Wall clock time and date at job start Sat Apr 11 2020 06:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42898 * 114.00509 * 2 1 4 4 C 1.53005 * 109.47463 * 202.35794 * 3 2 1 5 5 N 1.46498 * 109.46838 * 300.00113 * 4 3 2 6 6 C 1.45778 * 117.95736 * 270.01947 * 5 4 3 7 7 C 1.52773 * 110.50246 * 161.06388 * 6 5 4 8 8 C 1.53219 * 108.91210 * 50.51147 * 7 6 5 9 9 C 1.53083 * 108.45509 * 292.69782 * 8 7 6 10 10 C 1.33348 * 117.95616 * 90.00291 * 5 4 3 11 11 O 1.21279 * 118.22760 * 2.33728 * 10 5 4 12 12 C 1.52997 * 109.75028 * 290.65176 * 7 6 5 13 13 C 1.53062 * 109.27808 * 182.03213 * 12 7 6 14 14 N 1.46844 * 109.50853 * 59.01373 * 13 12 7 15 15 C 1.46903 * 110.99626 * 174.09237 * 14 13 12 16 16 C 1.50700 * 109.47029 * 64.57867 * 15 14 13 17 17 H 1.08001 * 119.99843 * 357.40384 * 16 15 14 18 18 C 1.37877 * 119.99782 * 177.39313 * 16 15 14 19 19 N 1.31513 * 120.00127 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99626 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47125 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47044 * 120.00279 * 20 18 16 23 23 H 1.48492 * 109.47111 * 240.00351 * 20 18 16 24 24 C 1.46834 * 111.24492 * 298.22536 * 14 13 12 25 25 C 1.52982 * 109.77715 * 170.39289 * 7 6 5 26 26 O 1.42903 * 109.46925 * 82.35535 * 3 2 1 27 27 C 1.42899 * 114.00250 * 285.54477 * 26 3 2 28 28 H 1.09003 * 109.46925 * 304.44400 * 1 2 3 29 29 H 1.09001 * 109.47220 * 64.43690 * 1 2 3 30 30 H 1.08994 * 109.47336 * 184.44389 * 1 2 3 31 31 H 1.09005 * 109.47280 * 322.36204 * 3 2 1 32 32 H 1.08996 * 109.47001 * 180.02562 * 4 3 2 33 33 H 1.08991 * 109.46749 * 60.00113 * 4 3 2 34 34 H 1.08998 * 109.26943 * 40.79612 * 6 5 4 35 35 H 1.09003 * 109.27228 * 281.32553 * 6 5 4 36 36 H 1.09004 * 109.63623 * 52.38277 * 8 7 6 37 37 H 1.09000 * 109.64172 * 173.00564 * 8 7 6 38 38 H 1.09002 * 109.40326 * 168.90666 * 9 8 7 39 39 H 1.09005 * 109.40161 * 288.73250 * 9 8 7 40 40 H 1.09005 * 109.50318 * 62.09056 * 12 7 6 41 41 H 1.09000 * 109.53837 * 301.99608 * 12 7 6 42 42 H 1.08998 * 109.46399 * 299.00001 * 13 12 7 43 43 H 1.09001 * 109.46418 * 179.02723 * 13 12 7 44 44 H 1.09002 * 109.47222 * 304.57718 * 15 14 13 45 45 H 1.09004 * 109.46708 * 184.57831 * 15 14 13 46 46 H 0.97003 * 119.99738 * 179.97438 * 19 18 16 47 47 H 1.09001 * 109.46831 * 181.78772 * 24 14 13 48 48 H 1.09005 * 109.46644 * 301.76684 * 24 14 13 49 49 H 1.09001 * 109.50335 * 297.88539 * 25 7 6 50 50 H 1.08991 * 109.50922 * 57.97014 * 25 7 6 51 51 H 1.08997 * 109.46822 * 318.17452 * 27 26 3 52 52 H 1.08996 * 109.47072 * 78.17486 * 27 26 3 53 53 H 1.09003 * 109.46776 * 198.17624 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.4365 1.2286 -0.5487 5 7 4.2369 0.3376 0.2948 6 6 4.9473 0.9225 1.4255 7 6 5.3257 -0.1583 2.4367 8 6 6.0270 -1.3041 1.6999 9 6 5.0073 -1.9888 0.7862 10 6 4.2699 -0.9579 -0.0193 11 8 3.6724 -1.3235 -1.0093 12 6 4.0652 -0.6883 3.1230 13 6 4.4608 -1.7334 4.1690 14 7 5.3614 -1.1233 5.1555 15 6 5.6506 -2.0569 6.2523 16 6 6.4081 -3.2438 5.7151 17 1 6.6138 -3.3194 4.6576 18 6 6.8386 -4.2329 6.5737 19 7 6.5878 -4.1408 7.8615 20 14 7.7769 -5.7045 5.9077 21 1 7.9273 -5.5710 4.4364 22 1 9.1199 -5.7621 6.5388 23 1 7.0301 -6.9497 6.2185 24 6 6.6008 -0.6522 4.5247 25 6 6.2698 0.4255 3.4894 26 8 2.0403 1.8134 1.3353 27 6 0.7655 2.2321 1.8268 28 1 -0.3633 0.5813 0.8475 29 1 -0.3634 0.4434 -0.9271 30 1 -0.3634 -1.0245 0.0796 31 1 1.4147 1.9684 -0.6276 32 1 3.8800 2.2243 -0.5483 33 1 3.4135 0.8412 -1.5672 34 1 4.3074 1.6601 1.9098 35 1 5.8526 1.4125 1.0670 36 1 6.8468 -0.9071 1.1011 37 1 6.4121 -2.0232 2.4228 38 1 5.5254 -2.6717 0.1130 39 1 4.2960 -2.5489 1.3932 40 1 3.4116 -1.1460 2.3804 41 1 3.5421 0.1345 3.6104 42 1 4.9684 -2.5640 3.6787 43 1 3.5662 -2.1006 4.6720 44 1 4.7151 -2.3945 6.6984 45 1 6.2529 -1.5534 7.0086 46 1 6.8905 -4.8370 8.4654 47 1 7.2598 -0.2345 5.2859 48 1 7.0984 -1.4880 4.0326 49 1 7.1881 0.7619 3.0081 50 1 5.7875 1.2691 3.9830 51 1 0.2333 2.7713 1.0431 52 1 0.1860 1.3583 2.1245 53 1 0.9049 2.8862 2.6875 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274030434.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:38 Heat of formation + Delta-G solvation = -138.714854 kcal Electronic energy + Delta-G solvation = -33163.811108 eV Core-core repulsion = 29034.833722 eV Total energy + Delta-G solvation = -4128.977386 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.09318 -40.25804 -39.59053 -37.24825 -36.84358 -35.60280 -34.41502 -32.53048 -31.49027 -30.79299 -29.25766 -27.76906 -27.10838 -26.83506 -25.29332 -24.68545 -23.83533 -23.57083 -22.29454 -20.31038 -18.96825 -18.37784 -18.26942 -18.13889 -17.43173 -17.13535 -16.99638 -16.86311 -16.18016 -15.80889 -15.73028 -15.39315 -15.30132 -15.08665 -14.95255 -14.69509 -14.45511 -14.36617 -14.05536 -13.66090 -13.45576 -13.35942 -13.25224 -13.18122 -13.00067 -12.88575 -12.82415 -12.65266 -12.58290 -12.19875 -12.17574 -12.09841 -11.92992 -11.87069 -11.72656 -11.29750 -11.01467 -11.00570 -10.92480 -10.66997 -10.59233 -10.47099 -9.54861 -8.89489 -8.11878 -6.32486 1.35748 1.37828 1.48662 1.76470 2.08821 2.37908 2.74373 2.90941 3.11651 3.42880 3.63975 3.75197 3.78029 3.80970 3.86254 4.02393 4.23392 4.25762 4.32709 4.38450 4.40456 4.41958 4.48924 4.52458 4.56057 4.62346 4.69027 4.73306 4.74357 4.79615 4.83714 4.87929 4.91913 4.96369 4.99208 5.09298 5.14237 5.16925 5.26567 5.34609 5.35933 5.39338 5.46628 5.56234 5.59465 5.77854 6.10082 6.12627 6.20085 6.33185 6.58973 6.66649 6.90421 7.31347 7.39258 8.89172 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016112 B = 0.003336 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.413147 B = 8390.787926 C = 8720.566822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.405 6.405 3 C 0.221 3.779 4 C 0.121 3.879 5 N -0.584 5.584 6 C 0.133 3.867 7 C -0.062 4.062 8 C -0.113 4.113 9 C -0.132 4.132 10 C 0.526 3.474 11 O -0.587 6.587 12 C -0.080 4.080 13 C 0.069 3.931 14 N -0.538 5.538 15 C 0.200 3.800 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.011 3.989 19 N -0.928 5.928 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.277 1.277 23 H -0.282 1.282 24 C 0.063 3.937 25 C -0.088 4.088 26 O -0.399 6.399 27 C 0.020 3.980 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.129 0.871 33 H 0.096 0.904 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.062 0.938 38 H 0.097 0.903 39 H 0.084 0.916 40 H 0.053 0.947 41 H 0.065 0.935 42 H 0.022 0.978 43 H 0.040 0.960 44 H -0.004 1.004 45 H 0.006 0.994 46 H 0.264 0.736 47 H 0.054 0.946 48 H 0.026 0.974 49 H 0.091 0.909 50 H 0.077 0.923 51 H 0.061 0.939 52 H 0.040 0.960 53 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.898 16.993 -17.894 25.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.326 6.326 3 C 0.125 3.875 4 C -0.002 4.002 5 N -0.315 5.315 6 C 0.011 3.989 7 C -0.063 4.063 8 C -0.150 4.150 9 C -0.171 4.171 10 C 0.315 3.685 11 O -0.468 6.468 12 C -0.118 4.118 13 C -0.060 4.060 14 N -0.261 5.261 15 C 0.073 3.927 16 C -0.588 4.588 17 H 0.077 0.923 18 C -0.188 4.188 19 N -0.568 5.568 20 Si 0.778 3.222 21 H -0.189 1.189 22 H -0.203 1.203 23 H -0.208 1.208 24 C -0.065 4.065 25 C -0.126 4.126 26 O -0.319 6.319 27 C -0.076 4.076 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.147 0.853 33 H 0.114 0.886 34 H 0.111 0.889 35 H 0.107 0.893 36 H 0.105 0.895 37 H 0.081 0.919 38 H 0.116 0.884 39 H 0.103 0.897 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.040 0.960 43 H 0.059 0.941 44 H 0.015 0.985 45 H 0.024 0.976 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.045 0.955 49 H 0.109 0.891 50 H 0.095 0.905 51 H 0.079 0.921 52 H 0.058 0.942 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.128 16.985 -17.921 25.995 hybrid contribution 0.082 -2.028 0.164 2.037 sum -8.046 14.957 -17.758 24.572 Atomic orbital electron populations 1.23196 0.80545 1.03443 1.01214 1.88192 1.20630 1.29942 1.93813 1.24110 0.96111 0.82974 0.84268 1.21760 0.86958 0.96281 0.95168 1.47026 1.48139 1.06873 1.29445 1.21564 0.97185 0.95064 0.85094 1.20692 0.95529 0.95247 0.94790 1.21775 0.97586 0.97774 0.97878 1.21618 0.99260 0.97336 0.98926 1.20084 0.80145 0.83635 0.84636 1.90647 1.46910 1.79815 1.29399 1.21424 0.96488 0.98040 0.95862 1.21834 0.95434 0.95678 0.93051 1.62354 1.14875 1.38274 1.10640 1.19390 0.94052 0.89356 0.89932 1.22019 1.35867 1.06835 0.94125 0.92290 1.25793 0.96965 1.01033 0.94986 1.70076 1.47652 1.35311 1.03745 0.85584 0.78449 0.79290 0.78858 1.18924 1.20309 1.20763 1.21936 0.91326 0.96898 0.96357 1.21493 0.99345 0.97390 0.94405 1.88033 1.31097 1.80910 1.31886 1.23109 0.85136 0.99050 1.00316 0.92187 0.92579 0.90316 0.89938 0.85299 0.88618 0.88884 0.89331 0.89479 0.91949 0.88439 0.89737 0.92882 0.91632 0.96002 0.94113 0.98539 0.97588 0.92737 0.92709 0.95550 0.89070 0.90458 0.92087 0.94178 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.21 10.67 113.37 1.21 1.42 16 2 O -0.41 -10.27 9.05 -121.31 -1.10 -11.36 16 3 C 0.22 4.14 3.16 71.98 0.23 4.37 16 4 C 0.12 2.20 5.52 86.38 0.48 2.68 16 5 N -0.58 -13.18 2.61 -826.89 -2.16 -15.35 16 6 C 0.13 2.57 4.83 86.44 0.42 2.98 16 7 C -0.06 -1.54 0.52 -52.19 -0.03 -1.56 16 8 C -0.11 -2.93 4.32 30.70 0.13 -2.80 16 9 C -0.13 -3.70 5.39 29.71 0.16 -3.54 16 10 C 0.53 15.22 6.15 87.71 0.54 15.76 16 11 O -0.59 -20.79 15.31 8.51 0.13 -20.66 16 12 C -0.08 -2.46 4.32 30.61 0.13 -2.33 16 13 C 0.07 2.68 4.87 86.33 0.42 3.11 16 14 N -0.54 -22.76 4.85 -900.83 -4.37 -27.14 16 15 C 0.20 10.58 5.12 85.56 0.44 11.02 16 16 C -0.55 -30.31 7.73 25.60 0.20 -30.11 16 17 H 0.06 3.18 5.85 -2.91 -0.02 3.17 16 18 C 0.01 0.64 5.46 84.65 0.46 1.10 16 19 N -0.93 -55.64 13.29 21.45 0.28 -55.36 16 20 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 21 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 22 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 23 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 24 C 0.06 2.28 4.79 86.34 0.41 2.69 16 25 C -0.09 -2.22 4.88 30.61 0.15 -2.07 16 26 O -0.40 -7.66 8.91 -126.21 -1.12 -8.79 16 27 C 0.02 0.28 9.78 113.37 1.11 1.39 16 28 H 0.06 0.91 4.57 -2.39 -0.01 0.90 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 1.09 7.58 -2.38 -0.02 1.07 16 32 H 0.13 1.40 8.01 -2.39 -0.02 1.38 16 33 H 0.10 1.96 7.13 -2.39 -0.02 1.94 16 34 H 0.09 1.77 6.65 -2.39 -0.02 1.76 16 35 H 0.09 1.28 8.11 -2.39 -0.02 1.26 16 36 H 0.09 1.88 8.13 -2.39 -0.02 1.87 16 37 H 0.06 1.97 5.01 -2.39 -0.01 1.96 16 38 H 0.10 2.60 8.14 -2.39 -0.02 2.58 16 39 H 0.08 2.65 6.83 -2.38 -0.02 2.63 16 40 H 0.05 1.71 5.72 -2.38 -0.01 1.70 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.02 0.93 5.37 -2.39 -0.01 0.91 16 43 H 0.04 1.72 8.08 -2.39 -0.02 1.70 16 44 H 0.00 -0.21 8.09 -2.39 -0.02 -0.23 16 45 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 47 H 0.05 2.06 8.12 -2.39 -0.02 2.04 16 48 H 0.03 1.04 4.94 -2.38 -0.01 1.03 16 49 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 51 H 0.06 0.59 7.76 -2.39 -0.02 0.57 16 52 H 0.04 0.64 6.08 -2.39 -0.01 0.62 16 53 H 0.09 1.15 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -72.22 387.86 1.05 -71.17 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 0.90 Total: 17.22 kcal Atomic # 6 Polarization: -2.35 SS G_CDS: 6.46 Total: 4.11 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -6.25 Total: -97.84 kcal Atomic # 8 Polarization: -38.72 SS G_CDS: -2.09 Total: -40.81 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -72.22 1.05 -71.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274030434.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.542 kcal (2) G-P(sol) polarization free energy of solvation -72.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds