Wall clock time and date at job start Sat Apr 11 2020 06:11:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99746 * 2 1 4 4 C 1.52999 * 109.47155 * 270.00106 * 3 2 1 5 5 C 1.53006 * 109.46717 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.47336 * 60.00377 * 5 4 3 7 7 C 1.53000 * 109.47451 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47246 * 184.99999 * 7 6 5 9 9 O 1.21281 * 120.00058 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99647 * 180.02562 * 8 7 6 11 11 C 1.46501 * 119.99644 * 175.07362 * 10 8 7 12 12 C 1.52995 * 112.94788 * 303.26072 * 11 10 8 13 13 C 1.52996 * 109.47394 * 304.10275 * 12 11 10 14 14 O 1.42895 * 109.47646 * 175.18293 * 13 12 11 15 15 C 1.53949 * 113.74175 * 171.66784 * 11 10 8 16 16 N 1.47814 * 86.03742 * 222.08461 * 15 11 10 17 17 C 1.36936 * 134.45585 * 204.64231 * 16 15 11 18 18 H 1.08004 * 119.99793 * 179.87348 * 17 16 15 19 19 C 1.38806 * 120.00202 * 359.86859 * 17 16 15 20 20 N 1.31625 * 119.99897 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00114 * 180.02562 * 19 17 16 22 22 H 1.48491 * 109.47199 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47373 * 120.00377 * 21 19 17 24 24 H 1.48502 * 109.46899 * 239.99812 * 21 19 17 25 25 C 1.47585 * 91.05013 * 24.55223 * 16 15 11 26 26 C 1.52999 * 109.46910 * 299.99505 * 6 5 4 27 27 C 1.53002 * 109.47284 * 149.99685 * 3 2 1 28 28 H 1.09000 * 109.47260 * 299.99452 * 1 2 3 29 29 H 1.09003 * 109.47390 * 60.00640 * 1 2 3 30 30 H 1.09004 * 109.46725 * 179.97438 * 1 2 3 31 31 H 1.09007 * 109.47204 * 30.00249 * 3 2 1 32 32 H 1.09001 * 109.47385 * 59.99940 * 4 3 2 33 33 H 1.09000 * 109.47161 * 299.99471 * 4 3 2 34 34 H 1.08997 * 109.47773 * 299.99588 * 5 4 3 35 35 H 1.09004 * 109.46501 * 179.97438 * 5 4 3 36 36 H 1.08998 * 109.47092 * 59.99437 * 6 5 4 37 37 H 1.09004 * 109.46712 * 304.99853 * 7 6 5 38 38 H 1.09000 * 109.46910 * 64.99222 * 7 6 5 39 39 H 0.96995 * 120.00772 * 355.07346 * 10 8 7 40 40 H 1.09006 * 109.47290 * 64.10213 * 12 11 10 41 41 H 1.08995 * 109.47412 * 184.10212 * 12 11 10 42 42 H 1.09004 * 109.47304 * 295.18679 * 13 12 11 43 43 H 1.09000 * 109.46934 * 55.17959 * 13 12 11 44 44 H 0.96703 * 114.00297 * 179.97438 * 14 13 12 45 45 H 1.08997 * 113.77072 * 336.35156 * 15 11 10 46 46 H 1.09002 * 113.76861 * 107.74887 * 15 11 10 47 47 H 0.97003 * 119.99936 * 179.97438 * 20 19 17 48 48 H 1.09002 * 113.76323 * 221.15143 * 25 16 15 49 49 H 1.08996 * 113.87718 * 89.76628 * 25 16 15 50 50 H 1.09001 * 109.47385 * 179.97438 * 26 6 5 51 51 H 1.09000 * 109.47161 * 300.00410 * 26 6 5 52 52 H 1.08998 * 109.46658 * 60.00237 * 27 3 2 53 53 H 1.09000 * 109.47477 * 300.00535 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 2.2175 1.7714 -1.4425 5 6 2.8392 3.1695 -1.4424 6 6 4.1878 3.1279 -0.7210 7 6 4.8098 4.5258 -0.7214 8 6 6.1904 4.4615 -0.1209 9 8 6.6332 3.4021 0.2696 10 7 6.9327 5.5816 -0.0167 11 6 8.2294 5.5403 0.6640 12 6 8.1325 5.0244 2.1011 13 6 7.1324 5.8782 2.8832 14 8 6.9575 5.3293 4.1908 15 6 9.0438 6.8393 0.5254 16 7 10.2138 5.9618 0.3109 17 6 11.5646 6.1051 0.4838 18 1 12.2290 5.2869 0.2480 19 6 12.0800 7.3019 0.9621 20 7 11.2703 8.2992 1.2490 21 14 13.9228 7.4977 1.1973 22 1 14.6082 6.2402 0.8050 23 1 14.4140 8.6146 0.3510 24 1 14.2110 7.7937 2.6237 25 6 9.3418 4.8690 -0.1619 26 6 3.9804 2.6620 0.7215 27 6 3.3588 1.2634 0.7213 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.3448 1.9994 0.5139 32 1 1.2567 1.8015 -1.9564 33 1 2.8829 1.0776 -1.9563 34 1 2.1736 3.8632 -0.9287 35 1 2.9874 3.5012 -2.4701 36 1 4.8534 2.4343 -1.2347 37 1 4.8757 4.8938 -1.7454 38 1 4.1882 5.2002 -0.1324 39 1 6.6086 6.4150 -0.3923 40 1 7.7967 3.9874 2.0931 41 1 9.1117 5.0855 2.5759 42 1 7.5102 6.8974 2.9645 43 1 6.1754 5.8861 2.3615 44 1 6.3354 5.8213 4.7440 45 1 8.7756 7.4350 -0.3472 46 1 9.0953 7.4256 1.4428 47 1 11.6305 9.1355 1.5836 48 1 9.6307 3.8852 0.2079 49 1 9.1603 4.8830 -1.2366 50 1 4.9412 2.6319 1.2353 51 1 3.3147 3.3556 1.2352 52 1 4.0241 0.5695 0.2075 53 1 3.2111 0.9314 1.7490 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276106923.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:49 Heat of formation + Delta-G solvation = -124.384824 kcal Electronic energy + Delta-G solvation = -31203.536935 eV Core-core repulsion = 27075.180945 eV Total energy + Delta-G solvation = -4128.355989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.53799 -40.33551 -39.25347 -37.69757 -37.39941 -35.19147 -33.82270 -32.82629 -31.74960 -31.64981 -29.12014 -28.19018 -26.83422 -26.77841 -24.96659 -23.60485 -23.38339 -22.60866 -21.19551 -20.67903 -20.11762 -18.78208 -18.39128 -17.93204 -17.54562 -17.09277 -16.75244 -16.62131 -16.21040 -16.00030 -15.93455 -15.60212 -15.33198 -15.13826 -14.81014 -14.73097 -14.44449 -14.25183 -13.71481 -13.66477 -13.35809 -13.32715 -13.18388 -12.99957 -12.86534 -12.76374 -12.65456 -12.58052 -12.31241 -12.22713 -12.02497 -11.98824 -11.83653 -11.73795 -11.54452 -11.42423 -11.25115 -11.20628 -10.97126 -10.85848 -10.43639 -10.25009 -9.90981 -8.96479 -7.94482 -5.27102 1.44680 1.45732 1.55756 1.84905 2.23927 2.50499 2.86330 3.16737 3.26020 3.39555 3.66049 3.77058 3.78633 3.91915 4.01157 4.14328 4.20383 4.27333 4.30277 4.35558 4.46562 4.49865 4.51940 4.55799 4.59487 4.60874 4.64495 4.72270 4.73531 4.76275 4.84152 4.86800 4.88859 4.99273 5.06741 5.11696 5.14957 5.18005 5.20843 5.22924 5.24517 5.28135 5.35865 5.47548 5.55892 5.62641 5.79937 5.89703 6.35347 6.78551 6.89927 6.91713 7.49966 7.55705 8.49438 9.22593 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.023630 B = 0.002283 C = 0.002207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1184.660475 B =12264.025039 C =12684.442621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.090 3.910 4 C -0.137 4.137 5 C -0.103 4.103 6 C -0.070 4.070 7 C -0.128 4.128 8 C 0.506 3.494 9 O -0.569 6.569 10 N -0.710 5.710 11 C 0.159 3.841 12 C -0.089 4.089 13 C 0.094 3.906 14 O -0.592 6.592 15 C 0.171 3.829 16 N -0.634 5.634 17 C -0.235 4.235 18 H 0.078 0.922 19 C -0.060 4.060 20 N -0.947 5.947 21 Si 0.977 3.023 22 H -0.270 1.270 23 H -0.288 1.288 24 H -0.291 1.291 25 C 0.121 3.879 26 C -0.111 4.111 27 C -0.113 4.113 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.091 0.909 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.054 0.946 37 H 0.117 0.883 38 H 0.120 0.880 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.045 0.955 42 H 0.043 0.957 43 H 0.063 0.937 44 H 0.396 0.604 45 H 0.036 0.964 46 H 0.056 0.944 47 H 0.251 0.749 48 H 0.035 0.965 49 H 0.044 0.956 50 H 0.059 0.941 51 H 0.072 0.928 52 H 0.049 0.951 53 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.305 -6.221 -3.864 27.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C 0.033 3.967 4 C -0.174 4.174 5 C -0.141 4.141 6 C -0.089 4.089 7 C -0.167 4.167 8 C 0.295 3.705 9 O -0.447 6.447 10 N -0.363 5.363 11 C 0.071 3.929 12 C -0.128 4.128 13 C 0.017 3.983 14 O -0.401 6.401 15 C 0.045 3.955 16 N -0.360 5.360 17 C -0.363 4.363 18 H 0.095 0.905 19 C -0.253 4.253 20 N -0.595 5.595 21 Si 0.805 3.195 22 H -0.195 1.195 23 H -0.215 1.215 24 H -0.218 1.218 25 C -0.005 4.005 26 C -0.148 4.148 27 C -0.150 4.150 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.251 0.749 40 H 0.086 0.914 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.081 0.919 44 H 0.245 0.755 45 H 0.053 0.947 46 H 0.074 0.926 47 H 0.060 0.940 48 H 0.053 0.947 49 H 0.062 0.938 50 H 0.078 0.922 51 H 0.091 0.909 52 H 0.067 0.933 53 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -25.172 -7.419 -3.726 26.506 hybrid contribution 0.950 1.025 0.140 1.404 sum -24.222 -6.394 -3.586 25.307 Atomic orbital electron populations 1.22942 0.79839 1.03531 1.00792 1.87890 1.21244 1.29128 1.95259 1.22239 0.94360 0.84000 0.96111 1.21982 1.01538 0.97543 0.96382 1.21518 0.94952 0.96177 1.01418 1.20893 0.96778 0.95066 0.96184 1.21803 0.91038 0.99838 1.04062 1.21448 0.88169 0.82955 0.77943 1.90666 1.73648 1.30379 1.50046 1.46040 1.19191 1.12856 1.58220 1.22078 0.81711 0.97723 0.91347 1.21170 0.98997 1.00152 0.92477 1.21933 0.98016 0.95447 0.82939 1.86445 1.69107 1.57971 1.26546 1.22472 0.82901 0.91101 0.98981 1.46016 1.01643 1.12984 1.75406 1.19331 0.81613 0.98502 1.36875 0.90461 1.25546 1.02183 0.95720 1.01879 1.69945 1.34450 1.04184 1.50954 0.85033 0.79765 0.77635 0.77024 1.19505 1.21492 1.21751 1.22950 0.88909 0.92302 0.96385 1.21603 1.00846 0.95307 0.97090 1.21536 0.95487 0.97955 1.00068 0.93259 0.93008 0.89021 0.90869 0.90598 0.92722 0.89878 0.90073 0.92722 0.86446 0.86152 0.74871 0.91372 0.93613 0.93863 0.91853 0.75462 0.94651 0.92551 0.93985 0.94657 0.93845 0.92238 0.90904 0.93251 0.92216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.82 113.37 1.23 1.53 16 2 O -0.42 -8.28 10.35 -148.98 -1.54 -9.82 16 3 C 0.09 1.54 2.61 30.59 0.08 1.62 16 4 C -0.14 -1.99 5.54 30.60 0.17 -1.83 16 5 C -0.10 -1.22 5.20 30.60 0.16 -1.06 16 6 C -0.07 -1.23 1.84 -10.79 -0.02 -1.25 16 7 C -0.13 -1.95 5.18 29.85 0.15 -1.80 16 8 C 0.51 13.07 7.11 87.66 0.62 13.70 16 9 O -0.57 -19.75 12.15 -3.03 -0.04 -19.79 16 10 N -0.71 -18.88 4.52 -427.54 -1.93 -20.82 16 11 C 0.16 5.93 0.68 5.36 0.00 5.94 16 12 C -0.09 -3.50 4.67 30.59 0.14 -3.36 16 13 C 0.09 2.96 6.86 71.98 0.49 3.46 16 14 O -0.59 -18.20 13.66 -148.98 -2.03 -20.24 16 15 C 0.17 7.68 6.69 86.44 0.58 8.26 16 16 N -0.63 -33.03 3.55 -715.41 -2.54 -35.57 16 17 C -0.23 -13.47 10.70 84.03 0.90 -12.57 16 18 H 0.08 4.35 7.83 -2.91 -0.02 4.33 16 19 C -0.06 -3.40 5.50 84.86 0.47 -2.94 16 20 N -0.95 -55.62 11.39 21.65 0.25 -55.37 16 21 Si 0.98 46.09 29.55 68.60 2.03 48.11 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 23 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 C 0.12 5.33 8.04 86.49 0.70 6.03 16 26 C -0.11 -2.26 4.95 30.61 0.15 -2.11 16 27 C -0.11 -2.38 5.58 30.61 0.17 -2.21 16 28 H 0.05 0.50 8.08 -2.39 -0.02 0.48 16 29 H 0.05 0.50 7.87 -2.39 -0.02 0.48 16 30 H 0.09 0.93 8.14 -2.38 -0.02 0.91 16 31 H 0.07 1.02 7.79 -2.38 -0.02 1.00 16 32 H 0.08 0.89 7.87 -2.39 -0.02 0.87 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 35 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 36 H 0.05 1.26 7.95 -2.39 -0.02 1.24 16 37 H 0.12 1.26 8.14 -2.39 -0.02 1.25 16 38 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.41 8.28 8.67 -92.71 -0.80 7.47 16 40 H 0.07 2.84 6.54 -2.38 -0.02 2.82 16 41 H 0.05 2.15 8.02 -2.39 -0.02 2.13 16 42 H 0.04 1.40 7.61 -2.39 -0.02 1.39 16 43 H 0.06 1.64 7.43 -2.39 -0.02 1.62 16 44 H 0.40 7.51 9.12 -74.06 -0.68 6.84 16 45 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 46 H 0.06 2.82 6.59 -2.39 -0.02 2.80 16 47 H 0.25 14.25 8.31 -92.71 -0.77 13.48 16 48 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 49 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.06 1.65 5.95 -2.39 -0.01 1.64 16 51 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 52 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 53 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.88 411.74 -0.40 -76.28 By element: Atomic # 1 Polarization: 26.38 SS G_CDS: -0.58 Total: 25.80 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: 6.00 Total: 11.42 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -4.22 Total: -111.76 kcal Atomic # 8 Polarization: -46.24 SS G_CDS: -3.61 Total: -49.85 kcal Atomic # 14 Polarization: 46.09 SS G_CDS: 2.03 Total: 48.11 kcal Total: -75.88 -0.40 -76.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276106923.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.109 kcal (2) G-P(sol) polarization free energy of solvation -75.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds