Wall clock time and date at job start Sat Apr 11 2020 06:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36936 * 119.99759 * 2 1 4 4 H 1.07995 * 120.00106 * 163.24382 * 3 2 1 5 5 C 1.38816 * 120.00137 * 343.51730 * 3 2 1 6 6 N 1.31612 * 120.00003 * 343.44914 * 5 3 2 7 7 Si 1.86800 * 119.99932 * 163.44523 * 5 3 2 8 8 H 1.48495 * 109.47055 * 60.00160 * 7 5 3 9 9 H 1.48503 * 109.47023 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47422 * 300.00248 * 7 5 3 11 11 C 1.46494 * 119.99981 * 179.97438 * 2 1 3 12 12 C 1.53042 * 109.45653 * 60.03045 * 11 2 1 13 13 C 1.53197 * 109.31300 * 178.59815 * 12 11 2 14 14 N 1.46924 * 108.76568 * 54.65526 * 13 12 11 15 15 C 1.34769 * 120.63276 * 126.36024 * 14 13 12 16 16 O 1.21280 * 120.00252 * 180.02562 * 15 14 13 17 17 C 1.50702 * 120.00223 * 0.02562 * 15 14 13 18 18 C 1.52993 * 109.47463 * 179.97438 * 17 15 14 19 19 O 1.42905 * 109.47207 * 180.02562 * 18 17 15 20 20 C 1.42895 * 113.99744 * 179.97438 * 19 18 17 21 21 C 1.53002 * 109.47027 * 179.97438 * 20 19 18 22 22 H 1.08996 * 109.82466 * 305.56671 * 21 20 19 23 23 C 1.54383 * 109.83504 * 184.58667 * 21 20 19 24 24 C 1.55305 * 102.25341 * 219.13100 * 23 21 20 25 25 C 1.54947 * 100.94338 * 34.13311 * 24 23 21 26 26 O 1.43239 * 109.82972 * 66.45052 * 21 20 19 27 27 C 1.46924 * 118.73654 * 306.38495 * 14 13 12 28 28 C 1.53037 * 109.46380 * 299.97466 * 11 2 1 29 29 H 1.08997 * 109.47065 * 84.83294 * 1 2 3 30 30 H 1.08995 * 109.47135 * 204.83713 * 1 2 3 31 31 H 1.08998 * 109.47215 * 324.83360 * 1 2 3 32 32 H 0.97003 * 120.00408 * 180.02562 * 6 5 3 33 33 H 1.08999 * 109.45913 * 179.97438 * 11 2 1 34 34 H 1.08997 * 109.50010 * 298.56319 * 12 11 2 35 35 H 1.09005 * 109.49888 * 58.66237 * 12 11 2 36 36 H 1.08998 * 109.59410 * 294.86673 * 13 12 11 37 37 H 1.08999 * 109.70080 * 174.50341 * 13 12 11 38 38 H 1.08994 * 109.47180 * 300.00194 * 17 15 14 39 39 H 1.09008 * 109.46556 * 59.99632 * 17 15 14 40 40 H 1.09007 * 109.47351 * 299.99962 * 18 17 15 41 41 H 1.09002 * 109.47464 * 59.99841 * 18 17 15 42 42 H 1.09004 * 109.47715 * 299.99638 * 20 19 18 43 43 H 1.08998 * 109.47497 * 60.00052 * 20 19 18 44 44 H 1.09002 * 110.84353 * 337.32591 * 23 21 20 45 45 H 1.08997 * 110.84420 * 100.93575 * 23 21 20 46 46 H 1.08992 * 111.12353 * 276.21145 * 24 23 21 47 47 H 1.08997 * 111.15883 * 152.06704 * 24 23 21 48 48 H 1.08994 * 110.31091 * 204.64075 * 25 24 23 49 49 H 1.09002 * 110.39077 * 82.50977 * 25 24 23 50 50 H 1.09000 * 109.58767 * 293.82077 * 27 14 13 51 51 H 1.09001 * 109.70349 * 173.46601 * 27 14 13 52 52 H 1.08997 * 109.49696 * 301.33359 * 28 11 2 53 53 H 1.09003 * 109.49901 * 61.40376 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1953 1.2058 0.2696 5 6 1.4984 2.3634 -0.3411 6 7 0.3427 2.3180 -0.9691 7 14 2.2622 4.0123 0.0914 8 1 3.5877 4.1318 -0.5673 9 1 1.3752 5.1070 -0.3778 10 1 2.4306 4.1090 1.5636 11 6 2.1975 -1.2687 0.0006 12 6 1.8281 -2.0711 -1.2491 13 6 2.6220 -3.3813 -1.2630 14 7 2.3850 -4.0910 0.0014 15 6 1.9580 -5.3692 0.0018 16 8 1.7655 -5.9440 1.0522 17 6 1.7196 -6.0845 -1.3031 18 6 1.2435 -7.5113 -1.0231 19 8 1.0181 -8.1896 -2.2605 20 6 0.5689 -9.5379 -2.1107 21 6 0.3607 -10.1625 -3.4918 22 1 -0.3107 -9.5390 -4.0821 23 6 -0.2337 -11.5794 -3.3417 24 6 0.5165 -12.3705 -4.4477 25 6 1.9011 -11.6755 -4.4187 26 8 1.6201 -10.2903 -4.1621 27 6 2.6218 -3.3805 1.2654 28 6 1.8282 -2.0702 1.2508 29 1 -0.3633 0.0925 -1.0235 30 1 -0.3633 -0.9326 0.4316 31 1 -0.3633 0.8401 0.5919 32 1 -0.1123 3.1408 -1.2078 33 1 3.2691 -1.0693 0.0000 34 1 0.7609 -2.2924 -1.2372 35 1 2.0698 -1.4901 -2.1392 36 1 3.6850 -3.1634 -1.3661 37 1 2.2935 -4.0012 -2.0972 38 1 0.9591 -5.5530 -1.8751 39 1 2.6474 -6.1169 -1.8744 40 1 2.0044 -8.0426 -0.4513 41 1 0.3159 -7.4793 -0.4516 42 1 1.3159 -10.1109 -1.5613 43 1 -0.3728 -9.5483 -1.5620 44 1 -0.0153 -11.9892 -2.3556 45 1 -1.3072 -11.5716 -3.5306 46 1 0.0339 -12.2444 -5.4168 47 1 0.6011 -13.4257 -4.1881 48 1 2.4013 -11.7883 -5.3805 49 1 2.5176 -12.0905 -3.6213 50 1 3.6848 -3.1626 1.3685 51 1 2.2926 -3.9978 2.1013 52 1 2.0698 -1.4885 2.1404 53 1 0.7608 -2.2910 1.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277412332.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:00 Heat of formation + Delta-G solvation = -126.772878 kcal Electronic energy + Delta-G solvation = -29907.205873 eV Core-core repulsion = 25778.746330 eV Total energy + Delta-G solvation = -4128.459543 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.31401 -40.52481 -39.15175 -38.45312 -36.71462 -34.07753 -33.38116 -33.03356 -31.94992 -31.48903 -30.79905 -28.04485 -26.80709 -26.21035 -24.91166 -23.99695 -23.31878 -22.61154 -22.08875 -21.07674 -19.71520 -18.75260 -18.52227 -18.09686 -17.31376 -17.12446 -17.05251 -16.92178 -16.47532 -16.12332 -15.82393 -15.72207 -15.15792 -15.05760 -14.88498 -14.60859 -14.52642 -14.33364 -14.00388 -13.86505 -13.61472 -13.41578 -13.16782 -13.09437 -12.79118 -12.66083 -12.59528 -12.44028 -12.35269 -12.28580 -12.21359 -12.15002 -12.06880 -12.03277 -11.78379 -11.70388 -11.61473 -11.25547 -10.86994 -10.64069 -10.57192 -10.47255 -9.68017 -8.81815 -7.80377 -5.21698 1.47611 1.50586 1.55207 1.56644 1.86477 2.52807 2.62340 2.95130 3.32546 3.55343 3.56774 3.64545 3.78763 3.89551 3.96072 4.02013 4.09499 4.14632 4.17822 4.19895 4.26726 4.34050 4.39998 4.40187 4.46768 4.50014 4.58307 4.63577 4.71970 4.77440 4.81278 4.82072 4.83634 4.85097 4.91080 4.91671 4.95717 5.01753 5.04925 5.10588 5.25962 5.27305 5.39821 5.50193 5.59584 5.67060 5.73739 6.04687 6.23003 6.32639 6.39206 7.09143 7.17085 7.91569 8.34119 9.23586 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.024714 B = 0.001728 C = 0.001679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.702847 B =16203.001216 C =16672.250029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.185 3.815 2 N -0.613 5.613 3 C -0.258 4.258 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.940 5.940 7 Si 0.966 3.034 8 H -0.274 1.274 9 H -0.298 1.298 10 H -0.282 1.282 11 C 0.173 3.827 12 C -0.137 4.137 13 C 0.115 3.885 14 N -0.605 5.605 15 C 0.519 3.481 16 O -0.586 6.586 17 C -0.132 4.132 18 C 0.083 3.917 19 O -0.398 6.398 20 C 0.049 3.951 21 C 0.077 3.923 22 H 0.082 0.918 23 C -0.144 4.144 24 C -0.149 4.149 25 C 0.036 3.964 26 O -0.401 6.401 27 C 0.122 3.878 28 C -0.133 4.133 29 H 0.000 1.000 30 H 0.021 0.979 31 H 0.015 0.985 32 H 0.246 0.754 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.064 0.936 36 H 0.089 0.911 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.120 0.880 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.054 0.946 43 H 0.074 0.926 44 H 0.088 0.912 45 H 0.102 0.898 46 H 0.083 0.917 47 H 0.103 0.897 48 H 0.091 0.909 49 H 0.063 0.937 50 H 0.083 0.917 51 H 0.081 0.919 52 H 0.067 0.933 53 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.810 -29.988 -5.309 30.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.335 5.335 3 C -0.388 4.388 4 H 0.093 0.907 5 C -0.252 4.252 6 N -0.588 5.588 7 Si 0.794 3.206 8 H -0.200 1.200 9 H -0.224 1.224 10 H -0.208 1.208 11 C 0.066 3.934 12 C -0.177 4.177 13 C -0.007 4.007 14 N -0.338 5.338 15 C 0.309 3.691 16 O -0.467 6.467 17 C -0.172 4.172 18 C 0.006 3.994 19 O -0.317 6.317 20 C -0.028 4.028 21 C 0.019 3.981 22 H 0.100 0.900 23 C -0.182 4.182 24 C -0.187 4.187 25 C -0.040 4.040 26 O -0.321 6.321 27 C -0.001 4.001 28 C -0.173 4.173 29 H 0.018 0.982 30 H 0.039 0.961 31 H 0.033 0.967 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.132 0.868 39 H 0.138 0.862 40 H 0.069 0.931 41 H 0.069 0.931 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.107 0.893 45 H 0.120 0.880 46 H 0.102 0.898 47 H 0.122 0.878 48 H 0.110 0.890 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.100 0.900 52 H 0.086 0.914 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.783 -29.870 -5.046 30.346 hybrid contribution -0.190 1.328 0.522 1.440 sum 1.594 -28.542 -4.524 28.942 Atomic orbital electron populations 1.20399 0.83178 0.95223 0.97204 1.44230 1.01867 1.01459 1.85919 1.19589 0.95395 0.85601 1.38224 0.90657 1.25627 0.98380 1.01268 0.99936 1.70268 1.18654 1.26510 1.43372 0.85356 0.77551 0.79710 0.77948 1.20000 1.22434 1.20845 1.20514 0.95522 0.84606 0.92758 1.22323 0.99817 0.95963 0.99623 1.21928 1.01070 0.92630 0.85112 1.48220 1.65409 1.11767 1.08356 1.20772 0.75502 0.81518 0.91300 1.90659 1.53976 1.66933 1.35146 1.21466 1.05770 0.94930 0.95002 1.22025 1.00004 0.91756 0.85565 1.87841 1.88024 1.26116 1.29746 1.23112 0.99464 0.82460 0.97735 1.22898 0.85767 0.97653 0.91769 0.89965 1.23135 1.02093 0.92059 1.00869 1.23268 0.94575 1.01163 0.99672 1.23625 0.97807 0.80886 1.01717 1.88517 1.38511 1.26564 1.78500 1.21533 1.00294 0.92017 0.86268 1.22280 0.99663 0.95645 0.99714 0.98171 0.96055 0.96660 0.94487 0.91722 0.93366 0.91774 0.89296 0.87290 0.86846 0.86189 0.93111 0.93091 0.92821 0.90764 0.89310 0.87991 0.89845 0.87814 0.89046 0.91887 0.89838 0.90032 0.91447 0.93472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.27 8.04 127.77 1.03 10.30 16 2 N -0.61 -29.94 2.82 -702.65 -1.98 -31.92 16 3 C -0.26 -13.91 9.66 84.03 0.81 -13.10 16 4 H 0.08 3.89 7.78 -2.91 -0.02 3.86 16 5 C -0.06 -3.22 5.05 84.86 0.43 -2.79 16 6 N -0.94 -55.78 10.54 21.65 0.23 -55.56 16 7 Si 0.97 45.02 29.58 68.60 2.03 47.05 16 8 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 9 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 10 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 11 C 0.17 6.51 2.55 45.02 0.11 6.63 16 12 C -0.14 -4.43 5.34 30.67 0.16 -4.26 16 13 C 0.12 2.66 6.34 86.36 0.55 3.21 16 14 N -0.61 -15.83 2.97 -818.91 -2.43 -18.26 16 15 C 0.52 13.99 7.70 87.66 0.67 14.66 16 16 O -0.59 -19.64 15.40 -3.03 -0.05 -19.69 16 17 C -0.13 -2.75 4.42 29.85 0.13 -2.62 16 18 C 0.08 1.84 5.23 71.98 0.38 2.22 16 19 O -0.40 -9.04 10.33 -146.52 -1.51 -10.55 16 20 C 0.05 0.84 5.47 71.98 0.39 1.23 16 21 C 0.08 1.20 3.81 31.06 0.12 1.32 16 22 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 23 C -0.14 -1.22 6.54 31.86 0.21 -1.01 16 24 C -0.15 -1.10 7.16 32.05 0.23 -0.87 16 25 C 0.04 0.44 7.78 72.65 0.57 1.00 16 26 O -0.40 -8.09 11.00 -146.52 -1.61 -9.70 16 27 C 0.12 3.38 6.43 86.36 0.56 3.94 16 28 C -0.13 -4.43 5.32 30.67 0.16 -4.27 16 29 H 0.00 0.00 7.50 -2.39 -0.02 -0.02 16 30 H 0.02 0.94 6.47 -2.39 -0.02 0.92 16 31 H 0.01 0.82 6.99 -2.39 -0.02 0.80 16 32 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 33 H 0.06 2.41 7.82 -2.39 -0.02 2.39 16 34 H 0.05 1.67 7.72 -2.39 -0.02 1.65 16 35 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 36 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.11 1.97 5.93 -2.39 -0.01 1.95 16 38 H 0.11 2.16 7.69 -2.39 -0.02 2.15 16 39 H 0.12 2.09 7.94 -2.38 -0.02 2.07 16 40 H 0.05 1.16 8.10 -2.38 -0.02 1.14 16 41 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 42 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.09 0.60 7.85 -2.39 -0.02 0.58 16 45 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 47 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 48 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 49 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 50 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 51 H 0.08 2.39 7.01 -2.39 -0.02 2.37 16 52 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 53 H 0.05 1.70 6.72 -2.39 -0.02 1.68 16 Total: -1.00 -71.34 410.43 2.05 -69.29 By element: Atomic # 1 Polarization: 12.88 SS G_CDS: 0.87 Total: 13.74 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: 6.51 Total: 15.59 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -4.19 Total: -105.74 kcal Atomic # 8 Polarization: -36.76 SS G_CDS: -3.17 Total: -39.94 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -71.34 2.05 -69.29 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277412332.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.479 kcal (2) G-P(sol) polarization free energy of solvation -71.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds