Wall clock time and date at job start Sat Apr 11 2020 06:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42898 * 113.99648 * 2 1 4 4 C 1.53000 * 109.46894 * 205.76834 * 3 2 1 5 5 N 1.46505 * 109.47290 * 300.00193 * 4 3 2 6 6 C 1.46842 * 124.36787 * 90.02384 * 5 4 3 7 7 C 1.54638 * 105.50308 * 196.85940 * 6 5 4 8 8 C 1.53897 * 101.58984 * 335.22377 * 7 6 5 9 9 C 1.53593 * 110.33522 * 143.78503 * 8 7 6 10 10 C 1.55321 * 102.79765 * 99.55051 * 9 8 7 11 11 C 1.54983 * 101.73922 * 35.03338 * 10 9 8 12 12 N 1.46650 * 110.87253 * 263.47199 * 8 7 6 13 13 C 1.46901 * 110.99675 * 115.73249 * 12 8 7 14 14 C 1.53003 * 109.47173 * 169.99724 * 13 12 8 15 15 C 1.53005 * 109.47102 * 179.97438 * 14 13 12 16 16 C 1.50698 * 109.46763 * 180.02562 * 15 14 13 17 17 H 1.08002 * 120.00473 * 359.97438 * 16 15 14 18 18 C 1.37875 * 120.00055 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00594 * 179.97438 * 18 16 15 20 20 Si 1.86810 * 119.99709 * 359.97438 * 18 16 15 21 21 H 1.48494 * 109.46982 * 90.00636 * 20 18 16 22 22 H 1.48496 * 109.46882 * 210.00253 * 20 18 16 23 23 H 1.48499 * 109.46915 * 330.00195 * 20 18 16 24 24 C 1.34662 * 124.36753 * 269.72635 * 5 4 3 25 25 O 1.21279 * 125.07480 * 359.15751 * 24 5 4 26 26 O 1.42896 * 109.47018 * 85.76951 * 3 2 1 27 27 C 1.42892 * 114.00268 * 286.09921 * 26 3 2 28 28 H 1.09002 * 109.47374 * 66.53579 * 1 2 3 29 29 H 1.08997 * 109.47213 * 186.53208 * 1 2 3 30 30 H 1.08995 * 109.47285 * 306.53564 * 1 2 3 31 31 H 1.09000 * 109.47720 * 325.76544 * 3 2 1 32 32 H 1.08998 * 109.47712 * 60.00309 * 4 3 2 33 33 H 1.09004 * 109.47279 * 180.02562 * 4 3 2 34 34 H 1.09003 * 110.24120 * 315.86587 * 6 5 4 35 35 H 1.09001 * 110.24201 * 77.76080 * 6 5 4 36 36 H 1.08999 * 111.00621 * 93.30250 * 7 6 5 37 37 H 1.09005 * 111.00137 * 217.10589 * 7 6 5 38 38 H 1.09001 * 110.74893 * 217.87384 * 9 8 7 39 39 H 1.08999 * 110.75298 * 341.22338 * 9 8 7 40 40 H 1.09000 * 110.97292 * 276.92115 * 10 9 8 41 41 H 1.09001 * 110.97425 * 153.14098 * 10 9 8 42 42 H 1.08994 * 110.36655 * 204.50382 * 11 10 9 43 43 H 1.08997 * 110.36621 * 82.17866 * 11 10 9 44 44 H 1.09004 * 109.47324 * 289.99352 * 13 12 8 45 45 H 1.08993 * 109.47354 * 49.99607 * 13 12 8 46 46 H 1.09001 * 109.47592 * 299.99984 * 14 13 12 47 47 H 1.09001 * 109.47033 * 60.00078 * 14 13 12 48 48 H 1.09004 * 109.46889 * 299.99677 * 15 14 13 49 49 H 1.08993 * 109.47335 * 59.99938 * 15 14 13 50 50 H 0.97001 * 120.00322 * 179.97438 * 19 18 16 51 51 H 1.08999 * 109.47206 * 316.32438 * 27 26 3 52 52 H 1.08998 * 109.47269 * 76.32272 * 27 26 3 53 53 H 1.09003 * 109.47773 * 196.32186 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4043 1.2430 -0.6271 5 7 4.2490 0.3324 0.1499 6 6 4.3720 -1.1078 -0.1087 7 6 4.9914 -1.7069 1.1753 8 6 5.7270 -0.4887 1.7612 9 6 5.6444 -0.5021 3.2948 10 6 7.0232 -1.0851 3.7086 11 6 7.9550 -0.4937 2.6205 12 7 7.1436 -0.5018 1.3820 13 6 7.4712 0.6497 0.5306 14 6 8.9890 0.7433 0.3612 15 6 9.3301 1.9422 -0.5261 16 6 10.8250 2.0340 -0.6933 17 1 11.4675 1.3100 -0.2143 18 6 11.3726 3.0430 -1.4569 19 7 12.6772 3.1235 -1.6025 20 14 10.2613 4.2957 -2.2849 21 1 10.0432 5.4449 -1.3701 22 1 10.9012 4.7741 -3.5366 23 1 8.9564 3.6639 -2.6061 24 6 5.0172 0.7092 1.1897 25 8 5.1199 1.8440 1.6052 26 8 2.1131 1.7810 1.3436 27 6 0.8654 2.1749 1.9179 28 1 -0.3634 0.4092 -0.9427 29 1 -0.3633 -1.0210 0.1169 30 1 -0.3633 0.6118 0.8257 31 1 1.3818 1.9830 -0.5781 32 1 3.3259 0.8803 -1.6520 33 1 3.8479 2.2387 -0.6267 34 1 3.3897 -1.5432 -0.2922 35 1 5.0269 -1.2832 -0.9622 36 1 4.2160 -2.0593 1.8555 37 1 5.6905 -2.5079 0.9348 38 1 5.5201 0.5086 3.6836 39 1 4.8346 -1.1490 3.6323 40 1 7.0152 -2.1742 3.6655 41 1 7.3120 -0.7374 4.7005 42 1 8.8399 -1.1182 2.4986 43 1 8.2418 0.5255 2.8797 44 1 7.0038 0.5241 -0.4461 45 1 7.1005 1.5629 0.9960 46 1 9.4565 0.8689 1.3378 47 1 9.3596 -0.1699 -0.1043 48 1 8.8627 1.8161 -1.5027 49 1 8.9594 2.8556 -0.0610 50 1 13.0623 3.8331 -2.1401 51 1 0.2980 2.7559 1.1908 52 1 0.2973 1.2874 2.1967 53 1 1.0489 2.7821 2.8044 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274039819.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:00 Heat of formation + Delta-G solvation = -133.518832 kcal Electronic energy + Delta-G solvation = -32387.425198 eV Core-core repulsion = 28258.673128 eV Total energy + Delta-G solvation = -4128.752070 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.38726 -40.26790 -38.78441 -37.35738 -36.96594 -36.22635 -34.44808 -33.31488 -32.05820 -30.13890 -28.92953 -28.22518 -27.66777 -26.95729 -25.23404 -24.24999 -23.62542 -22.83887 -21.82999 -21.12293 -19.84283 -18.90694 -18.45580 -18.38789 -17.75248 -17.07987 -17.01353 -16.74552 -16.34230 -16.17273 -15.85091 -15.41887 -15.36501 -14.93822 -14.89416 -14.72939 -14.56001 -14.51974 -14.34423 -13.81428 -13.73365 -13.52497 -13.36801 -13.26152 -13.25798 -13.01260 -12.73106 -12.55195 -12.45871 -12.38157 -12.22669 -12.04566 -11.89331 -11.83140 -11.59468 -11.53854 -11.45051 -11.26583 -11.01597 -10.87496 -10.80288 -10.80001 -9.67426 -9.29834 -8.32894 -6.36562 1.31099 1.31955 1.44816 1.52715 1.98335 2.32368 2.59896 2.81832 2.91473 3.01711 3.29345 3.53418 3.70133 3.73213 3.90883 3.93288 4.11730 4.15260 4.18193 4.24192 4.26226 4.28108 4.30555 4.43143 4.46243 4.48056 4.52479 4.55725 4.60574 4.71353 4.73607 4.82434 4.84437 4.88378 4.88626 4.89550 4.99657 5.00951 5.08454 5.16218 5.22923 5.29166 5.43295 5.51830 5.59812 5.62195 5.89748 5.98837 6.01640 6.10614 6.17851 6.25721 6.70058 7.22015 7.27849 8.83854 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012053 B = 0.003391 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2322.463432 B = 8254.192924 C = 9616.237193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.400 6.400 3 C 0.226 3.774 4 C 0.134 3.866 5 N -0.605 5.605 6 C 0.106 3.894 7 C -0.101 4.101 8 C 0.058 3.942 9 C -0.118 4.118 10 C -0.113 4.113 11 C 0.031 3.969 12 N -0.490 5.490 13 C 0.049 3.951 14 C -0.086 4.086 15 C -0.006 4.006 16 C -0.530 4.530 17 H 0.036 0.964 18 C 0.007 3.993 19 N -0.948 5.948 20 Si 0.947 3.053 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.252 1.252 24 C 0.515 3.485 25 O -0.565 6.565 26 O -0.409 6.409 27 C 0.021 3.979 28 H 0.057 0.943 29 H 0.099 0.901 30 H 0.051 0.949 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.081 0.919 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.110 0.890 38 H 0.048 0.952 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.028 0.972 44 H 0.066 0.934 45 H 0.028 0.972 46 H 0.049 0.951 47 H 0.060 0.940 48 H 0.018 0.982 49 H 0.003 0.997 50 H 0.268 0.732 51 H 0.060 0.940 52 H 0.056 0.944 53 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.407 -11.706 5.472 33.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 O -0.320 6.320 3 C 0.130 3.870 4 C 0.011 3.989 5 N -0.338 5.338 6 C -0.015 4.015 7 C -0.139 4.139 8 C -0.035 4.035 9 C -0.157 4.157 10 C -0.150 4.150 11 C -0.096 4.096 12 N -0.215 5.215 13 C -0.079 4.079 14 C -0.124 4.124 15 C -0.044 4.044 16 C -0.568 4.568 17 H 0.054 0.946 18 C -0.190 4.190 19 N -0.589 5.589 20 Si 0.770 3.230 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.176 1.176 24 C 0.302 3.698 25 O -0.444 6.444 26 O -0.330 6.330 27 C -0.075 4.075 28 H 0.076 0.924 29 H 0.118 0.882 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.146 0.854 33 H 0.099 0.901 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.121 0.879 40 H 0.119 0.881 41 H 0.104 0.896 42 H 0.109 0.891 43 H 0.046 0.954 44 H 0.085 0.915 45 H 0.046 0.954 46 H 0.068 0.932 47 H 0.078 0.922 48 H 0.036 0.964 49 H 0.022 0.978 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.074 0.926 53 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -30.892 -11.578 5.335 33.419 hybrid contribution -0.345 2.184 -0.114 2.214 sum -31.237 -9.393 5.221 33.034 Atomic orbital electron populations 1.23257 0.79708 1.04358 1.01189 1.88009 1.21275 1.28840 1.93910 1.23969 0.95283 0.83819 0.83915 1.21617 0.86593 0.94932 0.95764 1.48147 1.43506 1.10485 1.31622 1.22314 1.02616 0.78068 0.98544 1.22631 0.99333 0.95868 0.96113 1.22217 0.89472 0.94882 0.96935 1.22665 1.00000 1.01463 0.91546 1.22739 0.92337 1.01980 0.97979 1.23274 0.97870 0.99593 0.88885 1.63990 1.01434 1.39784 1.16299 1.22390 0.96797 0.91677 0.97001 1.21324 0.93300 0.98461 0.99339 1.19437 0.94575 0.94788 0.95607 1.21426 0.92126 1.12674 1.30564 0.94605 1.25958 0.96396 0.99790 0.96817 1.70052 1.12330 1.34699 1.41770 0.85705 0.79771 0.79108 0.78367 1.19648 1.20073 1.17564 1.21128 0.78657 0.89667 0.80326 1.90664 1.65481 1.23962 1.64257 1.88196 1.31818 1.82520 1.30421 1.23078 0.85694 0.99580 0.99115 0.92447 0.88250 0.93081 0.89745 0.85430 0.90071 0.87991 0.90851 0.88206 0.87150 0.93267 0.87866 0.88064 0.89562 0.89143 0.95355 0.91519 0.95402 0.93231 0.92170 0.96395 0.97826 0.92359 0.92194 0.92597 0.90094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 10.68 113.37 1.21 1.31 16 2 O -0.40 -6.57 9.46 -126.21 -1.19 -7.76 16 3 C 0.23 4.19 3.15 71.98 0.23 4.42 16 4 C 0.13 2.83 6.07 86.38 0.52 3.36 16 5 N -0.61 -15.15 2.76 -818.12 -2.26 -17.40 16 6 C 0.11 1.98 7.20 86.87 0.63 2.60 16 7 C -0.10 -1.85 6.42 31.46 0.20 -1.65 16 8 C 0.06 1.53 1.00 3.27 0.00 1.53 16 9 C -0.12 -2.80 6.05 31.59 0.19 -2.61 16 10 C -0.11 -2.35 7.08 32.07 0.23 -2.13 16 11 C 0.03 0.90 5.33 86.76 0.46 1.36 16 12 N -0.49 -14.98 4.95 -841.80 -4.17 -19.14 16 13 C 0.05 1.88 3.97 86.30 0.34 2.22 16 14 C -0.09 -3.79 4.83 30.60 0.15 -3.64 16 15 C -0.01 -0.32 4.04 29.85 0.12 -0.20 16 16 C -0.53 -32.52 9.66 25.60 0.25 -32.27 16 17 H 0.04 2.38 7.99 -2.91 -0.02 2.36 16 18 C 0.01 0.45 5.47 84.65 0.46 0.92 16 19 N -0.95 -61.53 13.96 21.45 0.30 -61.23 16 20 Si 0.95 47.12 27.47 68.60 1.88 49.00 16 21 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 22 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 23 H -0.25 -11.86 6.54 99.48 0.65 -11.21 16 24 C 0.52 16.48 4.41 87.62 0.39 16.87 16 25 O -0.57 -23.28 15.40 -3.03 -0.05 -23.32 16 26 O -0.41 -9.99 9.97 -126.21 -1.26 -11.25 16 27 C 0.02 0.34 9.76 113.37 1.11 1.44 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 0.45 4.80 -2.39 -0.01 0.44 16 31 H 0.09 1.13 7.56 -2.39 -0.02 1.11 16 32 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.08 2.06 7.92 -2.39 -0.02 2.04 16 34 H 0.10 1.53 7.31 -2.39 -0.02 1.52 16 35 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.10 1.44 7.45 -2.39 -0.02 1.42 16 37 H 0.11 1.81 8.07 -2.38 -0.02 1.79 16 38 H 0.05 1.45 7.52 -2.39 -0.02 1.44 16 39 H 0.10 1.86 7.39 -2.39 -0.02 1.85 16 40 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.09 2.51 8.14 -2.39 -0.02 2.49 16 43 H 0.03 0.96 7.03 -2.39 -0.02 0.94 16 44 H 0.07 2.51 7.94 -2.39 -0.02 2.49 16 45 H 0.03 1.22 5.78 -2.39 -0.01 1.21 16 46 H 0.05 2.20 6.49 -2.39 -0.02 2.19 16 47 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 48 H 0.02 0.91 7.20 -2.39 -0.02 0.89 16 49 H 0.00 0.18 7.57 -2.39 -0.02 0.16 16 50 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 51 H 0.06 0.68 7.80 -2.39 -0.02 0.67 16 52 H 0.06 0.75 6.27 -2.39 -0.01 0.73 16 53 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 Total: -1.00 -81.74 403.54 0.57 -81.17 By element: Atomic # 1 Polarization: 15.58 SS G_CDS: 0.82 Total: 16.40 kcal Atomic # 6 Polarization: -12.94 SS G_CDS: 6.49 Total: -6.45 kcal Atomic # 7 Polarization: -91.65 SS G_CDS: -6.12 Total: -97.78 kcal Atomic # 8 Polarization: -39.84 SS G_CDS: -2.50 Total: -42.34 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 1.88 Total: 49.00 kcal Total: -81.74 0.57 -81.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274039819.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.353 kcal (2) G-P(sol) polarization free energy of solvation -81.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds