Wall clock time and date at job start Sat Apr 11 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00294 * 2 1 4 4 C 1.52999 * 109.47265 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47461 * 179.97438 * 4 3 2 6 6 C 1.50692 * 109.47582 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99806 * 0.02562 * 6 5 4 8 8 N 1.34779 * 120.00514 * 180.02562 * 6 5 4 9 9 C 1.46496 * 120.00310 * 180.02562 * 8 6 5 10 10 C 1.52996 * 109.47100 * 179.97438 * 9 8 6 11 11 H 1.08995 * 110.33060 * 305.70044 * 10 9 8 12 12 C 1.54606 * 110.36857 * 183.45733 * 10 9 8 13 13 C 1.53996 * 103.88339 * 217.16967 * 12 10 9 14 14 C 1.53960 * 104.58002 * 0.14237 * 13 12 10 15 15 O 1.44470 * 110.45983 * 68.00505 * 10 9 8 16 16 C 1.52413 * 110.24888 * 241.59473 * 13 12 10 17 17 C 1.53292 * 109.40123 * 297.41772 * 16 13 12 18 18 N 1.46926 * 108.72360 * 306.31681 * 17 16 13 19 19 C 1.36935 * 120.57777 * 234.18330 * 18 17 16 20 20 H 1.07997 * 119.99956 * 27.87960 * 19 18 17 21 21 C 1.38810 * 120.00235 * 207.88068 * 19 18 17 22 22 N 1.31623 * 119.99658 * 17.44405 * 21 19 18 23 23 Si 1.86800 * 120.00316 * 197.43978 * 21 19 18 24 24 H 1.48498 * 109.47132 * 90.00107 * 23 21 19 25 25 H 1.48505 * 109.46892 * 209.99905 * 23 21 19 26 26 H 1.48502 * 109.47091 * 329.99995 * 23 21 19 27 27 C 1.46927 * 118.84479 * 54.16049 * 18 17 16 28 28 C 1.52412 * 110.24474 * 118.67946 * 13 12 10 29 29 H 1.09000 * 109.46881 * 59.99833 * 1 2 3 30 30 H 1.09001 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47340 * 299.99994 * 1 2 3 32 32 H 1.09006 * 109.47375 * 60.00054 * 3 2 1 33 33 H 1.09000 * 109.47119 * 299.99837 * 3 2 1 34 34 H 1.09000 * 109.47222 * 60.00263 * 4 3 2 35 35 H 1.09000 * 109.47645 * 299.99974 * 4 3 2 36 36 H 1.09009 * 109.46615 * 60.00103 * 5 4 3 37 37 H 1.09000 * 109.46920 * 300.00725 * 5 4 3 38 38 H 0.96996 * 119.99370 * 359.97438 * 8 6 5 39 39 H 1.09006 * 109.46964 * 59.99624 * 9 8 6 40 40 H 1.09000 * 109.46916 * 299.99782 * 9 8 6 41 41 H 1.09002 * 110.54491 * 335.77327 * 12 10 9 42 42 H 1.09005 * 110.54025 * 98.42341 * 12 10 9 43 43 H 1.09007 * 110.38792 * 142.41971 * 14 13 12 44 44 H 1.08997 * 110.39558 * 264.69390 * 14 13 12 45 45 H 1.08997 * 109.48227 * 57.39733 * 16 13 12 46 46 H 1.09004 * 109.47782 * 177.44023 * 16 13 12 47 47 H 1.08999 * 109.59428 * 186.54651 * 17 16 13 48 48 H 1.08995 * 109.72496 * 66.16558 * 17 16 13 49 49 H 0.96997 * 120.00338 * 180.02562 * 22 21 19 50 50 H 1.09006 * 109.59913 * 186.06625 * 27 18 17 51 51 H 1.09004 * 109.72591 * 65.67844 * 27 18 17 52 52 H 1.09002 * 109.48234 * 182.55035 * 28 13 12 53 53 H 1.08993 * 109.48123 * 302.58851 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 0.0006 5 6 4.1579 2.5822 0.0000 6 6 5.6601 2.4632 0.0013 7 8 6.1816 1.3682 0.0021 8 7 6.4242 3.5735 0.0015 9 6 7.8845 3.4578 0.0022 10 6 8.5069 4.8554 0.0016 11 1 8.1164 5.4435 -0.8288 12 6 10.0475 4.7585 -0.0851 13 6 10.5412 5.9022 0.8202 14 6 9.2542 6.5575 1.3535 15 8 8.2487 5.5237 1.2562 16 6 11.3485 6.9074 0.0072 17 6 12.5930 6.2183 -0.5637 18 7 13.3259 5.5798 0.5381 19 6 14.6518 5.8534 0.7436 20 1 15.0594 6.8069 0.4422 21 6 15.4719 4.9051 1.3393 22 7 15.0901 3.6467 1.3952 23 14 17.1175 5.4147 2.0616 24 1 16.9372 5.7916 3.4866 25 1 18.0722 4.2812 1.9664 26 1 17.6513 6.5764 1.3061 27 6 12.6112 4.6431 1.4159 28 6 11.3665 5.3434 1.9732 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6887 1.8463 -0.8900 34 1 3.8574 0.6435 -0.8891 35 1 3.8568 0.6437 0.8908 36 1 3.8359 3.1237 0.8896 37 1 3.8365 3.1226 -0.8904 38 1 6.0070 4.4492 0.0005 39 1 8.2065 2.9166 -0.8876 40 1 8.2057 2.9170 0.8924 41 1 10.3920 3.7957 0.2925 42 1 10.3829 4.9079 -1.1114 43 1 9.3856 6.8630 2.3916 44 1 8.9811 7.4145 0.7379 45 1 10.7367 7.2886 -0.8104 46 1 11.6529 7.7337 0.6497 47 1 13.2312 6.9581 -1.0469 48 1 12.2944 5.4627 -1.2903 49 1 15.6629 2.9840 1.8117 50 1 13.2613 4.3441 2.2382 51 1 12.3115 3.7624 0.8479 52 1 11.6713 6.1579 2.6304 53 1 10.7674 4.6273 2.5355 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324354998.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:40 Heat of formation + Delta-G solvation = -145.641422 kcal Electronic energy + Delta-G solvation = -30042.072180 eV Core-core repulsion = 25912.794436 eV Total energy + Delta-G solvation = -4129.277745 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.48760 -40.64790 -38.85690 -38.29218 -35.93814 -35.01417 -34.62372 -32.71468 -31.87856 -31.59919 -29.04281 -28.35247 -27.13246 -25.95816 -25.52690 -23.93424 -22.92775 -22.66193 -22.26141 -21.21257 -19.76167 -18.54828 -18.24709 -17.61329 -17.31567 -17.14029 -16.89987 -16.63935 -16.49739 -16.15040 -15.91973 -15.67052 -15.55857 -15.39448 -14.83773 -14.74597 -14.63938 -14.49200 -14.00170 -13.79597 -13.45602 -13.20445 -13.05387 -12.99547 -12.94165 -12.84883 -12.61650 -12.59643 -12.40097 -12.17139 -12.11761 -11.96049 -11.90271 -11.87602 -11.83712 -11.52566 -11.11415 -11.03839 -10.88087 -10.61377 -10.59065 -10.48978 -10.12568 -8.65807 -7.87023 -5.31979 1.45172 1.46753 1.55334 1.65576 2.12215 2.50736 2.85053 2.94853 3.26527 3.54722 3.71371 3.73466 3.79431 3.91942 4.00416 4.04383 4.13348 4.17565 4.25758 4.37084 4.44422 4.49504 4.51295 4.53316 4.56076 4.57271 4.61131 4.69981 4.72429 4.74223 4.77840 4.84709 4.87612 4.88178 4.93245 5.03338 5.06910 5.13248 5.24759 5.25327 5.29677 5.34798 5.42458 5.43424 5.52596 5.64941 5.78584 5.91057 6.28060 6.39385 6.57313 7.15528 7.28260 7.88702 8.39330 9.18561 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.025473 B = 0.001767 C = 0.001700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.924134 B =15839.954067 C =16469.904227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.062 3.938 4 C -0.104 4.104 5 C -0.124 4.124 6 C 0.504 3.496 7 O -0.594 6.594 8 N -0.713 5.713 9 C 0.129 3.871 10 C 0.079 3.921 11 H 0.104 0.896 12 C -0.136 4.136 13 C -0.076 4.076 14 C 0.061 3.939 15 O -0.381 6.381 16 C -0.107 4.107 17 C 0.138 3.862 18 N -0.608 5.608 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.052 4.052 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.287 1.287 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.180 3.820 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.056 0.944 35 H 0.052 0.948 36 H 0.123 0.877 37 H 0.129 0.871 38 H 0.419 0.581 39 H 0.077 0.923 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.086 0.914 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.090 0.910 46 H 0.059 0.941 47 H 0.051 0.949 48 H 0.017 0.983 49 H 0.248 0.752 50 H 0.045 0.955 51 H -0.004 1.004 52 H 0.051 0.949 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.273 5.449 -4.417 30.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.014 4.014 4 C -0.142 4.142 5 C -0.163 4.163 6 C 0.292 3.708 7 O -0.475 6.475 8 N -0.365 5.365 9 C 0.004 3.996 10 C 0.021 3.979 11 H 0.122 0.878 12 C -0.174 4.174 13 C -0.077 4.077 14 C -0.015 4.015 15 O -0.301 6.301 16 C -0.146 4.146 17 C 0.013 3.987 18 N -0.332 5.332 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.247 4.247 22 N -0.582 5.582 23 Si 0.793 3.207 24 H -0.214 1.214 25 H -0.224 1.224 26 H -0.191 1.191 27 C 0.054 3.946 28 C -0.152 4.152 29 H 0.072 0.928 30 H 0.109 0.891 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.256 0.744 39 H 0.095 0.905 40 H 0.067 0.933 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.109 0.891 44 H 0.104 0.896 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.035 0.965 49 H 0.057 0.943 50 H 0.064 0.936 51 H 0.014 0.986 52 H 0.070 0.930 53 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -28.862 4.360 -4.221 29.493 hybrid contribution 1.491 0.025 0.493 1.571 sum -27.371 4.385 -3.728 27.970 Atomic orbital electron populations 1.22917 0.79345 1.03654 1.01101 1.87851 1.21667 1.29488 1.95683 1.22608 0.92517 0.84332 1.01928 1.21174 0.93768 0.96553 1.02748 1.21537 0.88423 0.98852 1.07524 1.21387 0.91252 0.83471 0.74653 1.90727 1.76397 1.28717 1.51640 1.45847 1.06171 1.09815 1.74683 1.21302 0.80435 0.95931 1.01890 1.23201 0.94065 0.92428 0.88203 0.87831 1.22942 0.94461 0.98965 1.01062 1.21307 0.95550 0.95492 0.95312 1.23532 0.84997 0.90525 1.02440 1.89104 1.52917 1.48934 1.39135 1.21826 0.96352 0.96946 0.99434 1.21134 0.93063 0.94945 0.89524 1.44277 1.06656 1.51295 1.30947 1.19543 0.86027 0.97400 1.36162 0.91507 1.25776 1.01108 0.94647 1.03197 1.70196 1.39107 1.00948 1.47952 0.85308 0.79722 0.77148 0.78547 1.21378 1.22406 1.19113 1.20550 0.91023 0.89839 0.93169 1.21925 0.96705 0.99585 0.97004 0.92780 0.89147 0.92927 0.91490 0.91185 0.92489 0.92874 0.85861 0.85275 0.74373 0.90480 0.93293 0.92609 0.89550 0.89111 0.89603 0.89170 0.92232 0.93003 0.96477 0.94297 0.93635 0.98559 0.93021 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.65 10.70 -148.98 -1.59 -9.25 16 3 C 0.06 0.77 5.94 71.98 0.43 1.20 16 4 C -0.10 -1.76 4.87 30.59 0.15 -1.61 16 5 C -0.12 -1.43 5.70 29.85 0.17 -1.26 16 6 C 0.50 10.80 7.83 87.65 0.69 11.49 16 7 O -0.59 -19.40 15.98 -3.04 -0.05 -19.44 16 8 N -0.71 -12.92 5.55 -463.07 -2.57 -15.49 16 9 C 0.13 3.03 5.29 86.38 0.46 3.48 16 10 C 0.08 1.67 3.33 31.14 0.10 1.77 16 11 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 12 C -0.14 -3.77 4.95 31.48 0.16 -3.61 16 13 C -0.08 -2.20 0.68 -51.91 -0.04 -2.24 16 14 C 0.06 1.39 6.73 72.31 0.49 1.87 16 15 O -0.38 -9.02 11.35 -148.98 -1.69 -10.71 16 16 C -0.11 -3.10 4.64 30.50 0.14 -2.96 16 17 C 0.14 5.39 6.20 86.40 0.54 5.93 16 18 N -0.61 -30.08 2.98 -698.69 -2.09 -32.16 16 19 C -0.26 -14.35 9.58 84.03 0.80 -13.54 16 20 H 0.07 3.57 7.89 -2.91 -0.02 3.54 16 21 C -0.05 -2.94 4.90 84.86 0.42 -2.52 16 22 N -0.94 -56.44 11.19 21.65 0.24 -56.20 16 23 Si 0.96 45.37 29.59 68.60 2.03 47.40 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 C 0.18 8.73 5.01 86.40 0.43 9.16 16 28 C -0.11 -4.22 4.63 30.50 0.14 -4.08 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.06 1.19 8.10 -2.39 -0.02 1.17 16 35 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 36 H 0.12 0.81 8.14 -2.38 -0.02 0.79 16 37 H 0.13 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.42 4.76 8.47 -92.71 -0.79 3.98 16 39 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.06 1.87 6.32 -2.39 -0.02 1.86 16 42 H 0.09 2.29 6.59 -2.38 -0.02 2.28 16 43 H 0.09 2.05 7.85 -2.38 -0.02 2.03 16 44 H 0.09 1.49 7.83 -2.39 -0.02 1.48 16 45 H 0.09 1.97 8.12 -2.39 -0.02 1.95 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.99 7.93 -2.39 -0.02 1.98 16 48 H 0.02 0.68 6.85 -2.39 -0.02 0.66 16 49 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 50 H 0.05 2.56 6.02 -2.38 -0.01 2.55 16 51 H 0.00 -0.19 6.85 -2.38 -0.02 -0.20 16 52 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 53 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -76.37 411.04 0.70 -75.67 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.10 Total: 15.58 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.32 Total: 4.61 kcal Atomic # 7 Polarization: -99.44 SS G_CDS: -4.41 Total: -103.85 kcal Atomic # 8 Polarization: -36.07 SS G_CDS: -3.33 Total: -39.40 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -76.37 0.70 -75.67 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324354998.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.976 kcal (2) G-P(sol) polarization free energy of solvation -76.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds