Wall clock time and date at job start Sat Apr 11 2020 06:12:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00025 * 2 1 4 4 C 1.52996 * 109.47136 * 179.97438 * 3 2 1 5 5 C 1.50703 * 109.54576 * 268.09815 * 4 3 2 6 6 O 1.21280 * 120.00066 * 235.00460 * 5 4 3 7 7 N 1.34777 * 119.99793 * 55.00652 * 5 4 3 8 8 C 1.47419 * 125.64786 * 5.79580 * 7 5 4 9 9 C 1.55135 * 104.72239 * 155.81727 * 8 7 5 10 10 C 1.55161 * 101.48237 * 37.29843 * 9 8 7 11 11 C 1.47023 * 125.64557 * 186.10502 * 7 5 4 12 12 H 1.08994 * 109.88545 * 300.43960 * 11 7 5 13 13 C 1.52995 * 109.88413 * 61.45112 * 11 7 5 14 14 N 1.46501 * 109.47427 * 303.38351 * 13 11 7 15 15 C 1.46503 * 119.99556 * 278.70243 * 14 13 11 16 16 C 1.36935 * 120.00672 * 98.69853 * 14 13 11 17 17 H 1.08007 * 119.99773 * 318.82063 * 16 14 13 18 18 C 1.38807 * 120.00361 * 138.81562 * 16 14 13 19 19 N 1.31618 * 119.99773 * 357.53951 * 18 16 14 20 20 Si 1.86799 * 120.00243 * 177.53595 * 18 16 14 21 21 H 1.48498 * 109.47097 * 90.00359 * 20 18 16 22 22 H 1.48497 * 109.47428 * 210.00447 * 20 18 16 23 23 H 1.48507 * 109.47105 * 330.00209 * 20 18 16 24 24 C 1.53176 * 109.54559 * 147.91998 * 4 3 2 25 25 C 1.53093 * 109.16810 * 183.15295 * 24 4 3 26 26 O 1.42897 * 109.41270 * 57.60922 * 25 24 4 27 27 C 1.42906 * 114.10127 * 298.84293 * 26 25 24 28 28 C 1.53099 * 109.41254 * 61.15498 * 27 26 25 29 29 H 1.09003 * 109.46901 * 59.99439 * 1 2 3 30 30 H 1.09000 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46894 * 299.99966 * 1 2 3 32 32 H 1.09005 * 109.46912 * 60.00266 * 3 2 1 33 33 H 1.08997 * 109.47593 * 300.00493 * 3 2 1 34 34 H 1.09000 * 110.37005 * 274.74744 * 8 7 5 35 35 H 1.08997 * 110.36787 * 37.07368 * 8 7 5 36 36 H 1.08999 * 111.19535 * 279.19334 * 9 8 7 37 37 H 1.09003 * 110.93781 * 155.28474 * 9 8 7 38 38 H 1.09009 * 110.71633 * 205.97200 * 10 9 8 39 39 H 1.08995 * 110.87626 * 82.76577 * 10 9 8 40 40 H 1.09004 * 109.47182 * 63.37809 * 13 11 7 41 41 H 1.09001 * 109.47351 * 183.37789 * 13 11 7 42 42 H 1.09004 * 109.47268 * 84.26064 * 15 14 13 43 43 H 1.08995 * 109.47002 * 204.25808 * 15 14 13 44 44 H 1.08996 * 109.47134 * 324.25665 * 15 14 13 45 45 H 0.97005 * 120.00033 * 179.97438 * 19 18 16 46 46 H 1.09003 * 109.52462 * 63.24766 * 24 4 3 47 47 H 1.09003 * 109.57311 * 303.09361 * 24 4 3 48 48 H 1.08996 * 109.48073 * 177.58997 * 25 24 4 49 49 H 1.09003 * 109.47892 * 297.62766 * 25 24 4 50 50 H 1.09000 * 109.47948 * 301.18099 * 27 26 25 51 51 H 1.08995 * 109.49519 * 181.14873 * 27 26 25 52 52 H 1.09003 * 109.51902 * 182.48462 * 28 27 26 53 53 H 1.08998 * 109.51923 * 62.30150 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.0412 1.1921 1.4203 6 8 4.8780 2.0008 1.7616 7 7 3.5635 0.2999 2.3104 8 6 2.6408 -0.8086 2.0052 9 6 2.8908 -1.8500 3.1276 10 6 3.1239 -0.9307 4.3556 11 6 3.8713 0.2750 3.7479 12 1 4.9449 0.1582 3.8952 13 6 3.3943 1.5719 4.4047 14 7 4.0124 2.7166 3.7311 15 6 5.3783 3.1191 4.0756 16 6 3.3137 3.4104 2.7795 17 1 2.7081 2.8793 2.0599 18 6 3.3834 4.7961 2.7398 19 7 4.0823 5.4461 3.6461 20 14 2.4857 5.7385 1.3999 21 1 1.1135 6.0689 1.8615 22 1 3.2218 6.9925 1.0984 23 1 2.4080 4.9033 0.1743 24 6 4.1432 2.3633 -0.7660 25 6 5.6633 2.1925 -0.8277 26 8 5.9761 0.9440 -1.4484 27 6 5.4740 -0.1970 -0.7497 28 6 3.9462 -0.1222 -0.6847 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8464 -0.8899 34 1 1.6082 -0.4606 2.0306 35 1 2.8734 -1.2384 1.0310 36 1 3.7747 -2.4520 2.9168 37 1 2.0154 -2.4827 3.2739 38 1 3.7419 -1.4318 5.1007 39 1 2.1754 -0.6167 4.7913 40 1 2.3098 1.6437 4.3217 41 1 3.6789 1.5723 5.4569 42 1 6.0884 2.5192 3.5062 43 1 5.5181 4.1729 3.8351 44 1 5.5447 2.9645 5.1416 45 1 4.1314 6.4145 3.6181 46 1 3.9018 3.2945 -0.2534 47 1 3.7380 2.3888 -1.7776 48 1 6.0971 3.0062 -1.4090 49 1 6.0722 2.2089 0.1825 50 1 5.8804 -0.2119 0.2616 51 1 5.7715 -1.1048 -1.2744 52 1 3.5640 -0.9686 -0.1141 53 1 3.5370 -0.1480 -1.6947 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281940670.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:19 Heat of formation + Delta-G solvation = -73.801791 kcal Electronic energy + Delta-G solvation = -35423.639824 eV Core-core repulsion = 31297.477279 eV Total energy + Delta-G solvation = -4126.162544 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.08002 -39.77254 -38.71521 -37.84408 -36.83129 -34.99158 -33.29656 -32.54075 -31.66719 -30.51744 -29.12240 -27.81649 -27.02711 -26.47868 -24.98995 -24.45376 -23.68780 -22.93924 -22.06040 -21.01912 -19.37521 -18.80210 -17.62644 -17.46109 -17.24442 -17.13645 -16.89536 -16.67413 -16.62034 -15.89097 -15.77168 -15.39816 -15.35138 -14.97981 -14.72941 -14.48939 -14.20937 -13.93191 -13.66597 -13.52120 -13.35853 -13.25168 -13.12616 -13.05589 -12.90484 -12.82490 -12.60005 -12.50373 -12.28488 -12.25143 -12.13217 -11.85453 -11.75908 -11.69513 -11.58596 -11.48058 -11.36101 -11.19189 -10.56688 -10.50264 -10.40625 -9.82799 -9.21564 -8.10935 -7.52585 -5.29953 1.37272 1.38877 1.46194 2.12271 2.44484 2.53748 2.83576 2.95849 3.46731 3.53717 3.64264 3.78512 3.82587 3.88389 4.07801 4.13775 4.18968 4.26593 4.31690 4.34945 4.37149 4.44800 4.57200 4.60313 4.65433 4.66429 4.70502 4.73837 4.79552 4.84257 4.86089 4.92134 4.96651 4.99785 5.00984 5.06226 5.12275 5.13051 5.21730 5.24682 5.36789 5.41948 5.48005 5.52124 5.71513 5.92703 5.99488 6.16308 6.24855 6.67378 7.10577 7.34152 7.88322 8.02084 8.57850 9.33347 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009360 B = 0.007146 C = 0.005997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2990.653016 B = 3917.554638 C = 4667.514744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.379 6.379 3 C 0.082 3.918 4 C -0.066 4.066 5 C 0.521 3.479 6 O -0.500 6.500 7 N -0.613 5.613 8 C 0.098 3.902 9 C -0.123 4.123 10 C -0.117 4.117 11 C 0.121 3.879 12 H 0.035 0.965 13 C 0.140 3.860 14 N -0.584 5.584 15 C 0.148 3.852 16 C -0.180 4.180 17 H 0.054 0.946 18 C -0.059 4.059 19 N -0.938 5.938 20 Si 0.935 3.065 21 H -0.289 1.289 22 H -0.302 1.302 23 H -0.259 1.259 24 C -0.126 4.126 25 C 0.059 3.941 26 O -0.395 6.395 27 C 0.058 3.942 28 C -0.128 4.128 29 H 0.045 0.955 30 H 0.113 0.887 31 H 0.034 0.966 32 H 0.033 0.967 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.097 0.903 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.078 0.922 40 H 0.041 0.959 41 H 0.034 0.966 42 H -0.016 1.016 43 H 0.068 0.932 44 H -0.008 1.008 45 H 0.240 0.760 46 H 0.054 0.946 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.054 0.946 50 H 0.025 0.975 51 H 0.120 0.880 52 H 0.108 0.892 53 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.642 -18.488 -7.641 21.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.298 6.298 3 C 0.005 3.995 4 C -0.070 4.070 5 C 0.308 3.692 6 O -0.373 6.373 7 N -0.349 5.349 8 C -0.023 4.023 9 C -0.161 4.161 10 C -0.155 4.155 11 C 0.014 3.986 12 H 0.053 0.947 13 C 0.013 3.987 14 N -0.305 5.305 15 C 0.002 3.998 16 C -0.311 4.311 17 H 0.071 0.929 18 C -0.252 4.252 19 N -0.587 5.587 20 Si 0.765 3.235 21 H -0.216 1.216 22 H -0.229 1.229 23 H -0.183 1.183 24 C -0.164 4.164 25 C -0.017 4.017 26 O -0.314 6.314 27 C -0.019 4.019 28 C -0.165 4.165 29 H 0.064 0.936 30 H 0.131 0.869 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.094 0.906 37 H 0.123 0.877 38 H 0.107 0.893 39 H 0.097 0.903 40 H 0.060 0.940 41 H 0.052 0.948 42 H 0.002 0.998 43 H 0.086 0.914 44 H 0.011 0.989 45 H 0.050 0.950 46 H 0.073 0.927 47 H 0.105 0.895 48 H 0.112 0.888 49 H 0.072 0.928 50 H 0.044 0.956 51 H 0.138 0.862 52 H 0.126 0.874 53 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.905 -17.975 -7.677 20.418 hybrid contribution -0.504 1.855 0.076 1.924 sum -6.409 -16.119 -7.601 18.939 Atomic orbital electron populations 1.22908 0.80030 1.04224 1.00118 1.87944 1.20782 1.25858 1.95217 1.22290 0.91355 0.85675 1.00169 1.20790 0.94724 0.98384 0.93085 1.19860 0.83067 0.79949 0.86292 1.90792 1.32184 1.36206 1.78124 1.48282 1.48487 1.30851 1.07312 1.22966 0.93369 0.86328 0.99640 1.22855 1.03284 0.96615 0.93377 1.22597 1.00722 0.93990 0.98237 1.22172 0.97869 0.96640 0.81878 0.94713 1.21340 0.95823 0.87593 0.93971 1.43555 1.10941 1.32431 1.43578 1.20828 0.85419 1.01152 0.92354 1.18998 1.19590 0.87205 1.05309 0.92875 1.25891 1.01413 0.98138 0.99743 1.69896 1.45412 1.05921 1.37459 0.85751 0.78339 0.78622 0.80811 1.21611 1.22901 1.18349 1.21985 0.97030 0.97431 0.99973 1.22663 0.94378 0.85922 0.98749 1.87818 1.77458 1.14557 1.51564 1.22722 0.93548 0.89365 0.96241 1.22281 0.95867 0.96146 1.02236 0.93640 0.86899 0.94736 0.94861 0.92143 0.91693 0.88526 0.90592 0.87744 0.89347 0.90347 0.94023 0.94801 0.99838 0.91423 0.98913 0.95009 0.92702 0.89463 0.88793 0.92792 0.95632 0.86169 0.87402 0.89151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.58 113.37 1.20 1.59 16 2 O -0.38 -8.52 5.33 -148.98 -0.79 -9.32 16 3 C 0.08 2.42 4.90 71.98 0.35 2.78 16 4 C -0.07 -2.14 0.49 -52.81 -0.03 -2.17 16 5 C 0.52 20.25 2.53 87.66 0.22 20.47 16 6 O -0.50 -24.20 7.51 -3.03 -0.02 -24.23 16 7 N -0.61 -20.66 3.04 -787.63 -2.39 -23.06 16 8 C 0.10 2.36 4.66 86.94 0.41 2.77 16 9 C -0.12 -2.28 7.10 32.07 0.23 -2.05 16 10 C -0.12 -2.71 6.48 31.79 0.21 -2.50 16 11 C 0.12 4.17 3.28 45.34 0.15 4.32 16 12 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 13 C 0.14 5.97 5.34 86.38 0.46 6.43 16 14 N -0.58 -30.57 1.62 -726.94 -1.18 -31.74 16 15 C 0.15 8.19 9.38 127.77 1.20 9.39 16 16 C -0.18 -9.87 6.39 84.03 0.54 -9.33 16 17 H 0.05 2.84 4.22 -2.91 -0.01 2.83 16 18 C -0.06 -3.43 5.30 84.86 0.45 -2.98 16 19 N -0.94 -58.40 10.75 21.65 0.23 -58.17 16 20 Si 0.94 46.20 29.46 68.60 2.02 48.22 16 21 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 22 H -0.30 -15.36 7.11 99.48 0.71 -14.65 16 23 H -0.26 -11.78 6.50 99.48 0.65 -11.13 16 24 C -0.13 -4.45 4.42 30.68 0.14 -4.32 16 25 C 0.06 2.14 6.55 72.01 0.47 2.62 16 26 O -0.39 -12.99 10.77 -148.98 -1.60 -14.60 16 27 C 0.06 1.60 6.62 72.02 0.48 2.07 16 28 C -0.13 -3.27 4.09 30.69 0.13 -3.14 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.03 0.64 8.14 -2.39 -0.02 0.63 16 32 H 0.03 1.20 6.06 -2.38 -0.01 1.19 16 33 H 0.06 1.67 7.75 -2.39 -0.02 1.65 16 34 H 0.06 1.60 6.35 -2.39 -0.02 1.59 16 35 H 0.10 2.12 3.69 -2.39 -0.01 2.12 16 36 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 39 H 0.08 1.75 7.80 -2.39 -0.02 1.73 16 40 H 0.04 1.79 7.90 -2.39 -0.02 1.77 16 41 H 0.03 1.42 8.06 -2.39 -0.02 1.40 16 42 H -0.02 -0.92 6.84 -2.38 -0.02 -0.94 16 43 H 0.07 4.24 5.14 -2.39 -0.01 4.23 16 44 H -0.01 -0.41 8.05 -2.39 -0.02 -0.43 16 45 H 0.24 14.68 8.31 -92.70 -0.77 13.91 16 46 H 0.05 2.33 7.39 -2.39 -0.02 2.32 16 47 H 0.09 2.63 8.06 -2.39 -0.02 2.61 16 48 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 49 H 0.05 2.35 5.64 -2.39 -0.01 2.34 16 50 H 0.03 0.83 7.38 -2.39 -0.02 0.81 16 51 H 0.12 2.53 8.14 -2.39 -0.02 2.51 16 52 H 0.11 2.44 4.22 -2.39 -0.01 2.43 16 53 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -72.21 371.56 3.70 -68.51 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: 0.84 Total: 18.43 kcal Atomic # 6 Polarization: 19.36 SS G_CDS: 6.59 Total: 25.95 kcal Atomic # 7 Polarization: -109.64 SS G_CDS: -3.33 Total: -112.97 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -2.42 Total: -48.14 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.02 Total: 48.22 kcal Total: -72.21 3.70 -68.51 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281940670.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.289 kcal (2) G-P(sol) polarization free energy of solvation -72.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds