4.82579 4.84673 4.95763 5.00894 5.06305 5.11623 5.17673 5.18911 5.28109 5.59376 5.94713 5.96225 6.07304 6.13033 6.19484 6.30585 6.40300 6.50954 7.17536 7.39505 8.67721 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007043 B = 0.004895 C = 0.003350 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3974.819546 B = 5718.976650 C = 8357.256239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.064 3.936 4 C -0.137 4.137 5 C 0.072 3.928 6 N -0.544 5.544 7 C 0.025 3.975 8 C 0.059 3.941 9 O -0.371 6.371 10 C 0.081 3.919 11 C -0.082 4.082 12 C -0.128 4.128 13 C 0.494 3.506 14 O -0.598 6.598 15 N -0.612 5.612 16 C 0.148 3.852 17 C 0.020 3.980 18 C -0.621 4.621 19 H 0.053 0.947 20 C -0.034 4.034 21 N -0.930 5.930 22 Si 1.118 2.882 23 H -0.282 1.282 24 H -0.263 1.263 25 H -0.274 1.274 26 C 0.118 3.882 27 C 0.074 3.926 28 H 0.035 0.965 29 H 0.052 0.948 30 H 0.106 0.894 31 H 0.028 0.972 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.112 0.888 44 H 0.138 0.862 45 H 0.082 0.918 46 H 0.049 0.951 47 H -0.035 1.035 48 H 0.000 1.000 49 H 0.253 0.747 50 H 0.090 0.910 51 H 0.079 0.921 52 H 0.070 0.930 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.091 -13.995 -12.309 22.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C -0.013 4.013 4 C -0.176 4.176 5 C -0.056 4.056 6 N -0.267 5.267 7 C -0.102 4.102 8 C -0.019 4.019 9 O -0.289 6.289 10 C 0.005 3.995 11 C -0.084 4.084 12 C -0.168 4.168 13 C 0.283 3.717 14 O -0.480 6.480 15 N -0.343 5.343 16 C 0.026 3.974 17 C -0.018 4.018 18 C -0.659 4.659 19 H 0.072 0.928 20 C -0.231 4.231 21 N -0.567 5.567 22 Si 0.939 3.061 23 H -0.207 1.207 24 H -0.188 1.188 25 H -0.199 1.199 26 C -0.004 4.004 27 C -0.054 4.054 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.125 0.875 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.058 0.942 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.081 0.919 41 H 0.130 0.870 42 H 0.107 0.893 43 H 0.130 0.870 44 H 0.155 0.845 45 H 0.101 0.899 46 H 0.068 0.932 47 H -0.017 1.017 48 H 0.018 0.982 49 H 0.062 0.938 50 H 0.108 0.892 51 H 0.097 0.903 52 H 0.088 0.912 53 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 10.818 -12.738 -11.813 20.465 hybrid contribution -0.013 -1.214 0.584 1.348 sum 10.805 -13.952 -11.229 20.916 Atomic orbital electron populations 1.22934 0.79640 1.04029 1.00529 1.87785 1.21406 1.28276 1.95568 1.22442 0.94408 0.84409 1.00091 1.22064 0.93287 0.98956 1.03255 1.21933 0.86853 0.94930 1.01907 1.60606 1.08503 1.55027 1.02555 1.23368 0.97075 0.98997 0.90741 1.22480 0.88657 0.91516 0.99225 1.87856 1.68321 1.52079 1.20628 1.21626 0.95215 1.02159 0.80535 1.21098 0.97991 0.95061 0.94274 1.22392 1.03707 0.96922 0.93791 1.21758 0.78877 0.85879 0.85154 1.90667 1.56360 1.81762 1.19255 1.48636 1.54828 1.18065 1.12727 1.21160 0.92038 0.84478 0.99758 1.19257 0.92798 0.95456 0.94267 1.22356 0.95751 0.98443 1.49337 0.92837 1.27424 0.96276 1.06306 0.93142 1.70909 1.39230 1.02836 1.43737 0.82938 0.74967 0.70846 0.77392 1.20737 1.18790 1.19941 1.22327 0.99538 0.94800 0.83733 1.21766 0.95494 0.96391 0.91795 0.94611 0.92936 0.87545 0.95319 0.92254 0.89203 0.92132 0.94165 0.90227 0.90446 0.92246 0.87532 0.91867 0.86972 0.89342 0.86964 0.84464 0.89950 0.93229 1.01685 0.98168 0.93810 0.89174 0.90323 0.91182 0.93927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.55 11.01 113.37 1.25 1.79 16 2 O -0.41 -11.52 10.70 -148.98 -1.59 -13.11 16 3 C 0.06 1.82 5.94 71.98 0.43 2.24 16 4 C -0.14 -3.44 5.13 30.59 0.16 -3.29 16 5 C 0.07 2.06 5.09 86.31 0.44 2.50 16 6 N -0.54 -13.09 2.49 -894.97 -2.22 -15.31 16 7 C 0.02 0.43 5.78 86.40 0.50 0.93 16 8 C 0.06 0.78 6.05 72.38 0.44 1.22 16 9 O -0.37 -6.42 10.34 -140.76 -1.46 -7.88 16 10 C 0.08 1.13 4.90 69.92 0.34 1.48 16 11 C -0.08 -1.73 0.63 -52.87 -0.03 -1.76 16 12 C -0.13 -2.94 5.75 30.57 0.18 -2.76 16 13 C 0.49 18.74 7.88 87.90 0.69 19.43 16 14 O -0.60 -29.10 17.58 -3.05 -0.05 -29.16 16 15 N -0.61 -23.11 2.93 -818.06 -2.40 -25.51 16 16 C 0.15 6.75 5.87 86.38 0.51 7.26 16 17 C 0.02 1.11 4.61 29.85 0.14 1.25 16 18 C -0.62 -36.80 9.11 25.60 0.23 -36.57 16 19 H 0.05 3.06 7.74 -2.91 -0.02 3.04 16 20 C -0.03 -2.00 5.46 84.65 0.46 -1.54 16 21 N -0.93 -58.72 13.65 21.45 0.29 -58.42 16 22 Si 1.12 51.41 29.90 68.60 2.05 53.46 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 H -0.26 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 26 C 0.12 3.37 6.08 86.84 0.53 3.90 16 27 C 0.07 1.72 3.13 87.16 0.27 1.99 16 28 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 31 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 1.89 6.31 -2.39 -0.02 1.88 16 34 H 0.06 1.62 7.04 -2.39 -0.02 1.61 16 35 H 0.04 1.54 7.80 -2.39 -0.02 1.52 16 36 H 0.08 2.20 8.12 -2.39 -0.02 2.18 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.06 0.90 5.99 -2.39 -0.01 0.88 16 39 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.06 0.64 6.58 -2.39 -0.02 0.62 16 41 H 0.11 1.27 8.12 -2.39 -0.02 1.25 16 42 H 0.09 0.79 7.48 -2.39 -0.02 0.77 16 43 H 0.11 2.34 7.86 -2.38 -0.02 2.33 16 44 H 0.14 2.22 7.95 -2.39 -0.02 2.20 16 45 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 46 H 0.05 2.43 7.92 -2.39 -0.02 2.41 16 47 H -0.04 -2.23 8.01 -2.39 -0.02 -2.25 16 48 H 0.00 0.00 7.79 -2.39 -0.02 -0.01 16 49 H 0.25 16.28 7.22 -92.71 -0.67 15.62 16 50 H 0.09 2.99 6.37 -2.39 -0.02 2.97 16 51 H 0.08 1.97 7.94 -2.39 -0.02 1.95 16 52 H 0.07 1.25 6.91 -2.39 -0.02 1.23 16 53 H 0.04 1.30 6.85 -2.38 -0.02 1.28 16 Total: -1.00 -80.25 406.48 2.12 -78.13 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: 0.97 Total: 19.72 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: 6.53 Total: -1.92 kcal Atomic # 7 Polarization: -94.92 SS G_CDS: -4.33 Total: -99.25 kcal Atomic # 8 Polarization: -47.04 SS G_CDS: -3.10 Total: -50.15 kcal Atomic # 14 Polarization: 51.41 SS G_CDS: 2.05 Total: 53.46 kcal Total: -80.25 2.12 -78.13 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273474702.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.948 kcal (2) G-P(sol) polarization free energy of solvation -80.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds