Wall clock time and date at job start Sat Apr 11 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00294 * 2 1 4 4 C 1.52999 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47461 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47582 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99806 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00514 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00310 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47100 * 179.97438 * 9 8 6 11 11 H 1.08995 * 110.33060 * 305.70044 * 10 9 8 12 12 C 1.54606 * 110.36857 * 183.45733 * 10 9 8 13 13 C 1.53996 * 103.88339 * 217.16967 * 12 10 9 14 14 C 1.53960 * 104.58002 * 0.14237 * 13 12 10 15 15 O 1.44470 * 110.45983 * 68.00505 * 10 9 8 16 16 C 1.52413 * 110.24888 * 241.59473 * 13 12 10 17 17 C 1.53292 * 109.40123 * 297.41772 * 16 13 12 18 18 N 1.46926 * 108.72360 * 306.31681 * 17 16 13 19 19 C 1.36935 * 120.57777 * 234.18330 * 18 17 16 20 20 H 1.07997 * 119.99956 * 27.87960 * 19 18 17 21 21 C 1.38810 * 120.00235 * 207.88068 * 19 18 17 22 22 N 1.31623 * 119.99658 * 17.44405 * 21 19 18 23 23 Si 1.86800 * 120.00316 * 197.43978 * 21 19 18 24 24 H 1.48498 * 109.47132 * 90.00107 * 23 21 19 25 25 H 1.48505 * 109.46892 * 209.99905 * 23 21 19 26 26 H 1.48502 * 109.47091 * 329.99995 * 23 21 19 27 27 C 1.46927 * 118.84479 * 54.16049 * 18 17 16 28 28 C 1.52412 * 110.24474 * 118.67946 * 13 12 10 29 29 H 1.09000 * 109.46881 * 59.99833 * 1 2 3 30 30 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47340 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.47375 * 60.00054 * 3 2 1 33 33 H 1.09000 * 109.47119 * 299.99837 * 3 2 1 34 34 H 1.09000 * 109.47222 * 60.00263 * 4 3 2 35 35 H 1.09000 * 109.47645 * 299.99974 * 4 3 2 36 36 H 1.09009 * 109.46615 * 60.00103 * 5 4 3 37 37 H 1.09000 * 109.46920 * 300.00725 * 5 4 3 38 38 H 0.96996 * 119.99370 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.46964 * 59.99624 * 9 8 6 40 40 H 1.09000 * 109.46916 * 299.99782 * 9 8 6 41 41 H 1.09002 * 110.54491 * 335.77327 * 12 10 9 42 42 H 1.09005 * 110.54025 * 98.42341 * 12 10 9 43 43 H 1.09007 * 110.38792 * 142.41971 * 14 13 12 44 44 H 1.08997 * 110.39558 * 264.69390 * 14 13 12 45 45 H 1.08997 * 109.48227 * 57.39733 * 16 13 12 46 46 H 1.09004 * 109.47782 * 177.44023 * 16 13 12 47 47 H 1.08999 * 109.59428 * 186.54651 * 17 16 13 48 48 H 1.08995 * 109.72496 * 66.16558 * 17 16 13 49 49 H 0.96997 * 120.00338 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.59913 * 186.06625 * 27 18 17 51 51 H 1.09004 * 109.72591 * 65.67844 * 27 18 17 52 52 H 1.09002 * 109.48234 * 182.55035 * 28 13 12 53 53 H 1.08993 * 109.48123 * 302.58851 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6601 2.4632 0.0013 7 8 6.1816 1.3682 0.0021 8 7 6.4242 3.5735 0.0015 9 6 7.8845 3.4578 0.0022 10 6 8.5069 4.8554 0.0016 11 1 8.1164 5.4435 -0.8288 12 6 10.0475 4.7585 -0.0851 13 6 10.5412 5.9022 0.8202 14 6 9.2542 6.5575 1.3535 15 8 8.2487 5.5237 1.2562 16 6 11.3485 6.9074 0.0072 17 6 12.5930 6.2183 -0.5637 18 7 13.3259 5.5798 0.5381 19 6 14.6518 5.8534 0.7436 20 1 15.0594 6.8069 0.4422 21 6 15.4719 4.9051 1.3393 22 7 15.0901 3.6467 1.3952 23 14 17.1175 5.4147 2.0616 24 1 16.9372 5.7916 3.4866 25 1 18.0722 4.2812 1.9664 26 1 17.6513 6.5764 1.3061 27 6 12.6112 4.6431 1.4159 28 6 11.3665 5.3434 1.9732 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6437 0.8908 36 1 3.8359 3.1237 0.8896 37 1 3.8365 3.1226 -0.8904 38 1 6.0070 4.4492 0.0005 39 1 8.2065 2.9166 -0.8876 40 1 8.2057 2.9170 0.8924 41 1 10.3920 3.7957 0.2925 42 1 10.3829 4.9079 -1.1114 43 1 9.3856 6.8630 2.3916 44 1 8.9811 7.4145 0.7379 45 1 10.7367 7.2886 -0.8104 46 1 11.6529 7.7337 0.6497 47 1 13.2312 6.9581 -1.0469 48 1 12.2944 5.4627 -1.2903 49 1 15.6629 2.9840 1.8117 50 1 13.2613 4.3441 2.2382 51 1 12.3115 3.7624 0.8479 52 1 11.6713 6.1579 2.6304 53 1 10.7674 4.6273 2.5355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324354998.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:41 Heat of formation + Delta-G solvation = -122.476621 kcal Electronic energy + Delta-G solvation = -30041.067679 eV Core-core repulsion = 25912.794436 eV Total energy + Delta-G solvation = -4128.273243 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.35500 -39.66999 -38.27095 -36.81894 -34.90703 -33.93510 -33.35362 -31.07300 -30.71478 -29.96388 -28.37163 -26.82709 -26.36885 -25.12482 -23.84560 -22.36214 -22.22003 -21.44506 -20.85406 -20.36601 -18.23598 -17.52071 -16.81372 -16.70304 -16.63084 -16.42711 -15.73932 -15.46070 -15.29098 -15.18541 -14.85881 -14.67087 -14.08977 -13.97648 -13.66175 -13.61859 -13.23538 -13.06256 -12.86408 -12.54279 -12.42904 -12.25764 -12.09537 -12.08906 -11.88062 -11.40553 -11.33343 -11.29254 -11.25679 -10.93494 -10.86791 -10.74031 -10.47090 -10.27425 -10.21254 -10.07337 -9.97910 -9.92789 -9.63940 -9.51534 -9.30635 -9.18534 -8.45688 -6.66752 -5.78865 -3.21285 2.51178 2.90112 3.37527 3.44616 3.45658 3.46380 3.89972 4.44456 4.49336 4.57741 4.64464 4.70358 4.88701 4.89440 4.91394 5.00739 5.01815 5.02232 5.08859 5.16220 5.17069 5.22029 5.28582 5.36190 5.42232 5.53289 5.63110 5.71479 5.76520 5.79134 5.87697 5.93457 5.93822 6.04725 6.08219 6.23510 6.30142 6.31006 6.43999 6.60085 6.66014 6.74185 6.74953 6.75979 6.95083 6.98585 7.34914 7.37035 7.66903 7.79499 8.09307 8.45158 9.21444 9.85036 10.41522 11.29288 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.001767 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.924134 B =15839.954067 C =16469.904227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.137 4.137 6 C 0.510 3.490 7 O -0.539 6.539 8 N -0.726 5.726 9 C 0.126 3.874 10 C 0.063 3.937 11 H 0.069 0.931 12 C -0.135 4.135 13 C -0.076 4.076 14 C 0.053 3.947 15 O -0.373 6.373 16 C -0.120 4.120 17 C 0.145 3.855 18 N -0.590 5.590 19 C -0.254 4.254 20 H 0.065 0.935 21 C 0.003 3.997 22 N -0.901 5.901 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.171 3.829 28 C -0.126 4.126 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.402 0.598 39 H 0.082 0.918 40 H 0.078 0.922 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.060 0.940 47 H 0.052 0.948 48 H 0.019 0.981 49 H 0.254 0.746 50 H 0.087 0.913 51 H 0.019 0.981 52 H 0.055 0.945 53 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.498 2.260 -3.623 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.177 4.177 6 C 0.297 3.703 7 O -0.415 6.415 8 N -0.378 5.378 9 C 0.003 3.997 10 C 0.005 3.995 11 H 0.087 0.913 12 C -0.173 4.173 13 C -0.076 4.076 14 C -0.024 4.024 15 O -0.293 6.293 16 C -0.159 4.159 17 C 0.019 3.981 18 N -0.313 5.313 19 C -0.384 4.384 20 H 0.082 0.918 21 C -0.196 4.196 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.045 3.955 28 C -0.165 4.165 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.236 0.764 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.107 0.893 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.079 0.921 47 H 0.071 0.929 48 H 0.036 0.964 49 H 0.064 0.936 50 H 0.105 0.895 51 H 0.038 0.962 52 H 0.074 0.926 53 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -26.044 1.100 -3.414 26.290 hybrid contribution 0.624 1.060 0.288 1.263 sum -25.421 2.160 -3.126 25.703 Atomic orbital electron populations 1.22748 0.80980 1.02859 0.99931 1.87898 1.19713 1.27994 1.95402 1.22554 0.94118 0.84741 1.00142 1.21225 0.92072 0.95861 1.05150 1.21534 0.92163 0.99408 1.04608 1.20568 0.89425 0.84266 0.76083 1.90743 1.75116 1.26575 1.49102 1.45973 1.07185 1.09068 1.75540 1.21496 0.78940 0.95858 1.03422 1.23259 0.96173 0.92424 0.87621 0.91281 1.22995 0.92287 1.00753 1.01239 1.21345 0.94701 0.95070 0.96491 1.23576 0.86912 0.90160 1.01722 1.89101 1.53153 1.48638 1.38384 1.21966 0.97972 0.97608 0.98394 1.20926 0.91622 0.95074 0.90496 1.44020 1.06945 1.51024 1.29304 1.19190 0.84662 0.97509 1.36994 0.91753 1.25028 0.97683 0.94662 1.02200 1.70032 1.37936 0.99976 1.46621 0.86308 0.83645 0.77517 0.79402 1.21477 1.21778 1.20475 1.20814 0.89960 0.89915 0.94794 1.22146 0.98423 1.00157 0.95819 0.94079 0.89569 0.94063 0.93223 0.93258 0.90211 0.90159 0.88642 0.88739 0.76362 0.90029 0.90332 0.89713 0.90095 0.89332 0.92716 0.93142 0.92108 0.92925 0.96367 0.93618 0.89516 0.96248 0.92623 0.92957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.66 10.70 -35.23 -0.38 -4.03 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 C -0.11 -0.91 4.87 -26.73 -0.13 -1.04 16 5 C -0.14 -0.97 5.70 -27.89 -0.16 -1.13 16 6 C 0.51 5.72 7.83 -10.99 -0.09 5.64 16 7 O -0.54 -8.49 15.98 5.56 0.09 -8.40 16 8 N -0.73 -7.33 5.55 -60.30 -0.33 -7.66 16 9 C 0.13 1.53 5.29 -4.05 -0.02 1.51 16 10 C 0.06 0.76 3.33 -25.89 -0.09 0.67 16 11 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.13 -1.95 4.95 -25.37 -0.13 -2.07 16 13 C -0.08 -1.17 0.68 -154.09 -0.11 -1.27 16 14 C 0.05 0.70 6.73 37.66 0.25 0.95 16 15 O -0.37 -5.04 11.35 -35.23 -0.40 -5.44 16 16 C -0.12 -1.92 4.64 -26.88 -0.12 -2.05 16 17 C 0.15 2.90 6.20 -3.66 -0.02 2.87 16 18 N -0.59 -14.34 2.98 -172.19 -0.51 -14.85 16 19 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 20 H 0.06 1.72 7.89 -52.49 -0.41 1.30 16 21 C 0.00 0.08 4.90 -17.43 -0.09 0.00 16 22 N -0.90 -26.03 11.19 55.49 0.62 -25.41 16 23 Si 0.90 21.61 29.59 -169.99 -5.03 16.58 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.17 3.97 5.01 -3.65 -0.02 3.95 16 28 C -0.13 -2.34 4.63 -26.88 -0.12 -2.46 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.41 16 36 H 0.10 0.50 8.14 -51.92 -0.42 0.08 16 37 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.40 3.05 8.47 -40.82 -0.35 2.71 16 39 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.08 1.37 6.32 -51.93 -0.33 1.05 16 42 H 0.08 1.15 6.59 -51.93 -0.34 0.81 16 43 H 0.09 1.16 7.85 -51.93 -0.41 0.75 16 44 H 0.05 0.64 7.83 -51.93 -0.41 0.23 16 45 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 46 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 47 H 0.05 1.04 7.93 -51.93 -0.41 0.63 16 48 H 0.02 0.37 6.85 -51.93 -0.36 0.01 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.09 2.30 6.02 -51.93 -0.31 1.99 16 51 H 0.02 0.47 6.85 -51.93 -0.36 0.12 16 52 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 53 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 411.04 15.07 6.19 6.19 Total: -1.00 -32.78 411.04 -8.97 -41.75 By element: Atomic # 1 Polarization: 10.34 SS G_CDS: -9.57 Total: 0.77 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: 0.35 Total: 0.50 kcal Atomic # 7 Polarization: -47.70 SS G_CDS: -0.23 Total: -47.92 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.69 Total: -17.87 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.03 Total: 16.58 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.78 -8.97 -41.75 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324354998.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.724 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds