Wall clock time and date at job start Sat Apr 11 2020 06:10:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42892 * 114.00564 * 2 1 4 4 C 1.52994 * 109.47479 * 205.76297 * 3 2 1 5 5 N 1.46497 * 109.47578 * 300.00145 * 4 3 2 6 6 C 1.46889 * 124.37354 * 90.01802 * 5 4 3 7 7 C 1.54711 * 105.51726 * 196.55101 * 6 5 4 8 8 C 1.53581 * 101.51247 * 335.50647 * 7 6 5 9 9 C 1.53319 * 111.07375 * 262.65021 * 8 7 6 10 10 C 1.54500 * 104.75686 * 216.60023 * 9 8 7 11 11 C 1.54452 * 105.04474 * 359.25884 * 10 9 8 12 12 N 1.47392 * 111.07544 * 144.99930 * 8 7 6 13 13 C 1.46899 * 111.00031 * 278.33283 * 12 8 7 14 14 C 1.53001 * 109.46915 * 169.99929 * 13 12 8 15 15 C 1.53003 * 109.46906 * 179.97438 * 14 13 12 16 16 C 1.50700 * 109.47105 * 180.02562 * 15 14 13 17 17 H 1.08004 * 120.00051 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00299 * 180.02562 * 16 15 14 19 19 N 1.31513 * 120.00497 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 119.99709 * 359.97438 * 18 16 15 21 21 H 1.48507 * 109.47271 * 90.00143 * 20 18 16 22 22 H 1.48501 * 109.47187 * 209.99820 * 20 18 16 23 23 H 1.48496 * 109.47322 * 330.00095 * 20 18 16 24 24 C 1.34760 * 124.37333 * 269.72185 * 5 4 3 25 25 O 1.21282 * 125.13219 * 359.20075 * 24 5 4 26 26 O 1.42900 * 109.47178 * 85.76430 * 3 2 1 27 27 C 1.42900 * 114.00122 * 286.10597 * 26 3 2 28 28 H 1.09005 * 109.46952 * 66.53039 * 1 2 3 29 29 H 1.09001 * 109.47843 * 186.53632 * 1 2 3 30 30 H 1.09004 * 109.47219 * 306.53979 * 1 2 3 31 31 H 1.09003 * 109.47081 * 325.77092 * 3 2 1 32 32 H 1.08998 * 109.47374 * 179.97438 * 4 3 2 33 33 H 1.09008 * 109.47044 * 60.00434 * 4 3 2 34 34 H 1.08998 * 110.23632 * 315.56373 * 6 5 4 35 35 H 1.08998 * 110.23360 * 77.45184 * 6 5 4 36 36 H 1.08996 * 111.01992 * 93.56653 * 7 6 5 37 37 H 1.09003 * 111.01568 * 217.44710 * 7 6 5 38 38 H 1.09002 * 110.38388 * 335.42304 * 9 8 7 39 39 H 1.09004 * 110.37957 * 97.67058 * 9 8 7 40 40 H 1.08996 * 110.32577 * 118.15562 * 10 9 8 41 41 H 1.09007 * 110.32568 * 240.26176 * 10 9 8 42 42 H 1.09003 * 110.38042 * 142.37448 * 11 10 9 43 43 H 1.09001 * 110.37801 * 264.62065 * 11 10 9 44 44 H 1.08996 * 109.47514 * 290.00136 * 13 12 8 45 45 H 1.09000 * 109.47101 * 50.00207 * 13 12 8 46 46 H 1.08996 * 109.47562 * 299.99996 * 14 13 12 47 47 H 1.08998 * 109.47417 * 60.00543 * 14 13 12 48 48 H 1.08996 * 109.47530 * 300.00211 * 15 14 13 49 49 H 1.09000 * 109.47094 * 60.00287 * 15 14 13 50 50 H 0.96997 * 120.00333 * 180.02562 * 19 18 16 51 51 H 1.09000 * 109.47586 * 196.32563 * 27 26 3 52 52 H 1.09000 * 109.47375 * 316.32108 * 27 26 3 53 53 H 1.08999 * 109.47586 * 76.32487 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0103 1.3053 0.0000 4 6 3.4045 1.2428 -0.6269 5 7 4.2490 0.3322 0.1500 6 6 4.3720 -1.1085 -0.1085 7 6 4.9989 -1.7069 1.1731 8 6 5.7284 -0.4875 1.7557 9 6 7.2131 -0.4987 1.3734 10 6 7.9436 0.0587 2.6155 11 6 6.8236 0.3743 3.6311 12 7 5.6895 -0.5005 3.2290 13 6 4.4132 0.0301 3.7266 14 6 4.3061 -0.2268 5.2311 15 6 2.9771 0.3264 5.7495 16 6 2.8718 0.0739 7.2315 17 1 3.6724 -0.4310 7.7515 18 6 1.7528 0.4866 7.9233 19 7 1.6606 0.2659 9.2165 20 14 0.3676 1.3593 7.0237 21 1 -0.6115 0.3572 6.5312 22 1 -0.3106 2.2992 7.9520 23 1 0.9237 2.1151 5.8728 24 6 5.0178 0.7091 1.1906 25 8 5.1208 1.8434 1.6075 26 8 2.1132 1.7810 1.3436 27 6 0.8654 2.1750 1.9179 28 1 -0.3633 0.4093 -0.9427 29 1 -0.3635 -1.0209 0.1170 30 1 -0.3634 0.6119 0.8257 31 1 1.3819 1.9829 -0.5781 32 1 3.8477 2.2386 -0.6273 33 1 3.3260 0.8801 -1.6519 34 1 3.3891 -1.5448 -0.2866 35 1 5.0225 -1.2836 -0.9653 36 1 4.2278 -2.0640 1.8556 37 1 5.7020 -2.5034 0.9291 38 1 7.5434 -1.5160 1.1635 39 1 7.3874 0.1421 0.5090 40 1 8.6238 -0.6895 3.0221 41 1 8.4901 0.9660 2.3579 42 1 7.1494 0.1324 4.6428 43 1 6.5371 1.4240 3.5662 44 1 4.3668 1.1024 3.5369 45 1 3.5890 -0.4656 3.2138 46 1 4.3524 -1.2991 5.4209 47 1 5.1302 0.2689 5.7440 48 1 2.9311 1.3987 5.5598 49 1 2.1526 -0.1689 5.2367 50 1 0.8733 0.5558 9.7031 51 1 1.0489 2.7822 2.8043 52 1 0.2980 2.7560 1.1907 53 1 0.2973 1.2875 2.1967 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039818.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:58 Heat of formation + Delta-G solvation = -136.515568 kcal Electronic energy + Delta-G solvation = -33165.839238 eV Core-core repulsion = 29036.957220 eV Total energy + Delta-G solvation = -4128.882018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.36448 -40.26315 -38.61401 -37.39601 -36.99225 -36.22122 -34.40691 -33.41204 -32.10930 -30.18320 -28.74864 -28.29207 -27.72726 -27.01602 -25.13764 -24.26480 -23.72880 -22.51712 -21.90971 -21.24769 -19.97191 -18.93855 -18.49488 -18.38391 -17.47465 -17.24959 -17.01729 -16.42807 -16.24876 -16.10716 -16.02604 -15.63145 -15.40388 -14.95798 -14.85371 -14.78571 -14.67212 -14.59174 -14.18642 -13.77539 -13.67889 -13.53805 -13.43480 -13.33957 -13.10897 -12.93141 -12.78241 -12.67653 -12.47620 -12.29207 -12.22909 -12.11738 -11.88242 -11.82940 -11.60928 -11.46308 -11.41785 -11.31793 -11.06103 -10.95791 -10.85261 -10.81115 -9.65329 -9.32830 -8.33953 -6.37580 1.26078 1.29784 1.42845 1.57207 2.01390 2.31057 2.63532 2.78596 2.88034 3.00174 3.44423 3.54752 3.64584 3.73119 3.89741 3.93347 4.08305 4.14987 4.18269 4.21632 4.23229 4.30524 4.34388 4.38905 4.41110 4.41593 4.54131 4.62503 4.64629 4.67684 4.72980 4.80899 4.83282 4.85167 4.86949 4.93734 4.99716 5.02827 5.10058 5.16167 5.23473 5.27866 5.41810 5.51128 5.59600 5.61151 5.89378 5.93755 5.99856 6.08919 6.18904 6.25281 6.68567 7.25212 7.26547 8.83040 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009157 B = 0.004954 C = 0.003565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3057.182708 B = 5650.997833 C = 7851.400248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.011 3.989 2 O -0.402 6.402 3 C 0.214 3.786 4 C 0.141 3.859 5 N -0.609 5.609 6 C 0.108 3.892 7 C -0.110 4.110 8 C 0.047 3.953 9 C -0.092 4.092 10 C -0.115 4.115 11 C 0.023 3.977 12 N -0.480 5.480 13 C 0.063 3.937 14 C -0.080 4.080 15 C 0.000 4.000 16 C -0.530 4.530 17 H 0.034 0.966 18 C 0.008 3.992 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.261 1.261 22 H -0.277 1.277 23 H -0.257 1.257 24 C 0.504 3.496 25 O -0.560 6.560 26 O -0.407 6.407 27 C 0.024 3.976 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.138 0.862 34 H 0.089 0.911 35 H 0.105 0.895 36 H 0.066 0.934 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.028 0.972 44 H 0.026 0.974 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.041 0.959 48 H 0.004 0.996 49 H 0.012 0.988 50 H 0.268 0.732 51 H 0.066 0.934 52 H 0.071 0.929 53 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.866 -2.219 -30.914 31.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.322 6.322 3 C 0.118 3.882 4 C 0.018 3.982 5 N -0.342 5.342 6 C -0.014 4.014 7 C -0.148 4.148 8 C -0.047 4.047 9 C -0.130 4.130 10 C -0.153 4.153 11 C -0.105 4.105 12 N -0.203 5.203 13 C -0.065 4.065 14 C -0.119 4.119 15 C -0.038 4.038 16 C -0.568 4.568 17 H 0.052 0.948 18 C -0.189 4.189 19 N -0.588 5.588 20 Si 0.770 3.230 21 H -0.185 1.185 22 H -0.203 1.203 23 H -0.181 1.181 24 C 0.291 3.709 25 O -0.438 6.438 26 O -0.327 6.327 27 C -0.072 4.072 28 H 0.085 0.915 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.156 0.844 34 H 0.107 0.893 35 H 0.123 0.877 36 H 0.085 0.915 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.111 0.889 41 H 0.091 0.909 42 H 0.094 0.906 43 H 0.047 0.953 44 H 0.044 0.956 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.022 0.978 49 H 0.031 0.969 50 H 0.077 0.923 51 H 0.084 0.916 52 H 0.090 0.910 53 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 4.087 -2.257 -30.283 30.641 hybrid contribution -1.703 1.757 0.526 2.503 sum 2.384 -0.501 -29.757 29.857 Atomic orbital electron populations 1.23223 0.79996 1.04076 1.01155 1.87990 1.21039 1.29296 1.93887 1.24260 0.96536 0.83669 0.83723 1.21638 0.85545 0.95299 0.95711 1.48247 1.43562 1.10466 1.31911 1.22392 1.02892 0.77975 0.98159 1.22594 1.00326 0.96113 0.95733 1.22385 0.98520 0.94405 0.89361 1.22163 0.88966 1.04064 0.97784 1.22330 0.96711 1.01844 0.94401 1.23250 0.91979 0.94804 1.00424 1.65456 1.02887 1.46557 1.05366 1.22112 0.91417 0.97233 0.95723 1.21182 0.97132 1.00296 0.93244 1.19370 0.94864 0.95291 0.94258 1.21427 1.04086 1.37717 0.93600 0.94812 1.25956 1.01120 0.96289 0.95526 1.70055 1.30561 1.49081 1.09145 0.85711 0.79027 0.79275 0.79020 1.18530 1.20277 1.18136 1.21523 0.79577 0.89878 0.79920 1.90666 1.66218 1.24027 1.62886 1.88204 1.31079 1.82534 1.30898 1.22988 0.86115 0.99196 0.98931 0.91525 0.88730 0.94037 0.89591 0.89169 0.84411 0.89312 0.87743 0.91546 0.85621 0.86814 0.90663 0.88940 0.90884 0.90603 0.95335 0.95558 0.92354 0.92609 0.94019 0.97773 0.96920 0.92348 0.91557 0.91031 0.93727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.18 10.68 113.37 1.21 1.39 16 2 O -0.40 -8.49 9.46 -126.21 -1.19 -9.68 16 3 C 0.21 4.55 3.15 71.98 0.23 4.77 16 4 C 0.14 2.60 6.07 86.38 0.52 3.12 16 5 N -0.61 -13.76 2.76 -818.16 -2.26 -16.02 16 6 C 0.11 1.70 7.21 86.89 0.63 2.32 16 7 C -0.11 -2.12 6.29 31.37 0.20 -1.93 16 8 C 0.05 1.21 0.56 2.83 0.00 1.21 16 9 C -0.09 -1.76 6.17 31.21 0.19 -1.56 16 10 C -0.11 -2.56 7.01 31.60 0.22 -2.34 16 11 C 0.02 0.74 5.57 86.43 0.48 1.23 16 12 N -0.48 -15.86 5.02 -840.93 -4.22 -20.08 16 13 C 0.06 2.59 3.79 86.30 0.33 2.91 16 14 C -0.08 -3.76 5.27 30.60 0.16 -3.60 16 15 C 0.00 0.01 4.04 29.85 0.12 0.13 16 16 C -0.53 -33.26 9.66 25.60 0.25 -33.01 16 17 H 0.03 2.30 7.99 -2.91 -0.02 2.28 16 18 C 0.01 0.50 5.47 84.65 0.46 0.96 16 19 N -0.95 -62.03 13.96 21.45 0.30 -61.73 16 20 Si 0.95 47.22 27.47 68.60 1.88 49.11 16 21 H -0.26 -12.22 7.11 99.48 0.71 -11.52 16 22 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 23 H -0.26 -12.42 6.54 99.48 0.65 -11.77 16 24 C 0.50 15.25 5.04 87.50 0.44 15.69 16 25 O -0.56 -22.03 14.69 -3.04 -0.04 -22.08 16 26 O -0.41 -12.69 9.97 -126.21 -1.26 -13.95 16 27 C 0.02 0.64 9.76 113.37 1.11 1.74 16 28 H 0.07 0.71 8.14 -2.38 -0.02 0.69 16 29 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 30 H 0.04 0.73 4.80 -2.38 -0.01 0.72 16 31 H 0.09 1.31 7.56 -2.39 -0.02 1.29 16 32 H 0.09 1.85 7.93 -2.39 -0.02 1.83 16 33 H 0.14 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.09 1.39 7.31 -2.39 -0.02 1.37 16 35 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.07 1.63 7.39 -2.39 -0.02 1.62 16 37 H 0.13 1.56 7.45 -2.39 -0.02 1.54 16 38 H 0.11 1.48 7.45 -2.39 -0.02 1.46 16 39 H 0.07 1.34 7.85 -2.39 -0.02 1.32 16 40 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.07 1.54 8.14 -2.38 -0.02 1.52 16 42 H 0.08 2.47 7.91 -2.39 -0.02 2.45 16 43 H 0.03 1.08 6.80 -2.39 -0.02 1.06 16 44 H 0.03 1.23 5.91 -2.39 -0.01 1.21 16 45 H 0.06 2.43 7.28 -2.39 -0.02 2.41 16 46 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 47 H 0.04 1.99 7.51 -2.39 -0.02 1.97 16 48 H 0.00 0.22 7.20 -2.39 -0.02 0.20 16 49 H 0.01 0.66 7.57 -2.39 -0.02 0.64 16 50 H 0.27 16.21 8.31 -92.71 -0.77 15.44 16 51 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 52 H 0.07 1.37 7.80 -2.39 -0.02 1.35 16 53 H 0.04 1.20 6.27 -2.39 -0.01 1.19 16 Total: -1.00 -84.44 403.26 0.58 -83.86 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.82 Total: 17.53 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 6.55 Total: -6.96 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -6.18 Total: -97.83 kcal Atomic # 8 Polarization: -43.21 SS G_CDS: -2.50 Total: -45.71 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 1.88 Total: 49.11 kcal Total: -84.44 0.58 -83.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039818.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.652 kcal (2) G-P(sol) polarization free energy of solvation -84.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds