Wall clock time and date at job start Sat Apr 11 2020 06:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00092 * 2 1 4 4 C 1.53001 * 109.47168 * 179.97438 * 3 2 1 5 5 C 1.52995 * 109.47398 * 180.02562 * 4 3 2 6 6 N 1.46496 * 109.47363 * 179.97438 * 5 4 3 7 7 C 1.46269 * 118.81121 * 89.99768 * 6 5 4 8 8 C 1.52036 * 109.96972 * 162.90200 * 7 6 5 9 9 C 1.54607 * 110.76886 * 283.47183 * 8 7 6 10 10 C 1.54459 * 102.97567 * 207.05206 * 9 8 7 11 11 N 1.47501 * 107.26133 * 21.54387 * 10 9 8 12 12 C 1.46905 * 110.99800 * 123.21729 * 11 10 9 13 13 C 1.52997 * 109.46939 * 69.11264 * 12 11 10 14 14 C 1.53004 * 109.46999 * 180.02562 * 13 12 11 15 15 C 1.50697 * 109.47000 * 179.97438 * 14 13 12 16 16 H 1.08001 * 120.00207 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99956 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99832 * 179.97438 * 17 15 14 19 19 Si 1.86795 * 119.99913 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.47353 * 90.00156 * 19 17 15 21 21 H 1.48498 * 109.47180 * 210.00044 * 19 17 15 22 22 H 1.48499 * 109.47218 * 329.99737 * 19 17 15 23 23 C 1.48003 * 108.60775 * 0.92778 * 11 10 9 24 24 O 1.42111 * 110.96639 * 46.85037 * 8 7 6 25 25 C 1.43074 * 113.31568 * 294.26844 * 24 8 7 26 26 C 1.33836 * 118.81660 * 270.02076 * 6 5 4 27 27 O 1.21284 * 118.61501 * 2.71435 * 26 6 5 28 28 H 1.08995 * 109.47263 * 299.99592 * 1 2 3 29 29 H 1.09005 * 109.47550 * 59.99765 * 1 2 3 30 30 H 1.09006 * 109.47571 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46389 * 60.00321 * 3 2 1 32 32 H 1.08997 * 109.46855 * 300.00078 * 3 2 1 33 33 H 1.09001 * 109.47161 * 59.99868 * 4 3 2 34 34 H 1.09002 * 109.46857 * 300.00376 * 4 3 2 35 35 H 1.09006 * 109.47018 * 59.99414 * 5 4 3 36 36 H 1.08999 * 109.46800 * 300.00264 * 5 4 3 37 37 H 1.09004 * 109.38936 * 42.75377 * 7 6 5 38 38 H 1.08996 * 109.30875 * 283.00582 * 7 6 5 39 39 H 1.08999 * 110.70041 * 88.67294 * 9 8 7 40 40 H 1.08999 * 110.70583 * 325.43044 * 9 8 7 41 41 H 1.09006 * 109.88099 * 262.13169 * 10 9 8 42 42 H 1.08999 * 109.88446 * 140.96136 * 10 9 8 43 43 H 1.09005 * 109.47219 * 189.10891 * 12 11 10 44 44 H 1.08995 * 109.47146 * 309.10935 * 12 11 10 45 45 H 1.09005 * 109.46861 * 299.99847 * 13 12 11 46 46 H 1.08995 * 109.47470 * 59.99870 * 13 12 11 47 47 H 1.09005 * 109.47037 * 299.99552 * 14 13 12 48 48 H 1.08995 * 109.47269 * 59.99560 * 14 13 12 49 49 H 0.97004 * 119.99755 * 179.97438 * 18 17 15 50 50 H 1.09002 * 110.38563 * 95.57009 * 23 11 10 51 51 H 1.08997 * 110.38219 * 217.82609 * 23 11 10 52 52 H 1.08998 * 109.39426 * 287.91041 * 25 24 8 53 53 H 1.09000 * 109.31174 * 168.15427 * 25 24 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0013 6 7 5.6182 2.4666 0.0025 7 6 6.3220 2.4110 -1.2785 8 6 7.7974 2.7155 -1.0740 9 6 8.0211 4.2316 -0.8693 10 6 9.4661 4.4401 -1.3733 11 7 9.7842 3.3124 -2.2693 12 6 10.1852 3.7928 -3.5984 13 6 11.5447 4.4877 -3.5007 14 6 11.9621 4.9887 -4.8848 15 6 13.3009 5.6737 -4.7885 16 1 13.8037 5.7450 -3.8353 17 6 13.8840 6.2094 -5.9172 18 7 15.0522 6.8076 -5.8331 19 14 13.0147 6.0854 -7.5660 20 1 12.1422 7.2719 -7.7560 21 1 14.0233 6.0333 -8.6546 22 1 12.1877 4.8525 -7.5981 23 6 8.5982 2.4317 -2.3593 24 8 8.3218 1.9779 0.0217 25 6 7.7582 2.3570 1.2810 26 6 6.2602 2.4151 1.1757 27 8 5.6056 2.4159 2.1967 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6886 1.8463 0.8901 32 1 1.6886 1.8463 -0.8900 33 1 3.8574 0.6435 -0.8891 34 1 3.8566 0.6438 0.8909 35 1 3.8357 3.1230 0.8913 36 1 3.8365 3.1234 -0.8887 37 1 5.8921 3.1453 -1.9598 38 1 6.2141 1.4142 -1.7060 39 1 7.9387 4.4942 0.1853 40 1 7.3167 4.8093 -1.4678 41 1 10.1556 4.4488 -0.5291 42 1 9.5357 5.3799 -1.9211 43 1 10.2573 2.9482 -4.2836 44 1 9.4420 4.4989 -3.9689 45 1 11.4726 5.3324 -2.8154 46 1 12.2879 3.7817 -3.1301 47 1 12.0341 4.1443 -5.5704 48 1 11.2188 5.6948 -5.2550 49 1 15.4626 7.1842 -6.6273 50 1 8.0053 2.6819 -3.2390 51 1 8.9036 1.3859 -2.3931 52 1 8.1391 3.3371 1.5677 53 1 8.0396 1.6240 2.0371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001274043258.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:24 Heat of formation + Delta-G solvation = -140.925792 kcal Electronic energy + Delta-G solvation = -30220.701953 eV Core-core repulsion = 26091.628694 eV Total energy + Delta-G solvation = -4129.073260 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.28431 -40.25867 -38.96195 -38.14124 -36.98533 -35.86233 -34.16464 -33.50718 -31.86440 -30.89943 -29.18502 -28.65348 -27.61000 -26.39665 -25.73434 -24.45677 -23.16947 -22.43173 -21.94873 -21.30869 -19.60380 -18.90977 -18.78875 -18.08313 -17.40209 -17.18030 -17.07358 -16.84921 -16.63485 -16.19035 -16.03144 -15.89568 -15.58226 -15.15501 -15.04975 -14.82599 -14.80950 -14.54863 -14.28710 -14.04559 -13.85746 -13.57564 -13.36705 -13.21129 -13.10522 -12.95284 -12.75779 -12.65058 -12.50280 -12.39107 -12.11997 -12.08446 -11.91244 -11.84523 -11.76719 -11.46035 -11.41293 -11.33783 -11.18621 -10.73808 -10.65989 -10.45381 -9.91350 -9.18859 -8.26881 -6.31426 1.32867 1.37801 1.40869 1.52899 1.67091 2.38986 2.49093 2.81784 2.91393 3.08557 3.23246 3.44454 3.56912 3.62122 3.86443 4.07243 4.09664 4.12302 4.20324 4.22462 4.25757 4.31623 4.39203 4.40095 4.44467 4.46628 4.49973 4.52964 4.59342 4.62260 4.67410 4.69245 4.74638 4.79840 4.83718 4.94385 4.94847 4.98809 5.00858 5.06911 5.10061 5.18738 5.30519 5.56874 5.64482 5.69748 5.85784 6.08755 6.16935 6.19765 6.22096 6.33540 6.77459 6.88296 7.33151 8.90299 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020406 B = 0.001863 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.791479 B =15029.185357 C =15991.761248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.423 6.423 3 C 0.064 3.936 4 C -0.126 4.126 5 C 0.115 3.885 6 N -0.597 5.597 7 C 0.099 3.901 8 C 0.092 3.908 9 C -0.160 4.160 10 C 0.046 3.954 11 N -0.541 5.541 12 C 0.062 3.938 13 C -0.088 4.088 14 C -0.009 4.009 15 C -0.535 4.535 16 H 0.025 0.975 17 C -0.001 4.001 18 N -0.955 5.955 19 Si 0.956 3.044 20 H -0.265 1.265 21 H -0.286 1.286 22 H -0.241 1.241 23 C 0.063 3.937 24 O -0.357 6.357 25 C 0.049 3.951 26 C 0.486 3.514 27 O -0.580 6.580 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.076 0.924 36 H 0.115 0.885 37 H 0.119 0.881 38 H 0.091 0.909 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.079 0.921 44 H 0.045 0.955 45 H 0.042 0.958 46 H 0.042 0.958 47 H 0.022 0.978 48 H 0.021 0.979 49 H 0.265 0.735 50 H 0.090 0.910 51 H 0.091 0.909 52 H 0.102 0.898 53 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.799 -11.011 9.562 34.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.342 6.342 3 C -0.013 4.013 4 C -0.165 4.165 5 C -0.007 4.007 6 N -0.328 5.328 7 C -0.023 4.023 8 C 0.051 3.949 9 C -0.198 4.198 10 C -0.082 4.082 11 N -0.266 5.266 12 C -0.066 4.066 13 C -0.127 4.127 14 C -0.047 4.047 15 C -0.573 4.573 16 H 0.044 0.956 17 C -0.197 4.197 18 N -0.596 5.596 19 Si 0.779 3.221 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.164 1.164 23 C -0.065 4.065 24 O -0.275 6.275 25 C -0.030 4.030 26 C 0.275 3.725 27 O -0.461 6.461 28 H 0.066 0.934 29 H 0.074 0.926 30 H 0.111 0.889 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.063 0.937 35 H 0.094 0.906 36 H 0.133 0.867 37 H 0.137 0.863 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.118 0.882 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.039 0.961 49 H 0.074 0.926 50 H 0.108 0.892 51 H 0.109 0.891 52 H 0.120 0.880 53 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -31.315 -11.513 10.151 34.874 hybrid contribution -0.325 1.075 -0.557 1.254 sum -31.639 -10.438 9.594 34.671 Atomic orbital electron populations 1.22919 0.79357 1.03760 1.00987 1.87837 1.21636 1.29101 1.95655 1.22474 0.92838 0.84491 1.01450 1.21740 0.94141 0.98006 1.02575 1.21496 0.78106 0.96402 1.04710 1.47548 1.07816 1.71455 1.06003 1.22111 0.90109 1.05086 0.85036 1.22322 0.92414 0.91474 0.88655 1.23405 0.97513 0.95589 1.03289 1.22785 0.95519 0.93187 0.96730 1.63544 1.34388 1.17623 1.11018 1.22260 0.95817 0.98795 0.89743 1.21273 0.95990 0.98404 0.96987 1.19493 0.94182 0.95741 0.95285 1.21545 1.04761 1.36143 0.94807 0.95650 1.26115 0.95498 0.94169 1.03902 1.70094 1.18631 1.39840 1.31015 0.85572 0.78572 0.80305 0.77660 1.19025 1.21232 1.16445 1.22923 0.89926 0.99291 0.94355 1.88092 1.64550 1.60741 1.14149 1.22880 0.87005 1.05051 0.88084 1.21270 0.92255 0.75595 0.83377 1.90725 1.68014 1.51859 1.35477 0.93391 0.92646 0.88858 0.92951 0.90869 0.90552 0.93673 0.90583 0.86684 0.86288 0.89077 0.90042 0.88184 0.91774 0.92521 0.90253 0.93642 0.93903 0.93903 0.95946 0.96057 0.92585 0.89189 0.89061 0.88021 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.93 10.70 -148.98 -1.59 -8.53 16 3 C 0.06 0.77 5.94 71.98 0.43 1.19 16 4 C -0.13 -1.73 5.90 30.59 0.18 -1.55 16 5 C 0.11 1.33 5.28 86.38 0.46 1.79 16 6 N -0.60 -8.58 2.83 -826.22 -2.34 -10.92 16 7 C 0.10 1.02 5.40 86.11 0.46 1.49 16 8 C 0.09 1.41 0.83 -10.20 -0.01 1.40 16 9 C -0.16 -2.49 5.79 31.64 0.18 -2.31 16 10 C 0.05 1.03 6.21 86.68 0.54 1.57 16 11 N -0.54 -13.41 5.17 -886.39 -4.58 -17.99 16 12 C 0.06 1.72 4.53 86.30 0.39 2.11 16 13 C -0.09 -3.40 5.17 30.59 0.16 -3.24 16 14 C -0.01 -0.42 4.04 29.85 0.12 -0.30 16 15 C -0.53 -31.20 9.66 25.60 0.25 -30.96 16 16 H 0.03 1.65 7.99 -2.91 -0.02 1.62 16 17 C 0.00 -0.04 5.47 84.66 0.46 0.42 16 18 N -0.95 -60.58 13.96 21.45 0.30 -60.28 16 19 Si 0.96 43.65 27.47 68.60 1.88 45.53 16 20 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 22 H -0.24 -10.00 6.54 99.48 0.65 -9.34 16 23 C 0.06 1.08 5.87 86.45 0.51 1.59 16 24 O -0.36 -7.04 10.43 -148.98 -1.55 -8.59 16 25 C 0.05 0.85 6.37 71.10 0.45 1.30 16 26 C 0.49 9.68 7.46 87.67 0.65 10.34 16 27 O -0.58 -15.63 16.37 -3.04 -0.05 -15.68 16 28 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.05 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.09 0.71 8.14 -2.38 -0.02 0.69 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.12 7.30 -2.38 -0.02 1.11 16 36 H 0.12 0.57 7.95 -2.39 -0.02 0.55 16 37 H 0.12 0.59 7.72 -2.38 -0.02 0.57 16 38 H 0.09 0.82 8.13 -2.39 -0.02 0.80 16 39 H 0.08 1.25 5.96 -2.39 -0.01 1.24 16 40 H 0.10 1.20 7.81 -2.39 -0.02 1.18 16 41 H 0.06 1.62 8.14 -2.38 -0.02 1.60 16 42 H 0.06 1.37 6.87 -2.39 -0.02 1.35 16 43 H 0.08 2.10 8.08 -2.38 -0.02 2.08 16 44 H 0.05 1.14 7.98 -2.39 -0.02 1.13 16 45 H 0.04 1.69 7.09 -2.38 -0.02 1.67 16 46 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.02 0.99 7.20 -2.38 -0.02 0.98 16 48 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 49 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 50 H 0.09 1.12 7.67 -2.39 -0.02 1.10 16 51 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 52 H 0.10 1.58 6.60 -2.39 -0.02 1.56 16 53 H 0.14 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -77.60 412.42 -0.64 -78.24 By element: Atomic # 1 Polarization: 11.07 SS G_CDS: 0.81 Total: 11.88 kcal Atomic # 6 Polarization: -20.15 SS G_CDS: 6.48 Total: -13.66 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -6.62 Total: -89.19 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: -3.20 Total: -32.80 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 1.88 Total: 45.53 kcal Total: -77.60 -0.64 -78.24 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001274043258.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.688 kcal (2) G-P(sol) polarization free energy of solvation -77.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds