Wall clock time and date at job start Sat Apr 11 2020 06:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42908 * 113.99984 * 2 1 4 4 C 1.52993 * 109.47132 * 160.22234 * 3 2 1 5 5 N 1.46499 * 109.47505 * 60.00386 * 4 3 2 6 6 C 1.46881 * 124.37087 * 89.99144 * 5 4 3 7 7 C 1.54706 * 105.51958 * 196.82706 * 6 5 4 8 8 C 1.53621 * 101.51418 * 335.47864 * 7 6 5 9 9 C 1.53599 * 110.85349 * 263.09586 * 8 7 6 10 10 C 1.55166 * 102.66143 * 217.72981 * 9 8 7 11 11 N 1.48624 * 103.36113 * 36.57465 * 10 9 8 12 12 C 1.46902 * 110.99570 * 200.85340 * 11 10 9 13 13 C 1.52996 * 109.47245 * 287.44344 * 12 11 10 14 14 C 1.53001 * 109.47101 * 180.02562 * 13 12 11 15 15 C 1.50706 * 109.47153 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99722 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00100 * 180.02562 * 15 14 13 18 18 N 1.31510 * 120.00020 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99798 * 0.02562 * 17 15 14 20 20 H 1.48505 * 109.47010 * 89.99948 * 19 17 15 21 21 H 1.48502 * 109.46977 * 209.99576 * 19 17 15 22 22 H 1.48491 * 109.47396 * 330.00151 * 19 17 15 23 23 C 1.48186 * 105.85889 * 321.39213 * 11 10 9 24 24 C 1.34748 * 124.37055 * 269.70480 * 5 4 3 25 25 O 1.21282 * 125.13233 * 358.94885 * 24 5 4 26 26 O 1.42894 * 109.46948 * 280.22681 * 3 2 1 27 27 C 1.42903 * 114.00198 * 78.33162 * 26 3 2 28 28 H 1.08995 * 109.47588 * 68.01592 * 1 2 3 29 29 H 1.09001 * 109.47187 * 308.00877 * 1 2 3 30 30 H 1.09003 * 109.46496 * 188.01489 * 1 2 3 31 31 H 1.09000 * 109.46406 * 40.22120 * 3 2 1 32 32 H 1.09007 * 109.47068 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.47328 * 299.99744 * 4 3 2 34 34 H 1.08999 * 110.23970 * 315.84588 * 6 5 4 35 35 H 1.09004 * 110.23436 * 77.73162 * 6 5 4 36 36 H 1.09002 * 111.01305 * 93.53783 * 7 6 5 37 37 H 1.09001 * 111.01862 * 217.37606 * 7 6 5 38 38 H 1.09005 * 110.77292 * 336.01959 * 9 8 7 39 39 H 1.09005 * 110.77702 * 99.43603 * 9 8 7 40 40 H 1.09001 * 110.63826 * 278.10192 * 10 9 8 41 41 H 1.09002 * 110.78501 * 155.11301 * 10 9 8 42 42 H 1.08997 * 109.47414 * 47.44709 * 12 11 10 43 43 H 1.09008 * 109.46717 * 167.44615 * 12 11 10 44 44 H 1.08997 * 109.47213 * 300.00488 * 13 12 11 45 45 H 1.08999 * 109.47125 * 60.00671 * 13 12 11 46 46 H 1.08997 * 109.47330 * 300.00225 * 14 13 12 47 47 H 1.08998 * 109.46857 * 60.00786 * 14 13 12 48 48 H 0.97002 * 120.00113 * 179.97438 * 18 17 15 49 49 H 1.09003 * 110.01511 * 265.81848 * 23 11 10 50 50 H 1.08999 * 110.01693 * 144.42286 * 23 11 10 51 51 H 1.08997 * 109.47319 * 40.61058 * 27 26 3 52 52 H 1.09002 * 109.47242 * 160.61779 * 27 26 3 53 53 H 1.08998 * 109.46473 * 280.60992 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.4576 1.2193 0.4881 5 7 4.2226 0.3444 -0.4038 6 6 4.9445 0.8040 -1.5976 7 6 5.2175 -0.4697 -2.4322 8 6 5.1834 -1.5590 -1.3495 9 6 6.6033 -1.9032 -0.8753 10 6 6.5280 -3.4384 -0.6628 11 7 5.6410 -3.8946 -1.7646 12 6 5.0555 -5.2070 -1.4599 13 6 6.1325 -6.2867 -1.5818 14 6 5.5225 -7.6536 -1.2651 15 6 6.5833 -8.7173 -1.3857 16 1 7.5918 -8.4455 -1.6604 17 6 6.2663 -10.0375 -1.1455 18 7 7.1921 -10.9656 -1.2503 19 14 4.5218 -10.5077 -0.6710 20 1 3.7373 -10.8010 -1.8974 21 1 4.5525 -11.7123 0.1968 22 1 3.8888 -9.3837 0.0644 23 6 4.5880 -2.8598 -1.8917 24 6 4.3592 -0.9851 -0.2319 25 8 3.8864 -1.6225 0.6852 26 8 1.9854 1.8379 -1.3258 27 6 0.7104 2.3452 -1.7248 28 1 -0.3634 0.3847 -0.9529 29 1 -0.3633 0.6328 0.8097 30 1 -0.3632 -1.0177 0.1433 31 1 1.4411 1.9565 0.6636 32 1 3.9009 2.2152 0.4885 33 1 3.4765 0.8133 1.4994 34 1 4.3290 1.5020 -2.1651 35 1 5.8838 1.2772 -1.3112 36 1 4.4323 -0.6284 -3.1713 37 1 6.1965 -0.4222 -2.9092 38 1 7.3376 -1.6547 -1.6415 39 1 6.8324 -1.3941 0.0609 40 1 6.0872 -3.6709 0.3067 41 1 7.5159 -3.8903 -0.7525 42 1 4.6599 -5.2014 -0.4443 43 1 4.2492 -5.4171 -2.1628 44 1 6.5281 -6.2923 -2.5974 45 1 6.9388 -6.0767 -0.8790 46 1 5.1266 -7.6484 -0.2495 47 1 4.7165 -7.8635 -1.9682 48 1 6.9692 -11.8943 -1.0809 49 1 3.7139 -3.1430 -1.3052 50 1 4.3113 -2.7356 -2.9386 51 1 0.2561 2.8819 -0.8920 52 1 0.8371 3.0236 -2.5685 53 1 0.0656 1.5168 -2.0183 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274040703.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:11 Heat of formation + Delta-G solvation = -140.046809 kcal Electronic energy + Delta-G solvation = -31255.885268 eV Core-core repulsion = 27126.850124 eV Total energy + Delta-G solvation = -4129.035144 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.15153 -40.24460 -39.06615 -37.39815 -36.96988 -36.17413 -34.65270 -33.28477 -31.36037 -30.25877 -29.23998 -28.19001 -27.67386 -26.97290 -25.08053 -24.18252 -23.72219 -22.52534 -21.78720 -21.56366 -19.93369 -18.90433 -18.46809 -18.39614 -17.51380 -17.09469 -16.97170 -16.47704 -16.38837 -16.06147 -15.96987 -15.48330 -15.34558 -14.95065 -14.85585 -14.79354 -14.55615 -14.53963 -14.39552 -13.94678 -13.67159 -13.56776 -13.39226 -13.29202 -13.18697 -12.87598 -12.81610 -12.66115 -12.51098 -12.39476 -12.31985 -12.25544 -11.95320 -11.78280 -11.59503 -11.44347 -11.40090 -11.23495 -11.07641 -10.76939 -10.76785 -10.61172 -9.62908 -9.46457 -8.30127 -6.33725 1.33601 1.35741 1.48414 1.56268 1.99212 2.35267 2.63687 2.80885 2.97200 3.04573 3.35679 3.40249 3.57065 3.75174 3.92024 3.96280 4.05251 4.12192 4.17648 4.26053 4.28573 4.31194 4.32524 4.35345 4.47621 4.54230 4.54818 4.56880 4.62070 4.65865 4.68332 4.79478 4.81824 4.85861 4.88527 4.92314 4.94358 4.96893 5.07983 5.11790 5.15471 5.23531 5.48966 5.57230 5.60948 5.64668 5.89030 5.99598 6.01505 6.09537 6.18501 6.29417 6.73423 7.23888 7.30423 8.86686 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017341 B = 0.002334 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1614.324943 B =11991.494578 C =12940.534828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.412 6.412 3 C 0.219 3.781 4 C 0.138 3.862 5 N -0.606 5.606 6 C 0.107 3.893 7 C -0.108 4.108 8 C -0.104 4.104 9 C -0.086 4.086 10 C 0.029 3.971 11 N -0.512 5.512 12 C 0.056 3.944 13 C -0.081 4.081 14 C -0.011 4.011 15 C -0.530 4.530 16 H 0.033 0.967 17 C 0.003 3.997 18 N -0.950 5.950 19 Si 0.951 3.049 20 H -0.263 1.263 21 H -0.281 1.281 22 H -0.254 1.254 23 C 0.060 3.940 24 C 0.527 3.473 25 O -0.567 6.567 26 O -0.399 6.399 27 C 0.017 3.983 28 H 0.058 0.942 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.135 0.865 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.084 0.916 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.023 0.977 41 H 0.086 0.914 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.056 0.944 45 H 0.044 0.956 46 H 0.012 0.988 47 H 0.019 0.981 48 H 0.267 0.733 49 H 0.023 0.977 50 H 0.099 0.901 51 H 0.059 0.941 52 H 0.099 0.901 53 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.426 38.623 -0.707 40.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 O -0.333 6.333 3 C 0.123 3.877 4 C 0.015 3.985 5 N -0.339 5.339 6 C -0.015 4.015 7 C -0.146 4.146 8 C -0.108 4.108 9 C -0.124 4.124 10 C -0.099 4.099 11 N -0.236 5.236 12 C -0.072 4.072 13 C -0.119 4.119 14 C -0.049 4.049 15 C -0.568 4.568 16 H 0.052 0.948 17 C -0.193 4.193 18 N -0.591 5.591 19 Si 0.774 3.226 20 H -0.188 1.188 21 H -0.207 1.207 22 H -0.178 1.178 23 C -0.068 4.068 24 C 0.315 3.685 25 O -0.446 6.446 26 O -0.320 6.320 27 C -0.079 4.079 28 H 0.076 0.924 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.104 0.896 32 H 0.153 0.847 33 H 0.106 0.894 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.094 0.906 40 H 0.042 0.958 41 H 0.105 0.895 42 H 0.038 0.962 43 H 0.092 0.908 44 H 0.075 0.925 45 H 0.063 0.937 46 H 0.030 0.970 47 H 0.038 0.962 48 H 0.076 0.924 49 H 0.042 0.958 50 H 0.117 0.883 51 H 0.078 0.922 52 H 0.117 0.883 53 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -12.138 37.966 -0.769 39.867 hybrid contribution -1.660 -0.924 1.359 2.335 sum -13.797 37.043 0.589 39.533 Atomic orbital electron populations 1.23160 0.80176 1.03365 1.01317 1.88187 1.21005 1.30233 1.93865 1.24207 0.96037 0.82684 0.84796 1.21643 0.86835 0.96698 0.93297 1.48164 1.50505 1.07031 1.28167 1.22377 0.97251 0.97145 0.84679 1.22698 1.05396 0.90952 0.95504 1.21509 0.96701 0.96652 0.95954 1.22364 0.93858 0.93544 1.02604 1.23367 0.98164 0.96345 0.92013 1.64952 1.16507 1.01315 1.40799 1.22236 0.97155 0.89325 0.98499 1.21188 0.97016 0.92764 1.00899 1.19507 0.95756 0.93604 0.96045 1.21463 0.96656 0.92296 1.46412 0.94844 1.26014 1.02034 0.96429 0.94838 1.70064 1.35833 1.01568 1.51593 0.85648 0.79637 0.78106 0.79197 1.18794 1.20659 1.17753 1.22709 0.93120 0.89623 1.01396 1.20675 0.79085 0.82902 0.85854 1.90683 1.51939 1.65149 1.36805 1.87993 1.32757 1.78099 1.33160 1.23181 0.84823 0.98493 1.01383 0.92360 0.92139 0.90443 0.89638 0.84689 0.89388 0.88593 0.88789 0.89762 0.86321 0.86771 0.90641 0.95838 0.89533 0.96188 0.90778 0.92510 0.93697 0.96990 0.96239 0.92447 0.95819 0.88285 0.92233 0.88252 0.93976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 10.46 113.37 1.19 1.42 16 2 O -0.41 -9.26 9.98 -126.21 -1.26 -10.52 16 3 C 0.22 3.22 3.15 71.98 0.23 3.45 16 4 C 0.14 1.96 6.07 86.38 0.52 2.48 16 5 N -0.61 -11.04 2.76 -818.13 -2.26 -13.30 16 6 C 0.11 1.19 7.21 86.89 0.63 1.82 16 7 C -0.11 -1.43 6.19 31.38 0.19 -1.24 16 8 C -0.10 -2.30 0.77 -52.66 -0.04 -2.34 16 9 C -0.09 -1.81 6.21 31.54 0.20 -1.61 16 10 C 0.03 0.86 5.92 86.71 0.51 1.38 16 11 N -0.51 -16.33 5.26 -883.53 -4.64 -20.98 16 12 C 0.06 2.11 4.71 86.30 0.41 2.51 16 13 C -0.08 -3.52 5.24 30.59 0.16 -3.36 16 14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 15 C -0.53 -32.52 9.66 25.60 0.25 -32.27 16 16 H 0.03 2.23 7.99 -2.91 -0.02 2.21 16 17 C 0.00 0.21 5.47 84.66 0.46 0.68 16 18 N -0.95 -61.83 13.96 21.45 0.30 -61.53 16 19 Si 0.95 46.88 27.47 68.60 1.88 48.76 16 20 H -0.26 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 22 H -0.25 -11.93 6.54 99.48 0.65 -11.28 16 23 C 0.06 1.67 5.99 86.05 0.52 2.19 16 24 C 0.53 14.03 6.15 87.52 0.54 14.57 16 25 O -0.57 -20.82 17.07 -3.04 -0.05 -20.88 16 26 O -0.40 -5.53 9.49 -126.21 -1.20 -6.73 16 27 C 0.02 0.14 10.14 113.37 1.15 1.29 16 28 H 0.06 0.73 5.17 -2.39 -0.01 0.72 16 29 H 0.06 0.65 7.92 -2.39 -0.02 0.63 16 30 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 0.79 7.37 -2.39 -0.02 0.78 16 32 H 0.14 0.87 8.14 -2.38 -0.02 0.85 16 33 H 0.09 1.50 7.93 -2.39 -0.02 1.48 16 34 H 0.10 0.93 7.31 -2.39 -0.02 0.91 16 35 H 0.09 0.62 8.14 -2.38 -0.02 0.60 16 36 H 0.08 1.15 7.59 -2.39 -0.02 1.13 16 37 H 0.12 1.03 7.45 -2.39 -0.02 1.01 16 38 H 0.11 1.81 7.46 -2.38 -0.02 1.79 16 39 H 0.07 1.53 7.84 -2.38 -0.02 1.51 16 40 H 0.02 0.81 7.80 -2.39 -0.02 0.79 16 41 H 0.09 2.55 7.82 -2.39 -0.02 2.53 16 42 H 0.02 0.80 7.83 -2.39 -0.02 0.78 16 43 H 0.07 2.66 8.08 -2.38 -0.02 2.64 16 44 H 0.06 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.04 1.99 7.38 -2.39 -0.02 1.97 16 46 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 47 H 0.02 0.95 7.57 -2.39 -0.02 0.94 16 48 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 49 H 0.02 0.80 7.09 -2.39 -0.02 0.78 16 50 H 0.10 2.41 7.40 -2.39 -0.02 2.39 16 51 H 0.06 0.29 7.69 -2.39 -0.02 0.27 16 52 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 53 H 0.04 0.41 5.77 -2.39 -0.01 0.40 16 Total: -1.00 -83.57 408.82 0.62 -82.95 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 0.82 Total: 11.71 kcal Atomic # 6 Polarization: -16.52 SS G_CDS: 7.03 Total: -9.49 kcal Atomic # 7 Polarization: -89.20 SS G_CDS: -6.60 Total: -95.80 kcal Atomic # 8 Polarization: -35.62 SS G_CDS: -2.51 Total: -38.12 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 1.88 Total: 48.76 kcal Total: -83.57 0.62 -82.95 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274040703.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.100 kcal (2) G-P(sol) polarization free energy of solvation -83.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds