Wall clock time and date at job start Sat Apr 11 2020 06:12:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42894 * 114.00202 * 2 1 4 4 C 1.53007 * 109.47098 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.46880 * 65.00244 * 4 3 2 6 6 C 1.42898 * 113.99969 * 180.02562 * 5 4 3 7 7 N 1.46901 * 109.47456 * 79.99408 * 6 5 4 8 8 C 1.46984 * 110.99743 * 30.60588 * 7 6 5 9 9 C 1.53039 * 109.47089 * 184.60494 * 8 7 6 10 10 C 1.53126 * 109.38565 * 300.23135 * 9 8 7 11 11 C 1.53248 * 109.06837 * 58.25597 * 10 9 8 12 12 C 1.45969 * 110.99896 * 154.99927 * 7 6 5 13 13 C 1.53969 * 110.70475 * 52.61621 * 12 7 6 14 14 C 1.51438 * 104.11030 * 265.78665 * 13 12 7 15 15 O 1.21282 * 124.94143 * 164.54568 * 14 13 12 16 16 N 1.34487 * 110.11525 * 344.64983 * 14 13 12 17 17 C 1.46500 * 124.35284 * 179.49217 * 16 14 13 18 18 C 1.52997 * 109.47473 * 269.70185 * 17 16 14 19 19 C 1.50701 * 109.47212 * 179.97438 * 18 17 16 20 20 H 1.07998 * 120.00129 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99861 * 179.97438 * 19 18 17 22 22 N 1.31512 * 119.99594 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99875 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47061 * 90.00257 * 23 21 19 25 25 H 1.48497 * 109.46906 * 209.99430 * 23 21 19 26 26 H 1.48498 * 109.47403 * 329.99876 * 23 21 19 27 27 C 1.46916 * 111.29812 * 359.22837 * 16 14 13 28 28 H 1.08996 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47253 * 300.00581 * 1 2 3 30 30 H 1.09004 * 109.46427 * 60.00050 * 1 2 3 31 31 H 1.09007 * 109.47280 * 59.99607 * 3 2 1 32 32 H 1.09001 * 109.47384 * 299.99580 * 3 2 1 33 33 H 1.08999 * 109.46850 * 304.99825 * 4 3 2 34 34 H 1.09001 * 109.46946 * 185.00193 * 4 3 2 35 35 H 1.08998 * 109.46640 * 319.99644 * 6 5 4 36 36 H 1.08997 * 109.47141 * 199.99656 * 6 5 4 37 37 H 1.09001 * 109.47044 * 304.60611 * 8 7 6 38 38 H 1.09001 * 109.47314 * 64.60206 * 8 7 6 39 39 H 1.09000 * 109.48592 * 60.20513 * 9 8 7 40 40 H 1.09001 * 109.48711 * 180.25608 * 9 8 7 41 41 H 1.08999 * 109.53887 * 178.13594 * 10 9 8 42 42 H 1.09013 * 109.53661 * 298.38364 * 10 9 8 43 43 H 1.09005 * 109.49198 * 183.57760 * 11 10 9 44 44 H 1.09002 * 109.49338 * 63.51381 * 11 10 9 45 45 H 1.08997 * 110.51080 * 24.62679 * 13 12 7 46 46 H 1.08997 * 110.51379 * 147.20864 * 13 12 7 47 47 H 1.09002 * 109.47129 * 149.69928 * 17 16 14 48 48 H 1.08998 * 109.46845 * 29.70735 * 17 16 14 49 49 H 1.09002 * 109.47153 * 59.99757 * 18 17 16 50 50 H 1.09001 * 109.46832 * 299.99948 * 18 17 16 51 51 H 0.97002 * 119.99739 * 180.02562 * 22 21 19 52 52 H 1.09001 * 110.27095 * 135.64190 * 27 16 14 53 53 H 1.09003 * 110.27733 * 257.62101 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1845 0.0006 5 8 3.9659 0.5791 -1.2201 6 6 5.3822 0.4185 -1.3216 7 7 5.7960 -0.7692 -0.5626 8 6 4.7348 -1.7862 -0.5561 9 6 5.1550 -2.9563 0.3363 10 6 6.4517 -3.5667 -0.2030 11 6 7.5360 -2.4844 -0.2424 12 6 7.0481 -1.3114 -1.0812 13 6 8.1265 -0.2149 -1.1558 14 6 8.0311 0.3006 -2.5766 15 8 8.5166 1.3390 -2.9728 16 7 7.3278 -0.5595 -3.3344 17 6 7.0370 -0.3613 -4.7565 18 6 5.7142 0.3927 -4.9064 19 6 5.4154 0.5971 -6.3692 20 1 6.1002 0.2260 -7.1173 21 6 4.2670 1.2570 -6.7527 22 7 4.0061 1.4349 -8.0293 23 14 3.0821 1.8982 -5.4588 24 1 3.4584 3.2860 -5.0873 25 1 1.7011 1.8892 -6.0045 26 1 3.1449 1.0295 -4.2561 27 6 6.8940 -1.7265 -2.5544 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8901 31 1 1.6886 1.8464 0.8900 32 1 1.6888 1.8463 -0.8900 33 1 3.8508 0.5684 0.8427 34 1 3.9786 2.1764 0.0902 35 1 5.8778 1.3002 -0.9153 36 1 5.6598 0.2956 -2.3684 37 1 3.8140 -1.3480 -0.1710 38 1 4.5692 -2.1452 -1.5719 39 1 5.3171 -2.5983 1.3530 40 1 4.3702 -3.7127 0.3377 41 1 6.7711 -4.3792 0.4495 42 1 6.2830 -3.9504 -1.2093 43 1 8.4438 -2.8950 -0.6845 44 1 7.7468 -2.1437 0.7713 45 1 7.9118 0.5810 -0.4428 46 1 9.1140 -0.6371 -0.9698 47 1 6.9610 -1.3300 -5.2503 48 1 7.8391 0.2178 -5.2141 49 1 5.7901 1.3614 -4.4126 50 1 4.9121 -0.1865 -4.4488 51 1 3.1984 1.8995 -8.2990 52 1 5.8524 -1.9612 -2.7736 53 1 7.5284 -2.5851 -2.7746 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001273995928.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:30 Heat of formation + Delta-G solvation = -135.562498 kcal Electronic energy + Delta-G solvation = -33148.910429 eV Core-core repulsion = 29020.069739 eV Total energy + Delta-G solvation = -4128.840690 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.61244 -39.93740 -39.10215 -38.06488 -37.04027 -35.53344 -34.14909 -33.67167 -31.77809 -31.18923 -29.23873 -28.08922 -27.29182 -26.85582 -25.78046 -23.84518 -23.41751 -23.08093 -22.48711 -20.67988 -19.60966 -19.12007 -18.28303 -18.17009 -17.56332 -17.34644 -17.01809 -16.55625 -16.50866 -16.25677 -16.07525 -15.59926 -15.33708 -15.10219 -15.01687 -14.98242 -14.81827 -14.73778 -14.40661 -14.04963 -13.70257 -13.62527 -13.39156 -13.30852 -13.04279 -12.99429 -12.81072 -12.67861 -12.47712 -12.39103 -12.17329 -12.09415 -12.06686 -11.85046 -11.63261 -11.48528 -11.40487 -11.22823 -11.02028 -10.87819 -10.69256 -10.66077 -9.84049 -9.22244 -8.40557 -6.44569 1.23862 1.25303 1.42285 1.50855 2.02097 2.25350 2.56365 2.73735 2.81735 2.94526 3.28190 3.36386 3.74304 3.81955 3.95929 4.08172 4.15949 4.17220 4.21814 4.27785 4.30540 4.35052 4.40541 4.41149 4.43022 4.48972 4.52890 4.53955 4.57379 4.64815 4.69466 4.70523 4.72175 4.81988 4.84181 4.91922 5.00077 5.08889 5.12898 5.16808 5.21242 5.30710 5.39298 5.39491 5.54537 5.61298 5.73355 5.94854 6.13196 6.17086 6.17870 6.36189 6.61436 7.09692 7.20881 8.75454 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007500 B = 0.005995 C = 0.003886 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3732.512299 B = 4669.642527 C = 7204.254478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.057 3.943 5 O -0.397 6.397 6 C 0.204 3.796 7 N -0.528 5.528 8 C 0.056 3.944 9 C -0.107 4.107 10 C -0.122 4.122 11 C -0.088 4.088 12 C 0.114 3.886 13 C -0.135 4.135 14 C 0.497 3.503 15 O -0.583 6.583 16 N -0.617 5.617 17 C 0.144 3.856 18 C -0.005 4.005 19 C -0.530 4.530 20 H 0.044 0.956 21 C 0.019 3.981 22 N -0.940 5.940 23 Si 0.937 3.063 24 H -0.275 1.275 25 H -0.277 1.277 26 H -0.251 1.251 27 C 0.066 3.934 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.035 0.965 31 H 0.095 0.905 32 H 0.041 0.959 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.017 0.983 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.057 0.943 43 H 0.096 0.904 44 H 0.093 0.907 45 H 0.113 0.887 46 H 0.144 0.856 47 H 0.086 0.914 48 H 0.058 0.942 49 H -0.004 1.004 50 H 0.017 0.983 51 H 0.268 0.732 52 H 0.067 0.933 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.294 -10.335 26.638 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.327 6.327 3 C -0.016 4.016 4 C -0.019 4.019 5 O -0.313 6.313 6 C 0.038 3.962 7 N -0.259 5.259 8 C -0.071 4.071 9 C -0.145 4.145 10 C -0.159 4.159 11 C -0.126 4.126 12 C 0.023 3.977 13 C -0.175 4.175 14 C 0.286 3.714 15 O -0.463 6.463 16 N -0.349 5.349 17 C 0.022 3.978 18 C -0.043 4.043 19 C -0.569 4.569 20 H 0.063 0.937 21 C -0.179 4.179 22 N -0.581 5.581 23 Si 0.761 3.239 24 H -0.201 1.201 25 H -0.202 1.202 26 H -0.175 1.175 27 C -0.057 4.057 28 H 0.114 0.886 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.113 0.887 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.092 0.908 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.036 0.964 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.114 0.886 44 H 0.111 0.889 45 H 0.131 0.869 46 H 0.162 0.838 47 H 0.104 0.896 48 H 0.076 0.924 49 H 0.014 0.986 50 H 0.035 0.965 51 H 0.078 0.922 52 H 0.086 0.914 53 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.404 -9.781 26.553 28.300 hybrid contribution -1.079 1.056 -1.435 2.083 sum -0.675 -8.725 25.117 26.598 Atomic orbital electron populations 1.22904 0.79755 1.03762 1.00587 1.87894 1.21201 1.28056 1.95542 1.22687 0.92074 0.85320 1.01530 1.22789 0.93632 0.98121 0.87367 1.88087 1.21937 1.81797 1.39483 1.23611 0.80904 0.93720 0.97920 1.62377 1.04094 1.06891 1.52538 1.22042 0.94347 0.92290 0.98410 1.21553 0.98049 0.95584 0.99319 1.21663 0.94472 0.98035 1.01753 1.21472 0.98767 0.91825 1.00552 1.21502 0.89527 0.95590 0.91119 1.22522 1.02510 1.00370 0.92099 1.21820 0.76702 0.82705 0.90150 1.90694 1.50934 1.25507 1.79200 1.48747 1.53175 1.22589 1.10416 1.21198 0.96853 1.00656 0.79049 1.19655 0.94621 0.94934 0.95122 1.21246 1.06896 1.36917 0.91826 0.93744 1.25771 0.99491 0.95592 0.97076 1.70021 1.27517 1.43641 1.16877 0.85845 0.78334 0.79405 0.80303 1.20095 1.20222 1.17522 1.23124 1.01368 0.88798 0.92459 0.88623 0.92096 0.94628 0.88671 0.94055 0.90643 0.90758 0.91627 0.91638 0.90390 0.96426 0.90546 0.90934 0.89190 0.92398 0.88606 0.88872 0.86872 0.83807 0.89585 0.92394 0.98555 0.96500 0.92249 0.91447 0.87715 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 113.37 1.25 1.72 16 2 O -0.41 -10.33 10.67 -144.34 -1.54 -11.87 16 3 C 0.06 1.37 6.32 71.98 0.45 1.82 16 4 C 0.06 1.40 5.53 71.98 0.40 1.79 16 5 O -0.40 -13.33 8.84 -144.34 -1.28 -14.61 16 6 C 0.20 6.41 4.93 127.69 0.63 7.04 16 7 N -0.53 -12.43 4.67 -965.02 -4.50 -16.93 16 8 C 0.06 1.31 4.74 86.30 0.41 1.72 16 9 C -0.11 -1.67 6.07 30.65 0.19 -1.48 16 10 C -0.12 -1.47 5.81 30.72 0.18 -1.29 16 11 C -0.09 -1.06 4.66 30.43 0.14 -0.92 16 12 C 0.11 2.28 0.71 4.06 0.00 2.29 16 13 C -0.14 -2.97 5.54 30.41 0.17 -2.80 16 14 C 0.50 17.20 6.59 87.94 0.58 17.78 16 15 O -0.58 -26.02 17.59 -3.03 -0.05 -26.07 16 16 N -0.62 -21.20 1.85 -818.56 -1.52 -22.72 16 17 C 0.14 6.13 5.88 86.38 0.51 6.64 16 18 C 0.00 -0.26 3.23 29.85 0.10 -0.16 16 19 C -0.53 -32.05 9.66 25.60 0.25 -31.80 16 20 H 0.04 2.87 7.99 -2.91 -0.02 2.85 16 21 C 0.02 1.17 5.47 84.66 0.46 1.63 16 22 N -0.94 -60.64 13.96 21.45 0.30 -60.34 16 23 Si 0.94 48.21 27.47 68.60 1.88 50.09 16 24 H -0.28 -13.97 7.11 99.48 0.71 -13.26 16 25 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 26 H -0.25 -12.73 6.54 99.48 0.65 -12.08 16 27 C 0.07 1.67 4.78 86.58 0.41 2.08 16 28 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.68 8.14 -2.38 -0.02 0.66 16 31 H 0.10 1.48 8.14 -2.38 -0.02 1.46 16 32 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.67 7.66 -2.39 -0.02 1.65 16 34 H 0.07 1.61 8.09 -2.39 -0.02 1.59 16 35 H 0.07 2.00 7.40 -2.39 -0.02 1.99 16 36 H 0.07 2.52 3.23 -2.39 -0.01 2.51 16 37 H 0.08 2.10 6.00 -2.39 -0.01 2.08 16 38 H 0.02 0.49 6.19 -2.39 -0.01 0.48 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.06 0.79 7.58 -2.38 -0.02 0.77 16 43 H 0.10 0.81 8.05 -2.38 -0.02 0.79 16 44 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.11 2.43 7.48 -2.39 -0.02 2.41 16 46 H 0.14 2.20 7.86 -2.39 -0.02 2.18 16 47 H 0.09 3.37 8.14 -2.39 -0.02 3.35 16 48 H 0.06 2.67 7.92 -2.39 -0.02 2.66 16 49 H 0.00 -0.21 7.49 -2.39 -0.02 -0.23 16 50 H 0.02 0.86 7.01 -2.39 -0.02 0.84 16 51 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 52 H 0.07 1.96 5.97 -2.39 -0.01 1.95 16 53 H 0.10 2.05 7.79 -2.39 -0.02 2.03 16 Total: -1.00 -80.47 400.15 0.24 -80.22 By element: Atomic # 1 Polarization: 15.35 SS G_CDS: 0.82 Total: 16.17 kcal Atomic # 6 Polarization: -0.06 SS G_CDS: 6.13 Total: 6.07 kcal Atomic # 7 Polarization: -94.28 SS G_CDS: -5.72 Total: -100.00 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -2.87 Total: -52.55 kcal Atomic # 14 Polarization: 48.21 SS G_CDS: 1.88 Total: 50.09 kcal Total: -80.47 0.24 -80.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001273995928.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.338 kcal (2) G-P(sol) polarization free energy of solvation -80.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds