Wall clock time and date at job start Sat Apr 11 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99809 * 2 1 4 4 C 1.52997 * 109.47051 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47150 * 64.99530 * 4 3 2 6 6 C 1.36933 * 120.00476 * 270.00230 * 5 4 3 7 7 H 1.07993 * 120.00562 * 138.97684 * 6 5 4 8 8 C 1.38817 * 119.99706 * 318.97109 * 6 5 4 9 9 N 1.31614 * 120.00063 * 340.91038 * 8 6 5 10 10 Si 1.86804 * 119.99940 * 160.90366 * 8 6 5 11 11 H 1.48500 * 109.46837 * 60.00086 * 10 8 6 12 12 H 1.48493 * 109.46997 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47217 * 300.00339 * 10 8 6 14 14 C 1.46506 * 119.99822 * 90.00067 * 5 4 3 15 15 C 1.53043 * 109.45859 * 122.82301 * 14 5 4 16 16 C 1.53189 * 109.30880 * 181.38718 * 15 14 5 17 17 N 1.46924 * 108.77715 * 305.36510 * 16 15 14 18 18 C 1.34778 * 120.63220 * 233.59082 * 17 16 15 19 19 O 1.21281 * 120.00161 * 4.82687 * 18 17 16 20 20 C 1.50705 * 120.00221 * 184.83302 * 18 17 16 21 21 H 1.09000 * 109.51681 * 30.47229 * 20 18 17 22 22 C 1.53173 * 109.52158 * 270.34349 * 20 18 17 23 23 C 1.53175 * 109.03725 * 183.04982 * 22 20 18 24 24 C 1.53089 * 109.16311 * 56.98011 * 23 22 20 25 25 O 1.42901 * 109.41509 * 302.39343 * 24 23 22 26 26 C 1.42905 * 114.09991 * 61.15756 * 25 24 23 27 27 C 1.46920 * 118.74078 * 53.86159 * 17 16 15 28 28 C 1.53037 * 109.46214 * 242.89360 * 14 5 4 29 29 H 1.09003 * 109.47278 * 300.00488 * 1 2 3 30 30 H 1.09003 * 109.47083 * 60.00110 * 1 2 3 31 31 H 1.09005 * 109.47155 * 180.02562 * 1 2 3 32 32 H 1.08994 * 109.47472 * 59.99644 * 3 2 1 33 33 H 1.09006 * 109.46879 * 299.99428 * 3 2 1 34 34 H 1.09002 * 109.47318 * 304.99743 * 4 3 2 35 35 H 1.08999 * 109.47115 * 184.99648 * 4 3 2 36 36 H 0.97002 * 120.00118 * 179.97438 * 9 8 6 37 37 H 1.09003 * 109.45826 * 2.85448 * 14 5 4 38 38 H 1.09000 * 109.49684 * 61.43545 * 15 14 5 39 39 H 1.09002 * 109.52489 * 301.35292 * 15 14 5 40 40 H 1.09004 * 109.58394 * 185.57778 * 16 15 14 41 41 H 1.08999 * 109.71122 * 65.22542 * 16 15 14 42 42 H 1.09002 * 109.54550 * 302.91757 * 22 20 18 43 43 H 1.09004 * 109.54046 * 63.18443 * 22 20 18 44 44 H 1.08999 * 109.52321 * 176.89172 * 23 22 20 45 45 H 1.09004 * 109.51763 * 297.07771 * 23 22 20 46 46 H 1.09000 * 109.48294 * 62.37573 * 24 23 22 47 47 H 1.09001 * 109.47986 * 182.39494 * 24 23 22 48 48 H 1.08995 * 109.48317 * 178.86102 * 26 25 24 49 49 H 1.09002 * 109.47663 * 58.82164 * 26 25 24 50 50 H 1.09003 * 109.58518 * 65.92404 * 27 17 16 51 51 H 1.08999 * 109.59331 * 186.35254 * 27 17 16 52 52 H 1.09007 * 109.49660 * 298.56560 * 28 14 5 53 53 H 1.09005 * 109.49836 * 58.62776 * 28 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9766 0.5640 -1.2508 6 6 4.0978 -0.7974 -1.3344 7 1 3.7713 -1.3151 -2.2241 8 6 4.6405 -1.5122 -0.2754 9 7 5.3709 -0.8954 0.6293 10 14 4.3341 -3.3495 -0.1341 11 1 4.8667 -4.0342 -1.3394 12 1 5.0170 -3.8736 1.0758 13 1 2.8746 -3.6011 -0.0263 14 6 4.2883 1.3998 -2.4130 15 6 5.7257 1.1304 -2.8640 16 6 6.0593 2.0310 -4.0575 17 7 5.0495 1.8225 -5.1041 18 6 5.4184 1.5048 -6.3609 19 8 6.5865 1.3026 -6.6172 20 6 4.3796 1.4011 -7.4477 21 1 3.5600 2.0873 -7.2347 22 6 3.8443 -0.0327 -7.5089 23 6 2.8463 -0.1445 -8.6656 24 6 3.5360 0.2742 -9.9666 25 8 4.0376 1.6054 -9.8313 26 6 5.0102 1.7601 -8.7958 27 6 3.6300 1.9728 -4.7561 28 6 3.3233 1.0676 -3.5534 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6886 1.8465 0.8899 33 1 1.6886 1.8464 -0.8901 34 1 3.8508 0.5687 0.8427 35 1 3.9784 2.1766 0.0901 36 1 5.7498 -1.3948 1.3695 37 1 4.1832 2.4506 -2.1432 38 1 5.8251 0.0855 -3.1577 39 1 6.4110 1.3446 -2.0438 40 1 7.0453 1.7740 -4.4447 41 1 6.0506 3.0749 -3.7441 42 1 4.6710 -0.7240 -7.6726 43 1 3.3443 -0.2755 -6.5712 44 1 2.5018 -1.1750 -8.7512 45 1 1.9956 0.5105 -8.4772 46 1 4.3619 -0.4059 -10.1754 47 1 2.8187 0.2373 -10.7865 48 1 5.3547 2.7939 -8.7721 49 1 5.8553 1.0994 -8.9893 50 1 3.4254 3.0115 -4.4966 51 1 3.0125 1.6775 -5.6044 52 1 3.4453 0.0231 -3.8407 53 1 2.2982 1.2368 -3.2236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323746435.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:37 Heat of formation + Delta-G solvation = -128.160901 kcal Electronic energy + Delta-G solvation = -32155.738096 eV Core-core repulsion = 28027.218364 eV Total energy + Delta-G solvation = -4128.519732 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.66255 -39.91257 -39.03086 -38.24015 -36.52191 -34.88457 -33.68940 -32.67858 -32.07958 -31.64278 -29.73269 -27.13387 -26.68527 -26.06831 -25.49571 -24.59220 -23.80032 -22.41871 -21.79325 -21.19994 -19.87698 -18.63134 -17.97333 -17.48564 -17.25401 -16.85635 -16.72234 -16.55304 -16.50448 -16.15858 -15.71141 -15.62579 -15.46328 -15.27299 -15.08931 -14.86385 -14.56493 -14.14907 -13.94359 -13.66832 -13.58906 -13.40832 -13.30878 -13.15155 -12.88362 -12.71763 -12.60848 -12.56090 -12.35322 -12.23211 -12.18303 -12.07530 -11.94801 -11.79991 -11.55085 -11.45500 -11.35002 -11.09103 -10.77321 -10.46866 -10.37590 -10.28098 -9.62872 -8.37481 -7.69915 -5.32309 1.44053 1.47607 1.52511 1.53443 1.98398 2.57492 2.87786 3.24886 3.40746 3.47696 3.62018 3.68755 3.75632 3.88641 4.02070 4.07569 4.17909 4.22212 4.27207 4.40362 4.43275 4.45554 4.47932 4.56434 4.63798 4.65417 4.66828 4.72944 4.75340 4.76936 4.79821 4.83905 4.86170 4.87958 4.92001 4.94468 5.02088 5.04060 5.08236 5.13949 5.24670 5.27847 5.47943 5.64027 5.68067 5.77131 5.87283 6.16312 6.42750 6.55535 6.72248 7.11822 7.32694 8.00227 8.51147 9.25492 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012740 B = 0.003224 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.323847 B = 8682.805166 C = 8854.188493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.398 6.398 3 C 0.056 3.944 4 C 0.144 3.856 5 N -0.584 5.584 6 C -0.217 4.217 7 H 0.038 0.962 8 C -0.025 4.025 9 N -0.919 5.919 10 Si 0.935 3.065 11 H -0.285 1.285 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.173 3.827 15 C -0.117 4.117 16 C 0.121 3.879 17 N -0.603 5.603 18 C 0.517 3.483 19 O -0.588 6.588 20 C -0.133 4.133 21 H 0.123 0.877 22 C -0.113 4.113 23 C -0.145 4.145 24 C 0.050 3.950 25 O -0.389 6.389 26 C 0.083 3.917 27 C 0.111 3.889 28 C -0.127 4.127 29 H 0.044 0.956 30 H 0.046 0.954 31 H 0.077 0.923 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.245 0.755 37 H 0.068 0.932 38 H 0.030 0.970 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.074 0.926 44 H 0.092 0.908 45 H 0.086 0.914 46 H 0.049 0.951 47 H 0.117 0.883 48 H 0.100 0.900 49 H 0.048 0.952 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.039 0.961 53 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.918 8.659 -14.864 19.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.023 4.023 4 C 0.018 3.982 5 N -0.303 5.303 6 C -0.348 4.348 7 H 0.056 0.944 8 C -0.222 4.222 9 N -0.564 5.564 10 Si 0.765 3.235 11 H -0.211 1.211 12 H -0.224 1.224 13 H -0.210 1.210 14 C 0.066 3.934 15 C -0.157 4.157 16 C -0.003 4.003 17 N -0.334 5.334 18 C 0.307 3.693 19 O -0.469 6.469 20 C -0.154 4.154 21 H 0.141 0.859 22 C -0.151 4.151 23 C -0.183 4.183 24 C -0.026 4.026 25 O -0.308 6.308 26 C 0.006 3.994 27 C -0.011 4.011 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.096 0.904 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.054 0.946 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.106 0.894 42 H 0.072 0.928 43 H 0.092 0.908 44 H 0.111 0.889 45 H 0.104 0.896 46 H 0.068 0.932 47 H 0.135 0.865 48 H 0.119 0.881 49 H 0.066 0.934 50 H 0.113 0.887 51 H 0.122 0.878 52 H 0.058 0.942 53 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -9.177 8.479 -14.941 19.476 hybrid contribution 0.257 -1.541 1.084 1.901 sum -8.920 6.938 -13.857 17.880 Atomic orbital electron populations 1.22796 0.81701 1.02373 1.00094 1.88153 1.19471 1.28887 1.95189 1.23254 0.96589 0.83885 0.98524 1.20915 0.89769 0.96121 0.91425 1.43851 1.75732 1.02067 1.08674 1.18584 1.31616 0.83326 1.01302 0.94397 1.25567 0.96935 0.99776 0.99904 1.70054 1.34842 1.35989 1.15535 0.85862 0.77605 0.83619 0.76377 1.21123 1.22407 1.20968 1.20541 0.91354 0.93857 0.87609 1.22048 0.99327 0.98309 0.96048 1.21564 0.91846 0.99828 0.87013 1.48252 1.08599 1.67965 1.08611 1.20943 0.89441 0.75123 0.83824 1.90654 1.21479 1.52027 1.82781 1.21967 0.98221 1.01078 0.94134 0.85904 1.21562 0.99448 0.93371 1.00763 1.22161 0.98361 1.03878 0.93861 1.22843 0.98379 0.83133 0.98270 1.87931 1.58957 1.30274 1.53598 1.22280 0.89987 1.02553 0.84586 1.22111 0.79608 1.01054 0.98302 1.22265 1.00128 0.98932 0.95396 0.93714 0.93541 0.90408 0.93821 0.93634 0.92454 0.92849 0.94627 0.91416 0.95114 0.93299 0.91391 0.89415 0.92805 0.90753 0.88923 0.89557 0.93232 0.86487 0.88143 0.93383 0.88727 0.87753 0.94238 0.90722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.79 11.01 113.37 1.25 2.04 16 2 O -0.40 -16.31 10.18 -148.98 -1.52 -17.83 16 3 C 0.06 2.03 6.28 71.98 0.45 2.48 16 4 C 0.14 6.26 5.70 86.38 0.49 6.75 16 5 N -0.58 -26.46 2.32 -677.88 -1.57 -28.03 16 6 C -0.22 -11.43 7.61 84.04 0.64 -10.79 16 7 H 0.04 2.09 7.03 -2.91 -0.02 2.07 16 8 C -0.03 -1.40 4.98 84.86 0.42 -0.98 16 9 N -0.92 -53.45 11.58 21.65 0.25 -53.20 16 10 Si 0.93 46.28 29.60 68.60 2.03 48.31 16 11 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 12 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 13 H -0.28 -13.93 7.11 99.48 0.71 -13.22 16 14 C 0.17 6.28 2.59 45.02 0.12 6.40 16 15 C -0.12 -4.53 5.26 30.67 0.16 -4.37 16 16 C 0.12 3.75 6.44 86.36 0.56 4.31 16 17 N -0.60 -16.70 2.97 -818.08 -2.43 -19.13 16 18 C 0.52 15.03 6.76 87.66 0.59 15.63 16 19 O -0.59 -21.81 15.54 -3.03 -0.05 -21.86 16 20 C -0.13 -2.83 1.87 -11.45 -0.02 -2.85 16 21 H 0.12 2.06 6.45 -2.39 -0.02 2.04 16 22 C -0.11 -2.30 5.15 30.71 0.16 -2.15 16 23 C -0.15 -2.11 6.14 30.68 0.19 -1.92 16 24 C 0.05 0.77 6.84 72.01 0.49 1.26 16 25 O -0.39 -7.93 10.77 -148.98 -1.60 -9.54 16 26 C 0.08 1.82 5.77 72.01 0.42 2.23 16 27 C 0.11 2.45 6.19 86.51 0.54 2.99 16 28 C -0.13 -3.86 5.36 30.82 0.17 -3.69 16 29 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 32 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 34 H 0.06 3.02 5.69 -2.39 -0.01 3.01 16 35 H 0.05 2.10 7.90 -2.39 -0.02 2.08 16 36 H 0.24 14.09 8.31 -92.71 -0.77 13.32 16 37 H 0.07 2.19 7.78 -2.39 -0.02 2.17 16 38 H 0.03 1.40 7.65 -2.39 -0.02 1.39 16 39 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.07 2.36 7.00 -2.39 -0.02 2.34 16 41 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.57 7.61 -2.39 -0.02 1.55 16 44 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 45 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 46 H 0.05 0.78 8.14 -2.39 -0.02 0.77 16 47 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.10 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.05 1.20 7.78 -2.39 -0.02 1.18 16 50 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.10 1.80 5.05 -2.39 -0.01 1.78 16 52 H 0.04 1.43 7.19 -2.38 -0.02 1.41 16 53 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 Total: -1.00 -69.91 405.76 2.60 -67.30 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.87 Total: 16.63 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 6.61 Total: 17.34 kcal Atomic # 7 Polarization: -96.61 SS G_CDS: -3.75 Total: -100.36 kcal Atomic # 8 Polarization: -46.06 SS G_CDS: -3.17 Total: -49.22 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.31 kcal Total: -69.91 2.60 -67.30 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323746435.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.858 kcal (2) G-P(sol) polarization free energy of solvation -69.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds