Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42897 * 114.00297 * 2 1 4 4 C 1.53000 * 109.47209 * 179.97438 * 3 2 1 5 5 O 1.42904 * 109.47012 * 65.00708 * 4 3 2 6 6 C 1.42893 * 114.00158 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47587 * 79.99351 * 6 5 4 8 8 C 1.46848 * 110.99528 * 30.64469 * 7 6 5 9 9 C 1.53148 * 109.45467 * 186.35277 * 8 7 6 10 10 C 1.52546 * 109.31555 * 301.74317 * 9 8 7 11 11 C 1.54123 * 110.08162 * 178.10710 * 10 9 8 12 12 C 1.54587 * 101.65242 * 94.64633 * 11 10 9 13 13 N 1.46816 * 105.49771 * 24.98292 * 12 11 10 14 14 C 1.46497 * 124.36519 * 163.07822 * 13 12 11 15 15 C 1.52999 * 109.47419 * 89.99965 * 14 13 12 16 16 C 1.50695 * 109.47492 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99919 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99889 * 179.97438 * 16 15 14 19 19 N 1.31516 * 119.99431 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00283 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.47138 * 89.99719 * 20 18 16 22 22 H 1.48490 * 109.47020 * 209.99959 * 20 18 16 23 23 H 1.48500 * 109.46771 * 329.99777 * 20 18 16 24 24 C 1.34577 * 111.27423 * 343.07929 * 13 12 11 25 25 O 1.21279 * 125.02761 * 180.68280 * 24 13 12 26 26 C 1.52534 * 110.49503 * 56.30212 * 10 9 8 27 27 C 1.46856 * 111.00029 * 154.99864 * 7 6 5 28 28 H 1.08999 * 109.47051 * 299.99896 * 1 2 3 29 29 H 1.08997 * 109.46827 * 60.00067 * 1 2 3 30 30 H 1.08997 * 109.47092 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46950 * 60.00335 * 3 2 1 32 32 H 1.08994 * 109.47244 * 300.00343 * 3 2 1 33 33 H 1.09000 * 109.47627 * 305.00225 * 4 3 2 34 34 H 1.08999 * 109.47276 * 185.00000 * 4 3 2 35 35 H 1.09002 * 109.47193 * 319.99339 * 6 5 4 36 36 H 1.09004 * 109.47304 * 199.99748 * 6 5 4 37 37 H 1.08993 * 109.47670 * 66.35821 * 8 7 6 38 38 H 1.09000 * 109.47717 * 306.34412 * 8 7 6 39 39 H 1.08995 * 109.50057 * 181.79160 * 9 8 7 40 40 H 1.09004 * 109.49740 * 61.69595 * 9 8 7 41 41 H 1.09006 * 110.99217 * 212.73806 * 11 10 9 42 42 H 1.08997 * 110.99506 * 336.55519 * 11 10 9 43 43 H 1.09007 * 110.24006 * 143.98669 * 12 11 10 44 44 H 1.08997 * 110.24553 * 265.88778 * 12 11 10 45 45 H 1.09000 * 109.47425 * 209.99815 * 14 13 12 46 46 H 1.09003 * 109.47011 * 329.99982 * 14 13 12 47 47 H 1.09000 * 109.46700 * 300.00295 * 15 14 13 48 48 H 1.09003 * 109.47015 * 60.00019 * 15 14 13 49 49 H 0.97003 * 119.99660 * 180.02562 * 19 18 16 50 50 H 1.09005 * 109.50034 * 63.63887 * 26 10 9 51 51 H 1.08999 * 109.49847 * 183.70520 * 26 10 9 52 52 H 1.09007 * 109.47545 * 53.65419 * 27 7 6 53 53 H 1.08997 * 109.47945 * 293.63623 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3821 0.4186 -1.3217 7 7 5.7960 -0.7692 -0.5628 8 6 4.7361 -1.7856 -0.5571 9 6 5.1379 -2.9363 0.3701 10 6 6.4605 -3.5292 -0.1054 11 6 6.9056 -4.6590 0.8437 12 6 6.3444 -5.9083 0.1269 13 7 6.2388 -5.5339 -1.2888 14 6 6.0944 -6.4908 -2.3887 15 6 4.6090 -6.7522 -2.6456 16 6 4.4604 -7.7370 -3.7765 17 1 5.3377 -8.1362 -4.2637 18 6 3.2044 -8.1283 -4.1893 19 7 3.0748 -8.9874 -5.1767 20 14 1.6869 -7.4373 -3.3473 21 1 1.2571 -6.1970 -4.0417 22 1 0.5921 -8.4391 -3.4002 23 1 2.0055 -7.1264 -1.9305 24 6 6.2919 -4.1984 -1.4460 25 8 6.2157 -3.6190 -2.5087 26 6 7.5356 -2.4493 -0.1748 27 6 7.0557 -1.3146 -1.0846 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.6887 1.8463 0.8900 32 1 1.6887 1.8463 -0.8899 33 1 3.8509 0.5684 0.8426 34 1 3.9786 2.1764 0.0902 35 1 5.8778 1.3002 -0.9154 36 1 5.6598 0.2958 -2.3686 37 1 4.5927 -2.1667 -1.5681 38 1 3.8071 -1.3399 -0.2016 39 1 4.3663 -3.7059 0.3503 40 1 5.2521 -2.5611 1.3871 41 1 7.9925 -4.7044 0.9141 42 1 6.4568 -4.5401 1.8299 43 1 7.0277 -6.7494 0.2446 44 1 5.3622 -6.1624 0.5253 45 1 6.5523 -6.0813 -3.2891 46 1 6.5874 -7.4262 -2.1236 47 1 4.1511 -7.1617 -1.7452 48 1 4.1160 -5.8169 -2.9107 49 1 2.1912 -9.2625 -5.4674 50 1 7.7242 -2.0588 0.8252 51 1 8.4541 -2.8757 -0.5781 52 1 7.8091 -0.5272 -1.1116 53 1 6.8957 -1.6993 -2.0918 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273995562.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -144.662704 kcal Electronic energy + Delta-G solvation = -31855.448099 eV Core-core repulsion = 27726.212795 eV Total energy + Delta-G solvation = -4129.235304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.21660 -39.98906 -38.77098 -37.71229 -37.50302 -35.82021 -34.48455 -32.50962 -31.87588 -31.19978 -29.95328 -27.51382 -27.18829 -26.73879 -24.77914 -24.12010 -23.49705 -23.24328 -22.10964 -21.53095 -19.60198 -19.08798 -18.17354 -17.78768 -17.31202 -17.10847 -17.00575 -16.83525 -16.38909 -16.32538 -16.09105 -15.44086 -15.40829 -15.26506 -14.91392 -14.77755 -14.69138 -14.53127 -14.27757 -14.18642 -13.64829 -13.41343 -13.39466 -13.17373 -13.06201 -13.03665 -12.85762 -12.60574 -12.57438 -12.33332 -12.20856 -12.07500 -12.05021 -11.91407 -11.80645 -11.56001 -11.31397 -11.23206 -10.87271 -10.86464 -10.64727 -10.45734 -9.57664 -9.23920 -8.38707 -6.43123 1.25572 1.28288 1.38907 1.65083 2.15543 2.26756 2.69574 2.84971 2.94584 2.96245 3.32881 3.52248 3.73889 4.00833 4.04356 4.07931 4.23306 4.25120 4.27673 4.31044 4.33250 4.39135 4.44697 4.46839 4.49817 4.54470 4.56096 4.56753 4.60922 4.68946 4.72294 4.74777 4.81520 4.82320 4.83636 4.94404 4.98030 5.03926 5.10130 5.14623 5.16358 5.23832 5.26307 5.35190 5.45751 5.72974 5.76011 6.02965 6.15760 6.22827 6.32167 6.41232 6.62878 7.20952 7.28176 8.77678 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.008897 B = 0.003777 C = 0.002949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3146.343537 B = 7411.860470 C = 9492.942829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.416 6.416 3 C 0.057 3.943 4 C 0.060 3.940 5 O -0.404 6.404 6 C 0.222 3.778 7 N -0.543 5.543 8 C 0.062 3.938 9 C -0.086 4.086 10 C -0.089 4.089 11 C -0.106 4.106 12 C 0.089 3.911 13 N -0.623 5.623 14 C 0.148 3.852 15 C -0.012 4.012 16 C -0.533 4.533 17 H 0.042 0.958 18 C 0.014 3.986 19 N -0.943 5.943 20 Si 0.943 3.057 21 H -0.281 1.281 22 H -0.271 1.271 23 H -0.250 1.250 24 C 0.505 3.495 25 O -0.576 6.576 26 C -0.081 4.081 27 C 0.042 3.958 28 H 0.061 0.939 29 H 0.043 0.957 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.049 0.951 37 H -0.006 1.006 38 H 0.084 0.916 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.105 0.895 42 H 0.123 0.877 43 H 0.098 0.902 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.090 0.910 47 H 0.027 0.973 48 H -0.009 1.009 49 H 0.269 0.731 50 H 0.110 0.890 51 H 0.071 0.929 52 H 0.094 0.906 53 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.800 22.462 22.403 32.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.336 6.336 3 C -0.019 4.019 4 C -0.016 4.016 5 O -0.321 6.321 6 C 0.058 3.942 7 N -0.274 5.274 8 C -0.066 4.066 9 C -0.124 4.124 10 C -0.092 4.092 11 C -0.144 4.144 12 C -0.033 4.033 13 N -0.355 5.355 14 C 0.026 3.974 15 C -0.050 4.050 16 C -0.571 4.571 17 H 0.060 0.940 18 C -0.184 4.184 19 N -0.583 5.583 20 Si 0.767 3.233 21 H -0.207 1.207 22 H -0.196 1.196 23 H -0.173 1.173 24 C 0.294 3.706 25 O -0.456 6.456 26 C -0.119 4.119 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.062 0.938 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.110 0.890 35 H 0.117 0.883 36 H 0.067 0.933 37 H 0.012 0.988 38 H 0.102 0.898 39 H 0.074 0.926 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.141 0.859 43 H 0.116 0.884 44 H 0.089 0.911 45 H 0.066 0.934 46 H 0.108 0.892 47 H 0.045 0.955 48 H 0.009 0.991 49 H 0.078 0.922 50 H 0.128 0.872 51 H 0.090 0.910 52 H 0.112 0.888 53 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 4.661 22.534 22.019 31.848 hybrid contribution -1.244 -0.299 -1.783 2.194 sum 3.417 22.235 20.236 30.258 Atomic orbital electron populations 1.22860 0.79904 1.03249 1.00882 1.87939 1.21114 1.28935 1.95583 1.22772 0.92344 0.84883 1.01885 1.22780 0.93343 0.98457 0.87002 1.88032 1.22527 1.82097 1.39410 1.23335 0.80798 0.93735 0.96366 1.62537 1.04102 1.07044 1.53760 1.21841 0.95429 0.92398 0.96957 1.21422 0.94087 0.96087 1.00834 1.21132 0.98906 0.97206 0.91995 1.22763 1.03221 0.89601 0.98780 1.22445 1.02399 0.99934 0.78485 1.48733 1.71270 1.06588 1.08886 1.21127 0.96686 0.91614 0.87974 1.19715 0.94817 0.94537 0.95949 1.21280 0.93433 1.25193 1.17244 0.94001 1.25858 1.02382 0.94805 0.95330 1.70032 1.24742 1.34330 1.29168 0.85766 0.78976 0.78166 0.80383 1.20662 1.19562 1.17324 1.21558 0.74666 0.82787 0.91567 1.90615 1.52474 1.69094 1.33394 1.21375 0.95599 0.92884 1.02062 1.22257 0.91245 0.97814 0.97224 0.92026 0.93833 0.89886 0.89059 0.92836 0.91905 0.89023 0.88272 0.93277 0.98807 0.89786 0.92608 0.86961 0.87701 0.85889 0.88402 0.91082 0.93384 0.89209 0.95455 0.99068 0.92206 0.87166 0.91003 0.88809 0.95600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.42 -9.92 10.67 -144.35 -1.54 -11.46 16 3 C 0.06 0.98 6.32 71.98 0.45 1.43 16 4 C 0.06 1.06 5.53 71.98 0.40 1.46 16 5 O -0.40 -10.40 8.81 -144.35 -1.27 -11.67 16 6 C 0.22 5.10 6.51 127.69 0.83 5.93 16 7 N -0.54 -13.12 4.85 ******* -4.92 -18.04 16 8 C 0.06 1.84 4.78 86.36 0.41 2.26 16 9 C -0.09 -2.09 4.77 30.49 0.15 -1.94 16 10 C -0.09 -2.12 0.55 -52.83 -0.03 -2.15 16 11 C -0.11 -1.68 6.21 31.51 0.20 -1.49 16 12 C 0.09 2.05 7.36 86.86 0.64 2.68 16 13 N -0.62 -21.81 2.94 -818.08 -2.40 -24.22 16 14 C 0.15 6.36 5.87 86.38 0.51 6.86 16 15 C -0.01 -0.60 4.36 29.85 0.13 -0.47 16 16 C -0.53 -32.34 9.66 25.60 0.25 -32.09 16 17 H 0.04 2.73 7.99 -2.91 -0.02 2.70 16 18 C 0.01 0.87 5.47 84.65 0.46 1.33 16 19 N -0.94 -60.77 13.96 21.45 0.30 -60.48 16 20 Si 0.94 47.41 27.47 68.60 1.88 49.29 16 21 H -0.28 -14.25 7.11 99.48 0.71 -13.54 16 22 H -0.27 -12.81 7.11 99.48 0.71 -12.11 16 23 H -0.25 -11.74 6.54 99.48 0.65 -11.09 16 24 C 0.51 18.34 6.32 87.71 0.55 18.90 16 25 O -0.58 -26.53 13.85 -3.03 -0.04 -26.57 16 26 C -0.08 -1.62 4.77 30.49 0.15 -1.47 16 27 C 0.04 1.02 5.07 86.36 0.44 1.46 16 28 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.16 7.69 -2.39 -0.02 1.14 16 34 H 0.09 1.05 8.09 -2.39 -0.02 1.03 16 35 H 0.10 1.59 7.93 -2.39 -0.02 1.58 16 36 H 0.05 1.29 7.86 -2.38 -0.02 1.28 16 37 H -0.01 -0.27 6.68 -2.39 -0.02 -0.28 16 38 H 0.08 2.59 5.94 -2.39 -0.01 2.57 16 39 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.10 1.24 7.89 -2.38 -0.02 1.22 16 42 H 0.12 1.21 7.87 -2.39 -0.02 1.19 16 43 H 0.10 1.85 8.14 -2.38 -0.02 1.83 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.05 2.29 7.94 -2.39 -0.02 2.27 16 46 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 47 H 0.03 1.33 7.20 -2.39 -0.02 1.32 16 48 H -0.01 -0.51 7.57 -2.39 -0.02 -0.53 16 49 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 50 H 0.11 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.09 1.76 8.12 -2.38 -0.02 1.74 16 53 H 0.03 0.87 5.78 -2.39 -0.01 0.86 16 Total: -1.00 -83.74 408.40 -0.40 -84.14 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.81 Total: 14.56 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.78 Total: 4.43 kcal Atomic # 7 Polarization: -95.71 SS G_CDS: -7.02 Total: -102.73 kcal Atomic # 8 Polarization: -46.85 SS G_CDS: -2.85 Total: -49.70 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 1.88 Total: 49.29 kcal Total: -83.74 -0.40 -84.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273995562.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.521 kcal (2) G-P(sol) polarization free energy of solvation -83.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds