Wall clock time and date at job start Sat Apr 11 2020 06:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42898 * 114.00186 * 2 1 4 4 C 1.52997 * 109.47319 * 180.02562 * 3 2 1 5 5 O 1.42904 * 109.47396 * 64.99884 * 4 3 2 6 6 C 1.42896 * 114.00313 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47008 * 80.00172 * 6 5 4 8 8 C 1.46881 * 124.36827 * 105.00161 * 7 6 5 9 9 C 1.54712 * 105.52100 * 196.77997 * 8 7 6 10 10 C 1.53609 * 101.50738 * 335.48386 * 9 8 7 11 11 C 1.53253 * 111.08686 * 144.98951 * 10 9 8 12 12 C 1.54647 * 104.67059 * 120.48387 * 11 10 9 13 13 N 1.48645 * 104.63996 * 23.67808 * 12 11 10 14 14 C 1.46900 * 111.00387 * 201.49429 * 13 12 11 15 15 C 1.52999 * 109.46752 * 290.12442 * 14 13 12 16 16 C 1.53005 * 109.46729 * 179.97438 * 15 14 13 17 17 C 1.50705 * 109.46867 * 180.02562 * 16 15 14 18 18 H 1.07997 * 119.99810 * 0.02562 * 17 16 15 19 19 C 1.37876 * 119.99787 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99801 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00000 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.46994 * 59.99827 * 21 19 17 23 23 H 1.48496 * 109.47091 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.47132 * 300.00134 * 21 19 17 25 25 C 1.48804 * 104.38090 * 321.14564 * 13 12 11 26 26 C 1.34746 * 124.37546 * 284.69999 * 7 6 5 27 27 O 1.21288 * 125.13298 * 359.02319 * 26 7 6 28 28 H 1.08999 * 109.46857 * 59.99535 * 1 2 3 29 29 H 1.08998 * 109.46946 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46918 * 299.99649 * 1 2 3 31 31 H 1.09002 * 109.47259 * 300.00293 * 3 2 1 32 32 H 1.09001 * 109.47074 * 60.00315 * 3 2 1 33 33 H 1.09001 * 109.47630 * 185.00204 * 4 3 2 34 34 H 1.09004 * 109.47346 * 305.00335 * 4 3 2 35 35 H 1.09002 * 109.46988 * 200.00289 * 6 5 4 36 36 H 1.09004 * 109.47127 * 319.99959 * 6 5 4 37 37 H 1.08999 * 110.24067 * 315.79345 * 8 7 6 38 38 H 1.08999 * 110.24268 * 77.68573 * 8 7 6 39 39 H 1.08999 * 111.01829 * 93.53267 * 9 8 7 40 40 H 1.08999 * 111.02204 * 217.42410 * 9 8 7 41 41 H 1.09003 * 110.39668 * 239.27668 * 11 10 9 42 42 H 1.08996 * 110.39929 * 1.68794 * 11 10 9 43 43 H 1.08996 * 110.40274 * 142.47105 * 12 11 10 44 44 H 1.09005 * 110.40151 * 264.88806 * 12 11 10 45 45 H 1.08997 * 109.46893 * 50.12417 * 14 13 12 46 46 H 1.08992 * 109.46961 * 170.12547 * 14 13 12 47 47 H 1.08993 * 109.47462 * 300.00169 * 15 14 13 48 48 H 1.09001 * 109.47114 * 60.00265 * 15 14 13 49 49 H 1.08997 * 109.47232 * 300.00169 * 16 15 14 50 50 H 1.09001 * 109.46779 * 60.00461 * 16 15 14 51 51 H 0.97004 * 119.99396 * 179.97438 * 20 19 17 52 52 H 1.09003 * 110.45485 * 279.82475 * 25 13 12 53 53 H 1.09000 * 110.45818 * 157.26512 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3811 0.4191 -1.3246 7 7 5.7943 -0.7657 -0.5685 8 6 6.1826 -2.0445 -1.1779 9 6 6.1125 -3.0856 -0.0357 10 6 6.3033 -2.1960 1.2020 11 6 5.4760 -2.7118 2.3845 12 6 6.5158 -3.0074 3.4905 13 7 7.6794 -2.1468 3.1519 14 6 8.9098 -2.6573 3.7712 15 6 8.8410 -2.4530 5.2859 16 6 10.1222 -2.9853 5.9310 17 6 10.0542 -2.7846 7.4230 18 1 9.1841 -2.3239 7.8668 19 6 11.1029 -3.1892 8.2215 20 7 12.1627 -3.7498 7.6810 21 14 11.0184 -2.9411 10.0711 22 1 9.8483 -3.6755 10.6160 23 1 12.2619 -3.4576 10.6971 24 1 10.8773 -1.4934 10.3704 25 6 7.7646 -2.2076 1.6675 26 6 5.8728 -0.8213 0.7755 27 8 5.6302 0.0989 1.5275 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 3.9786 2.1764 0.0890 34 1 3.8515 0.5681 0.8409 35 1 5.6580 0.2966 -2.3718 36 1 5.8771 1.3006 -0.9184 37 1 5.4863 -2.3100 -1.9733 38 1 7.1973 -1.9822 -1.5711 39 1 5.1410 -3.5795 -0.0160 40 1 6.9183 -3.8147 -0.1211 41 1 4.7732 -1.9483 2.7182 42 1 4.9457 -3.6231 2.1084 43 1 6.1166 -2.7393 4.4687 44 1 6.8024 -4.0589 3.4712 45 1 9.0128 -3.7201 3.5522 46 1 9.7686 -2.1189 3.3705 47 1 8.7380 -1.3902 5.5049 48 1 7.9821 -2.9914 5.6865 49 1 10.2248 -4.0481 5.7120 50 1 10.9813 -2.4472 5.5304 51 1 12.9006 -4.0341 8.2427 52 1 8.2579 -3.1269 1.3516 53 1 8.2947 -1.3374 1.2804 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274042611.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:18 Heat of formation + Delta-G solvation = -143.279741 kcal Electronic energy + Delta-G solvation = -30655.849832 eV Core-core repulsion = 26526.674498 eV Total energy + Delta-G solvation = -4129.175334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.22009 -39.78069 -38.97173 -38.05175 -37.37648 -36.02830 -34.40891 -32.65773 -31.39117 -30.69968 -29.27089 -28.04250 -27.35639 -26.73437 -25.18505 -23.93292 -23.68442 -22.69076 -22.17682 -21.31852 -20.00357 -18.51659 -18.43361 -18.00190 -17.49641 -17.32066 -16.74167 -16.67208 -16.57775 -16.31757 -16.08269 -15.81492 -15.50132 -15.19997 -15.13183 -14.79180 -14.45198 -14.29807 -14.21949 -13.81683 -13.64384 -13.44704 -13.29477 -13.21524 -13.07409 -12.78071 -12.72924 -12.58580 -12.45986 -12.37291 -12.25787 -12.21115 -12.15034 -11.79600 -11.71769 -11.42577 -11.34381 -11.10585 -11.00952 -10.68560 -10.62542 -10.55042 -9.86220 -9.38685 -8.20476 -6.31200 1.38834 1.42269 1.44052 1.50244 2.01204 2.40506 2.71418 2.81458 2.96983 3.12099 3.26306 3.44959 3.52293 3.90454 3.93280 4.04969 4.15553 4.16900 4.18602 4.24376 4.29126 4.31757 4.40102 4.41267 4.47926 4.52951 4.53541 4.55809 4.62017 4.68965 4.72317 4.75658 4.81445 4.82170 4.85669 4.93360 4.96990 5.02979 5.06397 5.12326 5.17358 5.22841 5.51016 5.52081 5.72946 5.85078 5.92129 5.97579 6.03955 6.07622 6.19954 6.27787 6.84428 7.12999 7.37417 8.91062 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017116 B = 0.002057 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.464116 B =13607.936645 C =14358.103235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.414 6.414 3 C 0.064 3.936 4 C 0.050 3.950 5 O -0.396 6.396 6 C 0.281 3.719 7 N -0.634 5.634 8 C 0.101 3.899 9 C -0.115 4.115 10 C -0.098 4.098 11 C -0.095 4.095 12 C 0.035 3.965 13 N -0.529 5.529 14 C 0.061 3.939 15 C -0.088 4.088 16 C 0.028 3.972 17 C -0.545 4.545 18 H 0.055 0.945 19 C 0.000 4.000 20 N -0.931 5.931 21 Si 0.965 3.035 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.269 1.269 25 C 0.060 3.940 26 C 0.527 3.473 27 O -0.553 6.553 28 H 0.052 0.948 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.068 0.932 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.153 0.847 36 H 0.064 0.936 37 H 0.100 0.900 38 H 0.095 0.905 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.055 0.945 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.066 0.934 47 H 0.042 0.958 48 H 0.047 0.953 49 H -0.005 1.005 50 H -0.008 1.008 51 H 0.264 0.736 52 H 0.078 0.922 53 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.476 4.331 -26.259 33.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C -0.012 4.012 4 C -0.027 4.027 5 O -0.311 6.311 6 C 0.122 3.878 7 N -0.376 5.376 8 C -0.020 4.020 9 C -0.153 4.153 10 C -0.102 4.102 11 C -0.133 4.133 12 C -0.093 4.093 13 N -0.253 5.253 14 C -0.067 4.067 15 C -0.126 4.126 16 C -0.010 4.010 17 C -0.583 4.583 18 H 0.073 0.927 19 C -0.198 4.198 20 N -0.571 5.571 21 Si 0.789 3.211 22 H -0.192 1.192 23 H -0.205 1.205 24 H -0.194 1.194 25 C -0.068 4.068 26 C 0.316 3.684 27 O -0.431 6.431 28 H 0.071 0.929 29 H 0.112 0.888 30 H 0.067 0.933 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.074 0.926 35 H 0.170 0.830 36 H 0.082 0.918 37 H 0.119 0.881 38 H 0.113 0.887 39 H 0.114 0.886 40 H 0.134 0.866 41 H 0.074 0.926 42 H 0.122 0.878 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.058 0.942 46 H 0.084 0.916 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.014 0.986 50 H 0.010 0.990 51 H 0.073 0.927 52 H 0.096 0.904 53 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -20.594 5.190 -25.867 33.468 hybrid contribution 0.512 -0.153 1.282 1.389 sum -20.082 5.036 -24.585 32.141 Atomic orbital electron populations 1.22915 0.79500 1.03743 1.00846 1.87920 1.21482 1.28399 1.95584 1.22643 0.91716 0.85126 1.01730 1.22918 0.94018 0.98081 0.87652 1.87985 1.23870 1.81229 1.37972 1.22812 0.80203 0.86359 0.98388 1.49410 1.66111 1.15586 1.06521 1.22421 1.02447 0.80657 0.96514 1.22798 1.05475 0.96804 0.90176 1.21427 0.96710 0.94015 0.98078 1.22174 0.96767 1.01648 0.92754 1.23161 0.91275 0.95569 0.99275 1.65420 1.03699 1.49487 1.06733 1.22153 0.92023 0.97613 0.94937 1.21339 0.98019 0.99729 0.93539 1.18956 0.92899 0.94622 0.94484 1.21644 1.03148 1.39690 0.93807 0.92691 1.25974 0.94965 0.94759 1.04115 1.70084 1.07590 1.42037 1.37401 0.85508 0.77723 0.78826 0.79039 1.19152 1.20494 1.19442 1.22901 0.93833 1.01975 0.88057 1.20760 0.75048 0.89861 0.82760 1.90648 1.50797 1.43484 1.58146 0.92890 0.88827 0.93276 0.91379 0.90805 0.91046 0.92614 0.82974 0.91778 0.88145 0.88683 0.88595 0.86645 0.92612 0.87769 0.91466 0.92504 0.94237 0.91585 0.93960 0.93395 0.98640 0.98990 0.92711 0.90395 0.91206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -9.25 10.67 -144.35 -1.54 -10.79 16 3 C 0.06 1.21 6.32 71.98 0.45 1.66 16 4 C 0.05 1.11 5.76 71.98 0.41 1.52 16 5 O -0.40 -8.36 10.54 -144.35 -1.52 -9.88 16 6 C 0.28 4.54 7.05 127.77 0.90 5.44 16 7 N -0.63 -11.59 3.21 -936.21 -3.00 -14.59 16 8 C 0.10 1.04 7.34 86.89 0.64 1.67 16 9 C -0.11 -1.34 6.20 31.38 0.19 -1.15 16 10 C -0.10 -2.08 0.83 -52.66 -0.04 -2.13 16 11 C -0.10 -2.23 6.28 31.24 0.20 -2.03 16 12 C 0.03 0.99 5.76 86.53 0.50 1.49 16 13 N -0.53 -17.07 5.37 -882.08 -4.74 -21.81 16 14 C 0.06 2.20 4.81 86.30 0.41 2.62 16 15 C -0.09 -3.95 5.21 30.60 0.16 -3.79 16 16 C 0.03 1.54 4.97 29.85 0.15 1.69 16 17 C -0.54 -32.42 9.11 25.60 0.23 -32.18 16 18 H 0.05 3.18 7.74 -2.91 -0.02 3.16 16 19 C 0.00 -0.02 5.46 84.65 0.46 0.44 16 20 N -0.93 -57.67 13.29 21.45 0.28 -57.38 16 21 Si 0.96 45.60 29.54 68.60 2.03 47.63 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 23 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 24 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.06 1.47 5.66 86.06 0.49 1.96 16 26 C 0.53 13.58 5.99 87.52 0.52 14.11 16 27 O -0.55 -18.97 14.52 -3.06 -0.04 -19.02 16 28 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.42 8.09 -2.39 -0.02 1.40 16 34 H 0.06 1.63 4.84 -2.39 -0.01 1.61 16 35 H 0.15 1.25 8.10 -2.39 -0.02 1.23 16 36 H 0.06 1.11 7.93 -2.39 -0.02 1.09 16 37 H 0.10 0.69 8.14 -2.39 -0.02 0.68 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 0.99 7.60 -2.39 -0.02 0.97 16 40 H 0.12 0.89 7.46 -2.39 -0.02 0.87 16 41 H 0.06 1.58 7.48 -2.39 -0.02 1.56 16 42 H 0.10 1.80 7.43 -2.39 -0.02 1.79 16 43 H 0.07 2.12 7.79 -2.39 -0.02 2.10 16 44 H 0.06 1.48 7.81 -2.38 -0.02 1.46 16 45 H 0.04 1.36 7.88 -2.39 -0.02 1.34 16 46 H 0.07 2.41 8.13 -2.39 -0.02 2.39 16 47 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.05 2.10 7.27 -2.39 -0.02 2.08 16 49 H 0.00 -0.28 8.14 -2.39 -0.02 -0.30 16 50 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 51 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 52 H 0.08 1.55 7.32 -2.39 -0.02 1.53 16 53 H 0.07 1.80 7.84 -2.39 -0.02 1.79 16 Total: -1.00 -79.49 416.64 -0.74 -80.23 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.86 Total: 12.68 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.93 Total: -7.07 kcal Atomic # 7 Polarization: -86.32 SS G_CDS: -7.46 Total: -93.78 kcal Atomic # 8 Polarization: -36.59 SS G_CDS: -3.11 Total: -39.69 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -79.49 -0.74 -80.23 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274042611.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.052 kcal (2) G-P(sol) polarization free energy of solvation -79.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.742 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds