Wall clock time and date at job start Sat Apr 11 2020 06:12:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99769 * 2 1 4 4 C 1.53007 * 109.46855 * 180.02562 * 3 2 1 5 5 C 1.53000 * 109.46946 * 180.02562 * 4 3 2 6 6 C 1.53007 * 109.46946 * 180.02562 * 5 4 3 7 7 N 1.46899 * 109.46916 * 179.97438 * 6 5 4 8 8 C 1.48578 * 111.00345 * 307.41215 * 7 6 5 9 9 C 1.55038 * 103.28886 * 200.55872 * 8 7 6 10 10 C 1.54105 * 102.81348 * 37.01069 * 9 8 7 11 11 C 1.48032 * 110.99802 * 189.99697 * 7 6 5 12 12 C 1.52439 * 110.13074 * 97.58153 * 10 9 8 13 13 N 1.46203 * 109.85956 * 169.35063 * 12 10 9 14 14 C 1.46501 * 118.77424 * 162.38436 * 13 12 10 15 15 C 1.53000 * 109.46944 * 90.00293 * 14 13 12 16 16 C 1.50695 * 109.47020 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00342 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99989 * 180.02562 * 16 15 14 19 19 N 1.31518 * 119.99810 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00116 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47250 * 59.99641 * 20 18 16 22 22 H 1.48495 * 109.47037 * 179.97438 * 20 18 16 23 23 H 1.48502 * 109.46971 * 299.99653 * 20 18 16 24 24 C 1.33713 * 122.54298 * 342.31858 * 13 12 10 25 25 O 1.21285 * 118.73118 * 182.46031 * 24 13 12 26 26 C 1.50301 * 122.57233 * 2.53627 * 24 13 12 27 27 O 1.42575 * 110.07710 * 219.16854 * 10 9 8 28 28 H 1.09003 * 109.47088 * 299.99699 * 1 2 3 29 29 H 1.09004 * 109.47445 * 59.99586 * 1 2 3 30 30 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46700 * 60.00785 * 3 2 1 32 32 H 1.08992 * 109.47816 * 300.00380 * 3 2 1 33 33 H 1.09001 * 109.47177 * 60.00263 * 4 3 2 34 34 H 1.09003 * 109.47228 * 300.00199 * 4 3 2 35 35 H 1.09001 * 109.47236 * 59.99972 * 5 4 3 36 36 H 1.09003 * 109.47053 * 299.99979 * 5 4 3 37 37 H 1.08993 * 109.46849 * 59.99958 * 6 5 4 38 38 H 1.09002 * 109.46768 * 299.99605 * 6 5 4 39 39 H 1.09000 * 110.65556 * 319.01291 * 8 7 6 40 40 H 1.09007 * 110.65250 * 81.94006 * 8 7 6 41 41 H 1.09005 * 110.74750 * 278.67742 * 9 8 7 42 42 H 1.09007 * 110.74684 * 155.34386 * 9 8 7 43 43 H 1.09000 * 109.97979 * 26.41403 * 11 7 6 44 44 H 1.09002 * 110.01796 * 265.13794 * 11 7 6 45 45 H 1.09002 * 109.39388 * 289.44881 * 12 10 9 46 46 H 1.09000 * 109.39569 * 49.25967 * 12 10 9 47 47 H 1.09000 * 109.47060 * 209.99832 * 14 13 12 48 48 H 1.09002 * 109.47119 * 330.00441 * 14 13 12 49 49 H 1.09000 * 109.47128 * 300.00140 * 15 14 13 50 50 H 1.09002 * 109.47092 * 60.00131 * 15 14 13 51 51 H 0.96999 * 120.00005 * 180.02562 * 19 18 16 52 52 H 1.09001 * 109.40148 * 223.37643 * 26 24 13 53 53 H 1.09000 * 109.32935 * 103.59860 * 26 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 6 4.1577 2.5824 0.0000 6 6 5.6830 2.4616 -0.0013 7 7 6.2805 3.8036 -0.0013 8 6 5.7263 4.6332 -1.1023 9 6 6.7954 5.7408 -1.2867 10 6 8.1166 4.9828 -1.0530 11 6 7.7394 3.7347 -0.2424 12 6 8.7356 4.5837 -2.3876 13 7 10.0975 4.0952 -2.1772 14 6 10.7346 3.3054 -3.2339 15 6 11.4807 4.2393 -4.1890 16 6 12.1366 3.4269 -5.2756 17 1 12.0314 2.3521 -5.2845 18 6 12.8709 4.0558 -6.2586 19 7 12.9995 5.3646 -6.2476 20 14 13.6833 3.0488 -7.6060 21 1 12.6452 2.2991 -8.3580 22 1 14.4076 3.9552 -8.5329 23 1 14.6426 2.0917 -6.9986 24 6 10.7853 4.3424 -1.0575 25 8 11.9271 3.9419 -0.9743 26 6 10.1984 5.0958 0.1030 27 8 9.0248 5.7980 -0.3158 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6885 1.8465 -0.8898 33 1 3.8567 0.6439 -0.8909 34 1 3.8575 0.6435 0.8891 35 1 3.8364 3.1228 0.8904 36 1 3.8357 3.1239 -0.8896 37 1 6.0039 1.9214 -0.8919 38 1 6.0053 1.9200 0.8881 39 1 5.6223 4.0436 -2.0131 40 1 4.7678 5.0646 -0.8135 41 1 6.6663 6.5294 -0.5453 42 1 6.7580 6.1492 -2.2967 43 1 7.9812 2.8356 -0.8092 44 1 8.2747 3.7314 0.7071 45 1 8.1353 3.7967 -2.8441 46 1 8.7600 5.4499 -3.0488 47 1 11.4391 2.6033 -2.7881 48 1 9.9725 2.7548 -3.7856 49 1 10.7763 4.9415 -4.6348 50 1 12.2427 4.7899 -3.6374 51 1 13.5158 5.8071 -6.9393 52 1 10.9317 5.8087 0.4800 53 1 9.9368 4.3931 0.8942 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273526289.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:11 Heat of formation + Delta-G solvation = -145.369234 kcal Electronic energy + Delta-G solvation = -30493.388775 eV Core-core repulsion = 26364.122834 eV Total energy + Delta-G solvation = -4129.265942 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.27596 -40.19401 -38.97971 -38.15166 -37.05156 -35.48564 -35.09715 -32.78264 -32.00698 -29.97202 -29.62124 -28.66877 -27.34292 -26.42514 -26.15088 -24.25147 -23.50214 -22.60518 -21.91035 -21.26452 -19.61627 -18.82128 -18.72621 -17.66557 -17.36305 -17.23272 -17.20057 -16.84683 -16.63828 -16.36097 -16.07513 -15.72722 -15.69926 -15.45374 -15.00498 -14.68777 -14.62148 -14.38063 -14.31915 -14.09364 -13.66124 -13.56473 -13.36356 -13.09023 -12.90026 -12.85405 -12.69034 -12.62657 -12.52901 -12.48471 -12.21652 -12.09394 -12.01239 -11.94726 -11.76993 -11.70289 -11.52532 -11.49385 -11.30386 -10.61412 -10.60476 -10.43599 -9.76677 -9.42754 -8.25196 -6.38368 1.36907 1.41591 1.42535 1.49459 1.81412 2.38101 2.53226 2.68143 3.00487 3.07937 3.24523 3.38148 3.59432 3.66536 3.96614 3.99708 4.04951 4.09835 4.23671 4.26458 4.28097 4.31988 4.36568 4.39264 4.46324 4.51148 4.52876 4.54708 4.56036 4.62952 4.67771 4.73821 4.75045 4.85803 4.86271 4.88345 4.91412 4.96896 5.03986 5.07252 5.17924 5.32073 5.36034 5.39697 5.51762 5.73240 5.77867 5.85639 6.01615 6.12533 6.25705 6.37574 6.76227 7.01102 7.31166 8.86781 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011963 B = 0.002209 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.919127 B =12673.589288 C =14131.448768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.423 6.423 3 C 0.059 3.941 4 C -0.115 4.115 5 C -0.105 4.105 6 C 0.045 3.955 7 N -0.513 5.513 8 C 0.036 3.964 9 C -0.102 4.102 10 C 0.092 3.908 11 C 0.016 3.984 12 C 0.094 3.906 13 N -0.599 5.599 14 C 0.128 3.872 15 C 0.027 3.973 16 C -0.546 4.546 17 H 0.066 0.934 18 C 0.000 4.000 19 N -0.932 5.932 20 Si 0.972 3.028 21 H -0.259 1.259 22 H -0.282 1.282 23 H -0.270 1.270 24 C 0.471 3.529 25 O -0.590 6.590 26 C 0.058 3.942 27 O -0.360 6.360 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.092 0.908 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.076 0.924 39 H 0.057 0.943 40 H 0.110 0.890 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.051 0.949 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.070 0.930 47 H 0.057 0.943 48 H 0.089 0.911 49 H -0.003 1.003 50 H -0.026 1.026 51 H 0.264 0.736 52 H 0.140 0.860 53 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.394 -4.102 14.778 31.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.343 6.343 3 C -0.017 4.017 4 C -0.153 4.153 5 C -0.143 4.143 6 C -0.083 4.083 7 N -0.237 5.237 8 C -0.091 4.091 9 C -0.141 4.141 10 C 0.052 3.948 11 C -0.112 4.112 12 C -0.029 4.029 13 N -0.330 5.330 14 C 0.006 3.994 15 C -0.011 4.011 16 C -0.584 4.584 17 H 0.084 0.916 18 C -0.199 4.199 19 N -0.572 5.572 20 Si 0.795 3.205 21 H -0.183 1.183 22 H -0.208 1.208 23 H -0.195 1.195 24 C 0.259 3.741 25 O -0.472 6.472 26 C -0.021 4.021 27 O -0.278 6.278 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.128 0.872 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.069 0.931 44 H 0.106 0.894 45 H 0.120 0.880 46 H 0.088 0.912 47 H 0.076 0.924 48 H 0.107 0.893 49 H 0.016 0.984 50 H -0.008 1.008 51 H 0.073 0.927 52 H 0.158 0.842 53 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -26.812 -3.909 15.290 31.112 hybrid contribution 1.154 -0.656 -1.699 2.156 sum -25.658 -4.565 13.591 29.392 Atomic orbital electron populations 1.22902 0.79628 1.03658 1.00864 1.87834 1.21423 1.29395 1.95630 1.22630 0.93913 0.84132 1.01049 1.21431 0.93256 0.97703 1.02907 1.21444 0.93018 0.96158 1.03644 1.22355 0.95387 0.89350 1.01199 1.64918 1.01841 1.13357 1.43630 1.23411 0.98890 0.93764 0.93046 1.22524 0.88827 0.98460 1.04239 1.22448 0.91149 0.92162 0.89054 1.23420 0.91170 0.96361 1.00261 1.22354 0.81371 1.00835 0.98328 1.47734 1.15920 1.52649 1.16732 1.21526 0.96783 0.93582 0.87482 1.19142 0.93936 0.94756 0.93284 1.21500 1.32551 0.94098 1.10247 0.91599 1.26044 0.96828 0.96125 1.00864 1.70116 1.41600 1.10005 1.35439 0.85408 0.78754 0.78234 0.78082 1.18348 1.20754 1.19550 1.21683 0.86173 0.80731 0.85478 1.90728 1.19569 1.54397 1.82482 1.22866 0.88129 0.98081 0.93010 1.88124 1.29953 1.36672 1.73017 0.93095 0.93230 0.88915 0.92321 0.92481 0.91879 0.91501 0.90337 0.90617 0.94708 0.90581 0.92455 0.87184 0.88437 0.88531 0.93096 0.89404 0.88034 0.91159 0.92424 0.89297 0.98433 1.00801 0.92689 0.84249 0.86643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.82 10.70 -148.98 -1.59 -8.42 16 3 C 0.06 0.69 5.94 71.98 0.43 1.12 16 4 C -0.11 -1.36 5.58 30.60 0.17 -1.19 16 5 C -0.10 -1.07 4.87 30.60 0.15 -0.92 16 6 C 0.05 0.62 5.03 86.31 0.43 1.06 16 7 N -0.51 -8.19 5.40 -883.27 -4.77 -12.96 16 8 C 0.04 0.46 5.11 86.68 0.44 0.91 16 9 C -0.10 -1.65 6.34 31.67 0.20 -1.45 16 10 C 0.09 2.04 0.96 -10.43 -0.01 2.03 16 11 C 0.02 0.32 5.44 86.26 0.47 0.79 16 12 C 0.09 2.57 5.12 86.25 0.44 3.01 16 13 N -0.60 -22.08 2.80 -825.73 -2.31 -24.39 16 14 C 0.13 5.63 5.22 86.38 0.45 6.08 16 15 C 0.03 1.50 5.29 29.85 0.16 1.65 16 16 C -0.55 -31.97 9.11 25.60 0.23 -31.74 16 17 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.44 16 19 N -0.93 -58.44 13.29 21.45 0.28 -58.16 16 20 Si 0.97 45.09 29.54 68.60 2.03 47.11 16 21 H -0.26 -11.23 7.11 99.48 0.71 -10.53 16 22 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 23 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 24 C 0.47 17.87 7.42 87.70 0.65 18.52 16 25 O -0.59 -28.22 16.37 -3.05 -0.05 -28.27 16 26 C 0.06 1.56 6.43 71.11 0.46 2.02 16 27 O -0.36 -9.33 10.35 -148.98 -1.54 -10.87 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.08 0.66 6.79 -2.39 -0.02 0.65 16 37 H 0.03 0.52 7.81 -2.39 -0.02 0.50 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 0.69 7.99 -2.39 -0.02 0.67 16 40 H 0.11 1.02 7.67 -2.38 -0.02 1.00 16 41 H 0.10 1.57 8.07 -2.38 -0.02 1.55 16 42 H 0.10 1.39 7.69 -2.38 -0.02 1.37 16 43 H 0.05 1.08 7.02 -2.39 -0.02 1.07 16 44 H 0.09 1.78 6.08 -2.39 -0.01 1.76 16 45 H 0.10 2.34 7.83 -2.39 -0.02 2.33 16 46 H 0.07 2.07 7.93 -2.39 -0.02 2.06 16 47 H 0.06 2.73 7.29 -2.39 -0.02 2.71 16 48 H 0.09 3.40 7.94 -2.39 -0.02 3.38 16 49 H 0.00 -0.16 8.14 -2.39 -0.02 -0.17 16 50 H -0.03 -1.72 8.14 -2.39 -0.02 -1.74 16 51 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 52 H 0.14 3.47 8.14 -2.39 -0.02 3.45 16 53 H 0.12 2.46 6.47 -2.39 -0.02 2.45 16 Total: -1.00 -78.14 414.47 -0.71 -78.85 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: 0.86 Total: 13.28 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 6.39 Total: 3.81 kcal Atomic # 7 Polarization: -88.70 SS G_CDS: -6.80 Total: -95.50 kcal Atomic # 8 Polarization: -44.37 SS G_CDS: -3.19 Total: -47.56 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 2.03 Total: 47.11 kcal Total: -78.14 -0.71 -78.85 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273526289.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.520 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds