Wall clock time and date at job start Sat Apr 11 2020 06:11:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42904 * 113.99691 * 2 1 4 4 C 1.53005 * 109.46705 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.46830 * 65.00506 * 4 3 2 6 6 C 1.36934 * 119.99978 * 269.99155 * 5 4 3 7 7 H 1.08000 * 120.00189 * 145.91106 * 6 5 4 8 8 C 1.38813 * 120.00024 * 325.91672 * 6 5 4 9 9 N 1.31622 * 120.00102 * 157.02523 * 8 6 5 10 10 Si 1.86801 * 120.00143 * 337.02391 * 8 6 5 11 11 H 1.48500 * 109.47175 * 95.41430 * 10 8 6 12 12 H 1.48494 * 109.47443 * 215.41774 * 10 8 6 13 13 H 1.48504 * 109.47068 * 335.41929 * 10 8 6 14 14 C 1.46499 * 120.00300 * 90.00054 * 5 4 3 15 15 C 1.53038 * 109.45951 * 237.96627 * 14 5 4 16 16 C 1.53191 * 109.31237 * 178.59955 * 15 14 5 17 17 N 1.46921 * 108.76826 * 54.65278 * 16 15 14 18 18 C 1.34775 * 120.63038 * 126.40213 * 17 16 15 19 19 O 1.21278 * 120.00254 * 5.02035 * 18 17 16 20 20 C 1.50703 * 119.99912 * 185.01494 * 18 17 16 21 21 H 1.08996 * 109.52281 * 46.71995 * 20 18 17 22 22 C 1.53183 * 109.52016 * 166.91005 * 20 18 17 23 23 C 1.53179 * 109.03356 * 176.88783 * 22 20 18 24 24 C 1.53091 * 109.16458 * 303.01330 * 23 22 20 25 25 O 1.42903 * 109.41070 * 57.61110 * 24 23 22 26 26 C 1.42906 * 114.10112 * 298.84012 * 25 24 23 27 27 C 1.46924 * 118.74026 * 306.38831 * 17 16 15 28 28 C 1.53040 * 109.46544 * 117.90898 * 14 5 4 29 29 H 1.08996 * 109.47159 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47516 * 59.99366 * 1 2 3 31 31 H 1.09001 * 109.46874 * 299.99245 * 1 2 3 32 32 H 1.08999 * 109.47117 * 300.00562 * 3 2 1 33 33 H 1.08997 * 109.46956 * 60.00713 * 3 2 1 34 34 H 1.08998 * 109.46622 * 184.99862 * 4 3 2 35 35 H 1.08995 * 109.47310 * 304.99732 * 4 3 2 36 36 H 0.97004 * 120.00036 * 179.97438 * 9 8 6 37 37 H 1.08999 * 109.45749 * 357.93631 * 14 5 4 38 38 H 1.09000 * 109.49491 * 298.56511 * 15 14 5 39 39 H 1.09000 * 109.49781 * 58.66137 * 15 14 5 40 40 H 1.09001 * 109.60041 * 294.86533 * 16 15 14 41 41 H 1.09003 * 109.58445 * 174.43614 * 16 15 14 42 42 H 1.09001 * 109.54154 * 296.75113 * 22 20 18 43 43 H 1.08995 * 109.55151 * 57.01592 * 22 20 18 44 44 H 1.08999 * 109.51934 * 183.10805 * 23 22 20 45 45 H 1.09001 * 109.57829 * 62.95712 * 23 22 20 46 46 H 1.08993 * 109.48257 * 297.63049 * 24 23 22 47 47 H 1.08995 * 109.49303 * 177.59474 * 24 23 22 48 48 H 1.08993 * 109.47929 * 301.18210 * 26 25 24 49 49 H 1.08997 * 109.48587 * 181.14098 * 26 25 24 50 50 H 1.09003 * 109.58367 * 293.81410 * 27 17 16 51 51 H 1.09001 * 109.58653 * 173.39431 * 27 17 16 52 52 H 1.08997 * 109.49625 * 301.34164 * 28 14 5 53 53 H 1.09006 * 109.49453 * 61.43215 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9755 0.5646 -1.2528 6 6 4.0967 -0.7968 -1.3370 7 1 3.8751 -1.3023 -2.2653 8 6 4.5044 -1.5272 -0.2292 9 7 4.2027 -2.8050 -0.1360 10 14 5.4812 -0.6967 1.1293 11 1 4.5580 -0.2629 2.2086 12 1 6.4734 -1.6535 1.6816 13 1 6.1886 0.4868 0.5778 14 6 4.2862 1.4008 -2.4148 15 6 3.4027 0.9849 -3.5932 16 6 3.7055 1.8843 -4.7957 17 7 5.1471 1.8312 -5.0745 18 6 5.5973 1.5193 -6.3059 19 8 4.8126 1.3685 -7.2183 20 6 7.0758 1.3581 -6.5492 21 1 7.5082 0.7363 -5.7654 22 6 7.3010 0.6962 -7.9122 23 6 8.8063 0.6086 -8.1823 24 6 9.4123 2.0126 -8.1111 25 8 9.1401 2.5829 -6.8293 26 6 7.7486 2.7332 -6.5411 27 6 6.0886 2.1250 -3.9855 28 6 5.7588 1.2232 -2.7919 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 0.5137 0.8901 32 1 1.6884 1.8465 -0.8899 33 1 1.6886 1.8463 0.8900 34 1 3.9784 2.1765 0.0889 35 1 3.8514 0.5683 0.8409 36 1 4.4879 -3.3155 0.6380 37 1 4.0975 2.4462 -2.1707 38 1 3.6089 -0.0532 -3.8538 39 1 2.3537 1.0894 -3.3160 40 1 3.4150 2.9098 -4.5677 41 1 3.1519 1.5303 -5.6653 42 1 6.8727 -0.3061 -7.9061 43 1 6.8251 1.2927 -8.6905 44 1 8.9745 0.1892 -9.1742 45 1 9.2753 -0.0291 -7.4330 46 1 8.9727 2.6381 -8.8879 47 1 10.4902 1.9515 -8.2602 48 1 7.2872 3.3681 -7.2974 49 1 7.6280 3.1909 -5.5592 50 1 5.9924 3.1702 -3.6914 51 1 7.1073 1.9298 -4.3205 52 1 6.3869 1.4972 -1.9444 53 1 5.9426 0.1828 -3.0603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323746434.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:33 Heat of formation + Delta-G solvation = -119.341175 kcal Electronic energy + Delta-G solvation = -32109.153308 eV Core-core repulsion = 27981.016027 eV Total energy + Delta-G solvation = -4128.137280 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.71121 -39.94902 -39.18302 -38.33083 -36.67479 -34.69675 -33.90794 -33.11487 -32.34279 -31.51507 -29.95229 -27.16697 -26.87854 -26.07847 -25.46285 -24.36061 -24.08698 -22.84085 -21.83729 -20.99360 -20.03276 -18.54326 -18.12550 -17.51136 -17.41364 -17.27447 -17.01914 -16.63853 -16.41330 -16.17238 -15.92132 -15.66943 -15.43560 -15.22601 -15.00438 -14.82885 -14.51300 -14.32549 -14.16955 -14.02305 -13.71396 -13.60338 -13.40266 -13.28300 -12.91571 -12.88885 -12.60361 -12.48727 -12.31563 -12.20172 -12.15732 -12.05372 -11.85912 -11.79832 -11.64008 -11.39586 -11.27097 -11.13689 -10.84173 -10.48612 -10.48117 -10.31811 -9.64110 -8.68857 -8.01053 -5.33637 1.36458 1.45653 1.51379 1.55450 1.98620 2.55300 2.86601 3.10017 3.17999 3.43112 3.49029 3.65607 3.77074 3.90211 3.98120 4.06017 4.14414 4.20805 4.21934 4.32792 4.35560 4.41579 4.42895 4.44988 4.55548 4.57228 4.60669 4.63166 4.65635 4.68468 4.72397 4.77170 4.79530 4.82947 4.85711 4.87611 4.92053 5.02666 5.06817 5.09148 5.11230 5.19560 5.29873 5.45246 5.57570 5.62880 6.08318 6.14765 6.32199 6.39995 6.61178 7.10053 7.13929 7.82334 8.17627 9.20310 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015248 B = 0.003186 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.808210 B = 8786.649734 C = 9558.217033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.399 6.399 3 C 0.046 3.954 4 C 0.123 3.877 5 N -0.603 5.603 6 C -0.210 4.210 7 H 0.029 0.971 8 C -0.021 4.021 9 N -0.958 5.958 10 Si 0.938 3.062 11 H -0.286 1.286 12 H -0.324 1.324 13 H -0.245 1.245 14 C 0.175 3.825 15 C -0.125 4.125 16 C 0.122 3.878 17 N -0.605 5.605 18 C 0.518 3.482 19 O -0.583 6.583 20 C -0.140 4.140 21 H 0.105 0.895 22 C -0.104 4.104 23 C -0.150 4.150 24 C 0.053 3.947 25 O -0.388 6.388 26 C 0.076 3.924 27 C 0.108 3.892 28 C -0.138 4.138 29 H 0.071 0.929 30 H 0.044 0.956 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.033 0.967 36 H 0.253 0.747 37 H 0.091 0.909 38 H 0.026 0.974 39 H 0.063 0.937 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.114 0.886 48 H 0.059 0.941 49 H 0.117 0.883 50 H 0.105 0.895 51 H 0.101 0.899 52 H 0.075 0.925 53 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.113 17.230 -10.401 21.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.318 6.318 3 C -0.032 4.032 4 C -0.002 4.002 5 N -0.325 5.325 6 C -0.340 4.340 7 H 0.047 0.953 8 C -0.215 4.215 9 N -0.604 5.604 10 Si 0.769 3.231 11 H -0.214 1.214 12 H -0.254 1.254 13 H -0.168 1.168 14 C 0.070 3.930 15 C -0.165 4.165 16 C 0.000 4.000 17 N -0.336 5.336 18 C 0.307 3.693 19 O -0.464 6.464 20 C -0.162 4.162 21 H 0.123 0.877 22 C -0.142 4.142 23 C -0.188 4.188 24 C -0.023 4.023 25 O -0.307 6.307 26 C -0.001 4.001 27 C -0.014 4.014 28 C -0.178 4.178 29 H 0.090 0.910 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.073 0.927 34 H 0.115 0.885 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.045 0.955 39 H 0.082 0.918 40 H 0.113 0.887 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.086 0.914 44 H 0.112 0.888 45 H 0.090 0.910 46 H 0.078 0.922 47 H 0.132 0.868 48 H 0.077 0.923 49 H 0.135 0.865 50 H 0.123 0.877 51 H 0.119 0.881 52 H 0.094 0.906 53 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 5.980 16.941 -10.656 20.888 hybrid contribution -0.540 -0.981 0.807 1.381 sum 5.439 15.959 -9.849 19.527 Atomic orbital electron populations 1.22759 0.81606 1.02204 1.00120 1.88240 1.19609 1.28695 1.95212 1.23301 0.96007 0.84360 0.99578 1.21548 0.92072 0.97693 0.88898 1.44221 1.76397 1.02354 1.09498 1.18196 1.36548 0.82034 0.97236 0.95322 1.25810 1.00181 0.95172 1.00374 1.70047 1.48964 1.10327 1.31028 0.85966 0.78751 0.78280 0.80096 1.21439 1.25396 1.16820 1.20573 0.92285 0.94243 0.85933 1.22141 1.00290 0.98366 0.95747 1.21570 0.80494 1.00663 0.97319 1.48263 1.07805 1.67729 1.09837 1.20845 0.91306 0.75225 0.81917 1.90642 1.59008 1.52875 1.43864 1.22013 0.91356 1.01525 1.01260 0.87690 1.21409 0.97278 1.00641 0.94851 1.22202 0.94025 0.98717 1.03852 1.22825 1.02166 0.92644 0.84700 1.87958 1.23184 1.82731 1.36785 1.22614 0.81653 0.92573 1.03265 1.22128 0.93136 1.00490 0.85626 1.22274 0.98386 0.99367 0.97726 0.91001 0.93739 0.93119 0.92920 0.92678 0.88526 0.94929 0.93832 0.89133 0.95547 0.91824 0.88658 0.91259 0.92568 0.91440 0.88767 0.91048 0.92224 0.86753 0.92321 0.86517 0.87694 0.88104 0.90645 0.94399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.96 11.01 113.37 1.25 2.21 16 2 O -0.40 -17.31 10.18 -148.98 -1.52 -18.82 16 3 C 0.05 1.61 6.28 71.98 0.45 2.06 16 4 C 0.12 4.69 4.91 86.38 0.42 5.12 16 5 N -0.60 -25.62 2.06 -677.90 -1.40 -27.02 16 6 C -0.21 -11.47 8.29 84.03 0.70 -10.78 16 7 H 0.03 1.83 6.92 -2.91 -0.02 1.81 16 8 C -0.02 -1.22 5.32 84.86 0.45 -0.76 16 9 N -0.96 -61.57 13.97 21.65 0.30 -61.27 16 10 Si 0.94 45.88 24.93 68.60 1.71 47.59 16 11 H -0.29 -13.71 6.66 99.48 0.66 -13.04 16 12 H -0.32 -16.59 7.11 99.48 0.71 -15.88 16 13 H -0.24 -10.65 7.11 99.48 0.71 -9.94 16 14 C 0.18 5.76 2.59 45.02 0.12 5.87 16 15 C -0.13 -4.26 5.26 30.67 0.16 -4.09 16 16 C 0.12 3.35 6.42 86.36 0.55 3.91 16 17 N -0.60 -15.80 2.97 -818.93 -2.43 -18.24 16 18 C 0.52 14.73 6.95 87.66 0.61 15.34 16 19 O -0.58 -20.80 15.37 -3.02 -0.05 -20.85 16 20 C -0.14 -3.12 1.86 -11.45 -0.02 -3.15 16 21 H 0.11 2.37 7.20 -2.39 -0.02 2.36 16 22 C -0.10 -2.25 4.75 30.72 0.15 -2.11 16 23 C -0.15 -2.38 6.14 30.68 0.19 -2.19 16 24 C 0.05 0.76 6.84 72.01 0.49 1.26 16 25 O -0.39 -7.31 10.77 -148.98 -1.60 -8.92 16 26 C 0.08 1.37 5.77 72.01 0.42 1.78 16 27 C 0.11 2.31 5.35 86.36 0.46 2.77 16 28 C -0.14 -4.19 5.34 30.67 0.16 -4.02 16 29 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 34 H 0.10 2.84 7.94 -2.39 -0.02 2.82 16 35 H 0.03 1.46 2.85 -2.39 -0.01 1.45 16 36 H 0.25 15.67 8.31 -92.71 -0.77 14.90 16 37 H 0.09 2.34 7.81 -2.39 -0.02 2.32 16 38 H 0.03 1.12 6.97 -2.39 -0.02 1.11 16 39 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 41 H 0.07 2.15 7.04 -2.39 -0.02 2.14 16 42 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.07 1.55 7.86 -2.39 -0.02 1.53 16 44 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 45 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.06 1.03 8.14 -2.39 -0.02 1.02 16 49 H 0.12 1.71 6.01 -2.39 -0.01 1.70 16 50 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.10 1.85 4.64 -2.39 -0.01 1.84 16 52 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 53 H 0.04 1.45 7.75 -2.38 -0.02 1.43 16 Total: -1.00 -77.46 397.62 2.41 -75.05 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.84 Total: 19.25 kcal Atomic # 6 Polarization: 6.65 SS G_CDS: 6.56 Total: 13.21 kcal Atomic # 7 Polarization: -102.99 SS G_CDS: -3.53 Total: -106.52 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -3.17 Total: -48.58 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 1.71 Total: 47.59 kcal Total: -77.46 2.41 -75.05 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323746434.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.294 kcal (2) G-P(sol) polarization free energy of solvation -77.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds