Wall clock time and date at job start Sat Apr 11 2020 06:12:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36934 * 120.00475 * 2 1 4 4 H 1.07998 * 120.00759 * 202.99485 * 3 2 1 5 5 C 1.38820 * 119.99564 * 22.99535 * 3 2 1 6 6 N 1.31620 * 119.99822 * 11.64554 * 5 3 2 7 7 Si 1.86797 * 120.00230 * 191.64915 * 5 3 2 8 8 H 1.48500 * 109.46982 * 359.97438 * 7 5 3 9 9 H 1.48501 * 109.46984 * 119.99828 * 7 5 3 10 10 H 1.48500 * 109.47068 * 240.00103 * 7 5 3 11 11 C 1.46504 * 120.00259 * 180.02562 * 2 1 3 12 12 C 1.53037 * 109.46078 * 300.00076 * 11 2 1 13 13 C 1.53197 * 109.31508 * 181.37107 * 12 11 2 14 14 N 1.46922 * 108.77272 * 305.36326 * 13 12 11 15 15 C 1.34783 * 120.63040 * 233.58558 * 14 13 12 16 16 O 1.21284 * 119.99600 * 0.02562 * 15 14 13 17 17 C 1.50696 * 120.00156 * 180.02562 * 15 14 13 18 18 C 1.53001 * 109.47097 * 180.02562 * 17 15 14 19 19 O 1.42897 * 109.46749 * 180.02562 * 18 17 15 20 20 C 1.42901 * 113.99691 * 180.02562 * 19 18 17 21 21 C 1.53007 * 109.47266 * 179.97438 * 20 19 18 22 22 H 1.09003 * 110.33018 * 52.74643 * 21 20 19 23 23 C 1.54476 * 110.37217 * 174.99737 * 21 20 19 24 24 C 1.54509 * 104.06137 * 142.80993 * 23 21 20 25 25 C 1.54472 * 104.06385 * 359.97438 * 24 23 21 26 26 O 1.44429 * 104.90316 * 335.96486 * 25 24 23 27 27 C 1.46919 * 118.74009 * 53.85967 * 14 13 12 28 28 C 1.53044 * 109.44729 * 60.05953 * 11 2 1 29 29 H 1.09004 * 109.46732 * 273.83862 * 1 2 3 30 30 H 1.08998 * 109.47235 * 33.84105 * 1 2 3 31 31 H 1.09003 * 109.46964 * 153.84390 * 1 2 3 32 32 H 0.97003 * 120.00080 * 180.02562 * 6 5 3 33 33 H 1.09000 * 109.46314 * 180.02562 * 11 2 1 34 34 H 1.09000 * 109.50297 * 61.41463 * 12 11 2 35 35 H 1.09001 * 109.52363 * 301.33515 * 12 11 2 36 36 H 1.09002 * 109.58429 * 185.57713 * 13 12 11 37 37 H 1.09000 * 109.70172 * 65.22035 * 13 12 11 38 38 H 1.09001 * 109.47013 * 59.99526 * 17 15 14 39 39 H 1.09005 * 109.46829 * 299.99987 * 17 15 14 40 40 H 1.09000 * 109.47100 * 59.99718 * 18 17 15 41 41 H 1.09003 * 109.46747 * 299.99851 * 18 17 15 42 42 H 1.08999 * 109.47547 * 59.99677 * 20 19 18 43 43 H 1.09002 * 109.46880 * 299.99329 * 20 19 18 44 44 H 1.09000 * 110.51239 * 24.16012 * 23 21 20 45 45 H 1.09002 * 110.50929 * 261.44985 * 23 21 20 46 46 H 1.09001 * 110.51008 * 241.35021 * 24 23 21 47 47 H 1.09001 * 110.62631 * 118.70265 * 24 23 21 48 48 H 1.09002 * 110.37786 * 94.85414 * 25 24 23 49 49 H 1.09002 * 110.37339 * 217.08238 * 25 24 23 50 50 H 1.09005 * 109.59115 * 65.92608 * 27 14 13 51 51 H 1.09003 * 109.58656 * 186.35185 * 27 14 13 52 52 H 1.09001 * 109.49953 * 298.57214 * 28 11 2 53 53 H 1.09001 * 109.49832 * 58.64017 * 28 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1654 1.2230 -0.3653 5 6 1.5384 2.3403 0.4697 6 7 0.3980 2.2622 1.1222 7 14 2.3341 4.0045 0.1756 8 1 3.6017 3.8212 -0.5761 9 1 1.4114 4.8623 -0.6106 10 1 2.6222 4.6529 1.4801 11 6 2.1976 -1.2687 -0.0006 12 6 1.8277 -2.0716 1.2487 13 6 2.6211 -3.3820 1.2621 14 7 2.3845 -4.0910 -0.0027 15 6 1.9581 -5.3696 -0.0039 16 8 1.7656 -5.9456 1.0459 17 6 1.7204 -6.0835 -1.3096 18 6 1.2437 -7.5105 -1.0313 19 8 1.0190 -8.1875 -2.2695 20 6 0.5682 -9.5354 -2.1214 21 6 0.3609 -10.1587 -3.5033 22 1 1.2586 -10.0410 -4.1103 23 6 -0.0057 -11.6533 -3.3695 24 6 -1.0407 -11.8879 -4.4925 25 6 -1.1774 -10.5071 -5.1714 26 8 -0.7781 -9.5553 -4.1611 27 6 2.6274 -3.3818 -1.2663 28 6 1.8286 -2.0696 -1.2515 29 1 -0.3633 0.0688 1.0254 30 1 -0.3633 0.8535 -0.5723 31 1 -0.3633 -0.9225 -0.4530 32 1 -0.0294 3.0689 1.4501 33 1 3.2692 -1.0693 0.0000 34 1 0.7604 -2.2926 1.2365 35 1 2.0688 -1.4912 2.1393 36 1 2.2897 -4.0013 2.0957 37 1 3.6845 -3.1667 1.3670 38 1 2.6483 -6.1148 -1.8807 39 1 0.9598 -5.5516 -1.8813 40 1 0.3157 -7.4787 -0.4604 41 1 2.0041 -8.0424 -0.4595 42 1 -0.3741 -9.5453 -1.5737 43 1 1.3141 -10.1096 -1.5716 44 1 -0.4491 -11.8520 -2.3938 45 1 0.8741 -12.2778 -3.5246 46 1 -1.9959 -12.2026 -4.0720 47 1 -0.6748 -12.6289 -5.2033 48 1 -0.5169 -10.4422 -6.0360 49 1 -2.2109 -10.3319 -5.4704 50 1 3.6909 -3.1642 -1.3647 51 1 2.3001 -4.0010 -2.1016 52 1 0.7613 -2.2907 -1.2403 53 1 2.0702 -1.4873 -2.1407 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277412333.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:03 Heat of formation + Delta-G solvation = -128.769347 kcal Electronic energy + Delta-G solvation = -29887.339558 eV Core-core repulsion = 25758.793441 eV Total energy + Delta-G solvation = -4128.546117 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.29943 -40.43364 -39.14207 -38.47721 -36.69684 -34.06483 -33.39172 -32.99892 -31.95117 -31.46198 -30.79782 -28.03573 -26.78296 -26.15526 -24.88124 -24.02670 -23.29731 -22.91127 -21.90273 -21.07357 -19.71456 -18.75647 -18.53380 -17.78780 -17.43501 -17.03705 -16.97357 -16.70126 -16.53111 -16.43640 -15.82191 -15.70398 -15.17368 -15.05758 -14.82380 -14.68601 -14.61469 -14.47140 -14.06920 -13.90081 -13.55502 -13.20789 -13.13851 -13.01672 -12.79355 -12.67450 -12.65535 -12.48526 -12.35122 -12.24749 -12.18750 -12.10422 -12.07460 -12.01577 -11.81687 -11.59356 -11.48186 -11.23202 -10.87602 -10.73554 -10.64726 -10.61355 -9.67163 -8.75495 -7.80518 -5.28896 1.46889 1.48117 1.56404 1.58400 1.86613 2.51768 2.64026 2.95017 3.33230 3.55145 3.64905 3.66989 3.80594 3.90269 4.00129 4.02786 4.07453 4.14104 4.18600 4.20201 4.28965 4.36969 4.40627 4.41913 4.50565 4.51605 4.55908 4.57940 4.72109 4.76761 4.82051 4.83561 4.84461 4.85927 4.91330 4.92943 4.96644 5.01544 5.10029 5.11720 5.17220 5.25755 5.37704 5.51198 5.60936 5.68023 5.72438 5.90152 6.15574 6.35158 6.41137 7.10498 7.17181 7.90218 8.35109 9.23092 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.022517 B = 0.001755 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1243.182193 B =15947.172690 C =16600.282063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.184 3.816 2 N -0.612 5.612 3 C -0.257 4.257 4 H 0.076 0.924 5 C -0.058 4.058 6 N -0.943 5.943 7 Si 0.968 3.032 8 H -0.262 1.262 9 H -0.294 1.294 10 H -0.296 1.296 11 C 0.172 3.828 12 C -0.132 4.132 13 C 0.123 3.877 14 N -0.606 5.606 15 C 0.517 3.483 16 O -0.588 6.588 17 C -0.130 4.130 18 C 0.083 3.917 19 O -0.398 6.398 20 C 0.063 3.937 21 C 0.071 3.929 22 H 0.079 0.921 23 C -0.145 4.145 24 C -0.151 4.151 25 C 0.032 3.968 26 O -0.399 6.399 27 C 0.114 3.886 28 C -0.138 4.138 29 H -0.005 1.005 30 H 0.014 0.986 31 H 0.024 0.976 32 H 0.246 0.754 33 H 0.065 0.935 34 H 0.039 0.961 35 H 0.052 0.948 36 H 0.076 0.924 37 H 0.084 0.916 38 H 0.127 0.873 39 H 0.112 0.888 40 H 0.043 0.957 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.100 0.900 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.092 0.908 51 H 0.114 0.886 52 H 0.051 0.949 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.018 -29.588 -12.340 32.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.334 5.334 3 C -0.387 4.387 4 H 0.094 0.906 5 C -0.253 4.253 6 N -0.590 5.590 7 Si 0.797 3.203 8 H -0.186 1.186 9 H -0.221 1.221 10 H -0.223 1.223 11 C 0.066 3.934 12 C -0.172 4.172 13 C 0.000 4.000 14 N -0.338 5.338 15 C 0.307 3.693 16 O -0.470 6.470 17 C -0.170 4.170 18 C 0.006 3.994 19 O -0.318 6.318 20 C -0.013 4.013 21 C 0.014 3.986 22 H 0.097 0.903 23 C -0.183 4.183 24 C -0.189 4.189 25 C -0.044 4.044 26 O -0.318 6.318 27 C -0.009 4.009 28 C -0.178 4.178 29 H 0.013 0.987 30 H 0.033 0.967 31 H 0.043 0.957 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.058 0.942 35 H 0.070 0.930 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.145 0.855 39 H 0.130 0.870 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.118 0.882 46 H 0.097 0.903 47 H 0.115 0.885 48 H 0.085 0.915 49 H 0.114 0.886 50 H 0.110 0.890 51 H 0.132 0.868 52 H 0.070 0.930 53 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.768 -29.444 -11.880 31.871 hybrid contribution -0.253 1.336 0.673 1.517 sum 2.515 -28.108 -11.208 30.365 Atomic orbital electron populations 1.20384 0.83412 0.95439 0.96879 1.44206 1.01744 1.01482 1.85936 1.19656 0.98508 0.86606 1.33927 0.90628 1.25823 0.98588 1.01988 0.98853 1.70259 1.20128 1.27341 1.41305 0.85176 0.78145 0.80084 0.76887 1.18644 1.22123 1.22296 1.20549 0.95573 0.84646 0.92664 1.22288 0.99234 0.95654 1.00071 1.21493 1.00159 0.91943 0.86380 1.48232 1.65399 1.11812 1.08342 1.20852 0.75492 0.81522 0.91404 1.90666 1.53961 1.66945 1.35389 1.21462 1.05937 0.94777 0.94792 1.22032 0.99923 0.92005 0.85445 1.87820 1.87691 1.26407 1.29849 1.22738 0.99392 0.82707 0.96460 1.23205 0.90218 0.92439 0.92766 0.90288 1.22932 1.00768 0.93971 1.00583 1.22943 1.00190 0.97645 0.98079 1.23615 1.01522 0.87947 0.91335 1.89274 1.47957 1.43617 1.50997 1.22070 1.01174 0.92607 0.85002 1.22388 1.00046 0.96075 0.99248 0.98674 0.96690 0.95727 0.94516 0.91669 0.94169 0.92956 0.90567 0.89826 0.85484 0.87002 0.93872 0.92311 0.92970 0.89777 0.90046 0.88152 0.90272 0.88529 0.91491 0.88613 0.88996 0.86834 0.93014 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.29 8.03 127.77 1.03 10.32 16 2 N -0.61 -30.03 2.81 -702.62 -1.97 -32.00 16 3 C -0.26 -13.84 9.59 84.04 0.81 -13.04 16 4 H 0.08 3.89 7.82 -2.91 -0.02 3.87 16 5 C -0.06 -3.26 5.12 84.86 0.43 -2.82 16 6 N -0.94 -56.69 10.64 21.65 0.23 -56.46 16 7 Si 0.97 45.06 29.57 68.60 2.03 47.09 16 8 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 9 H -0.29 -13.77 7.11 99.48 0.71 -13.07 16 10 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 11 C 0.17 6.54 2.55 45.02 0.11 6.65 16 12 C -0.13 -4.83 5.34 30.67 0.16 -4.67 16 13 C 0.12 3.65 6.43 86.36 0.56 4.20 16 14 N -0.61 -15.78 2.97 -818.05 -2.43 -18.21 16 15 C 0.52 13.86 7.70 87.65 0.67 14.53 16 16 O -0.59 -20.08 15.40 -3.04 -0.05 -20.13 16 17 C -0.13 -2.56 4.42 29.85 0.13 -2.43 16 18 C 0.08 1.77 5.23 71.98 0.38 2.15 16 19 O -0.40 -8.62 10.34 -148.95 -1.54 -10.16 16 20 C 0.06 1.06 5.54 71.98 0.40 1.46 16 21 C 0.07 1.08 3.58 31.10 0.11 1.19 16 22 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 23 C -0.14 -1.29 6.63 31.61 0.21 -1.08 16 24 C -0.15 -1.21 7.09 31.61 0.22 -0.99 16 25 C 0.03 0.40 7.62 72.48 0.55 0.95 16 26 O -0.40 -8.16 11.37 -148.95 -1.69 -9.85 16 27 C 0.11 2.41 6.37 86.51 0.55 2.97 16 28 C -0.14 -4.09 5.34 30.82 0.16 -3.92 16 29 H -0.01 -0.28 7.42 -2.38 -0.02 -0.30 16 30 H 0.01 0.80 7.22 -2.39 -0.02 0.78 16 31 H 0.02 1.08 6.46 -2.39 -0.02 1.06 16 32 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 33 H 0.07 2.44 7.86 -2.39 -0.02 2.42 16 34 H 0.04 1.60 7.72 -2.39 -0.02 1.58 16 35 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.08 2.43 7.01 -2.39 -0.02 2.41 16 37 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.13 1.86 7.93 -2.39 -0.02 1.84 16 39 H 0.11 2.07 7.70 -2.38 -0.02 2.05 16 40 H 0.04 1.04 8.10 -2.39 -0.02 1.02 16 41 H 0.06 1.22 8.10 -2.39 -0.02 1.20 16 42 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.08 0.68 7.87 -2.39 -0.02 0.66 16 45 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 47 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 48 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.09 1.65 8.14 -2.38 -0.02 1.63 16 51 H 0.11 1.75 5.93 -2.39 -0.01 1.74 16 52 H 0.05 1.66 6.72 -2.39 -0.02 1.64 16 53 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -73.13 410.86 1.94 -71.19 By element: Atomic # 1 Polarization: 12.19 SS G_CDS: 0.87 Total: 13.05 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.49 Total: 15.47 kcal Atomic # 7 Polarization: -102.49 SS G_CDS: -4.17 Total: -106.66 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -3.28 Total: -40.14 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -73.13 1.94 -71.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277412333.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.582 kcal (2) G-P(sol) polarization free energy of solvation -73.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds