Wall clock time and date at job start Sat Apr 11 2020 06:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42901 * 113.99691 * 2 1 4 4 C 1.53005 * 109.47109 * 180.02562 * 3 2 1 5 5 C 1.52996 * 109.46871 * 179.97438 * 4 3 2 6 6 C 1.50705 * 109.46675 * 179.97438 * 5 4 3 7 7 O 1.21276 * 120.00226 * 359.97438 * 6 5 4 8 8 N 1.34776 * 119.99719 * 179.97438 * 6 5 4 9 9 C 1.46507 * 120.00009 * 179.97438 * 8 6 5 10 10 C 1.52993 * 109.47092 * 179.97438 * 9 8 6 11 11 H 1.09000 * 110.32697 * 59.30224 * 10 9 8 12 12 C 1.54611 * 110.36761 * 181.53905 * 10 9 8 13 13 C 1.54158 * 103.80210 * 142.64080 * 12 10 9 14 14 C 1.53972 * 104.59481 * 0.02562 * 13 12 10 15 15 O 1.44466 * 110.37503 * 297.06062 * 10 9 8 16 16 C 1.52414 * 110.20685 * 118.51004 * 13 12 10 17 17 C 1.53292 * 109.39352 * 182.46707 * 16 13 12 18 18 N 1.46924 * 108.72427 * 306.32237 * 17 16 13 19 19 C 1.36942 * 120.56992 * 234.16719 * 18 17 16 20 20 H 1.07997 * 119.99906 * 27.88195 * 19 18 17 21 21 C 1.38808 * 119.99539 * 207.87776 * 19 18 17 22 22 N 1.31618 * 120.00731 * 17.44030 * 21 19 18 23 23 Si 1.86807 * 119.99930 * 197.43774 * 21 19 18 24 24 H 1.48500 * 109.47046 * 89.99987 * 23 21 19 25 25 H 1.48504 * 109.47063 * 210.00381 * 23 21 19 26 26 H 1.48500 * 109.46988 * 330.00287 * 23 21 19 27 27 C 1.46936 * 118.86062 * 54.13856 * 18 17 16 28 28 C 1.52412 * 110.34457 * 241.45744 * 13 12 10 29 29 H 1.08996 * 109.47294 * 300.00250 * 1 2 3 30 30 H 1.09001 * 109.47191 * 60.00360 * 1 2 3 31 31 H 1.09005 * 109.47201 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47496 * 59.99705 * 3 2 1 33 33 H 1.09005 * 109.46920 * 299.99608 * 3 2 1 34 34 H 1.08991 * 109.47522 * 59.99305 * 4 3 2 35 35 H 1.09005 * 109.46570 * 299.99406 * 4 3 2 36 36 H 1.09000 * 109.47270 * 59.99850 * 5 4 3 37 37 H 1.09000 * 109.47318 * 299.99527 * 5 4 3 38 38 H 0.96998 * 120.00444 * 0.02562 * 8 6 5 39 39 H 1.09000 * 109.46826 * 60.00253 * 9 8 6 40 40 H 1.09000 * 109.47139 * 300.00312 * 9 8 6 41 41 H 1.09005 * 110.54651 * 261.31440 * 12 10 9 42 42 H 1.08994 * 110.54532 * 24.11346 * 12 10 9 43 43 H 1.09004 * 110.39503 * 217.46878 * 14 13 12 44 44 H 1.09008 * 110.49242 * 95.12759 * 14 13 12 45 45 H 1.09000 * 109.48554 * 302.44338 * 16 13 12 46 46 H 1.09002 * 109.48010 * 62.49164 * 16 13 12 47 47 H 1.08999 * 109.59800 * 186.55277 * 17 16 13 48 48 H 1.09006 * 109.72491 * 66.16389 * 17 16 13 49 49 H 0.97000 * 120.00731 * 179.97438 * 22 21 19 50 50 H 1.08996 * 109.59720 * 186.08103 * 27 18 17 51 51 H 1.09006 * 109.72118 * 65.69604 * 27 18 17 52 52 H 1.08992 * 109.48557 * 297.57553 * 28 13 12 53 53 H 1.09004 * 109.48133 * 57.62658 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 -0.0013 6 6 5.6599 2.4635 -0.0013 7 8 6.1815 1.3687 -0.0004 8 7 6.4238 3.5739 -0.0023 9 6 7.8843 3.4583 -0.0018 10 6 8.5065 4.8560 -0.0038 11 1 8.1835 5.4156 0.8741 12 6 10.0490 4.7584 -0.0422 13 6 10.4693 5.9311 -0.9502 14 6 9.1441 6.6021 -1.3557 15 8 8.1485 5.5642 -1.2111 16 6 11.3411 6.9114 -0.1743 17 6 11.6970 8.0994 -1.0753 18 7 12.2923 7.5877 -2.3173 19 6 13.5168 8.0338 -2.7381 20 1 14.2414 8.3824 -2.0172 21 6 13.8264 8.0377 -4.0912 22 7 12.8658 7.9491 -4.9865 23 14 15.6068 8.1688 -4.6415 24 1 16.1877 6.8078 -4.7664 25 1 15.6691 8.8562 -5.9564 26 1 16.3787 8.9464 -3.6392 27 6 11.5516 6.5887 -3.0998 28 6 11.1970 5.4113 -2.1844 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.6885 1.8464 0.8899 33 1 1.6885 1.8464 -0.8901 34 1 3.8567 0.6440 -0.8907 35 1 3.8573 0.6438 0.8892 36 1 3.8363 3.1237 0.8887 37 1 3.8356 3.1232 -0.8913 38 1 6.0066 4.4496 -0.0027 39 1 8.2062 2.9165 -0.8911 40 1 8.2057 2.9184 0.8889 41 1 10.4650 4.8786 0.9582 42 1 10.3615 3.8084 -0.4758 43 1 9.1912 6.9414 -2.3905 44 1 8.9210 7.4380 -0.6926 45 1 10.7971 7.2685 0.7001 46 1 12.2551 6.4108 0.1452 47 1 12.4131 8.7436 -0.5651 48 1 10.7961 8.6671 -1.3087 49 1 13.0822 7.9522 -5.9321 50 1 12.1717 6.2370 -3.9242 51 1 10.6377 7.0337 -3.4936 52 1 12.1100 4.8999 -1.8796 53 1 10.5518 4.7153 -2.7206 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324355003.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:43 Heat of formation + Delta-G solvation = -145.319025 kcal Electronic energy + Delta-G solvation = -29944.496336 eV Core-core repulsion = 25815.232572 eV Total energy + Delta-G solvation = -4129.263764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.48078 -40.64212 -38.85909 -38.28050 -35.87617 -35.01182 -34.61960 -32.92758 -31.87167 -31.47361 -29.13108 -28.16237 -26.90081 -26.13291 -25.63371 -23.96004 -23.15342 -22.60588 -22.06577 -21.08923 -19.90481 -18.57441 -18.24858 -17.46281 -17.32583 -17.11233 -17.00061 -16.63134 -16.54492 -16.07703 -16.06067 -15.72703 -15.50529 -15.22732 -14.82525 -14.73330 -14.63867 -14.44229 -13.92046 -13.72386 -13.53861 -13.32281 -13.04783 -13.02628 -12.93652 -12.78398 -12.61843 -12.58579 -12.44698 -12.37175 -12.07490 -11.96433 -11.87672 -11.87449 -11.80233 -11.50282 -11.07545 -11.05667 -10.84809 -10.62130 -10.59605 -10.49948 -10.09875 -8.65694 -7.87025 -5.31794 1.45481 1.47467 1.55599 1.66013 2.13772 2.50906 2.85235 2.96574 3.26714 3.54751 3.70702 3.73958 3.79406 3.90317 4.00286 4.06185 4.14879 4.17895 4.26158 4.35145 4.41860 4.49044 4.52207 4.53354 4.56181 4.58522 4.61310 4.68280 4.71429 4.74682 4.78190 4.82759 4.85636 4.87727 4.97046 5.03667 5.05628 5.13246 5.22475 5.24930 5.27778 5.36027 5.41921 5.45148 5.53375 5.65279 5.78177 5.91922 6.27133 6.39708 6.57240 7.15673 7.27448 7.88413 8.38786 9.18630 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.028588 B = 0.001686 C = 0.001653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.192430 B =16602.458346 C =16930.190618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.426 6.426 3 C 0.061 3.939 4 C -0.102 4.102 5 C -0.127 4.127 6 C 0.506 3.494 7 O -0.592 6.592 8 N -0.716 5.716 9 C 0.130 3.870 10 C 0.070 3.930 11 H 0.100 0.900 12 C -0.134 4.134 13 C -0.075 4.075 14 C 0.061 3.939 15 O -0.384 6.384 16 C -0.107 4.107 17 C 0.137 3.863 18 N -0.609 5.609 19 C -0.261 4.261 20 H 0.067 0.933 21 C -0.050 4.050 22 N -0.935 5.935 23 Si 0.963 3.037 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.267 1.267 27 C 0.178 3.822 28 C -0.113 4.113 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.091 0.909 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.128 0.872 37 H 0.119 0.881 38 H 0.417 0.583 39 H 0.051 0.949 40 H 0.087 0.913 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.075 0.925 45 H 0.090 0.910 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.019 0.981 49 H 0.249 0.751 50 H 0.047 0.953 51 H 0.001 0.999 52 H 0.049 0.951 53 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.175 -8.114 15.459 28.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.346 6.346 3 C -0.015 4.015 4 C -0.141 4.141 5 C -0.166 4.166 6 C 0.294 3.706 7 O -0.472 6.472 8 N -0.368 5.368 9 C 0.005 3.995 10 C 0.012 3.988 11 H 0.118 0.882 12 C -0.172 4.172 13 C -0.076 4.076 14 C -0.016 4.016 15 O -0.304 6.304 16 C -0.146 4.146 17 C 0.012 3.988 18 N -0.332 5.332 19 C -0.392 4.392 20 H 0.084 0.916 21 C -0.246 4.246 22 N -0.581 5.581 23 Si 0.792 3.208 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.192 1.192 27 C 0.052 3.948 28 C -0.152 4.152 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.137 0.863 38 H 0.254 0.746 39 H 0.069 0.931 40 H 0.105 0.895 41 H 0.120 0.880 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.093 0.907 45 H 0.108 0.892 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.037 0.963 49 H 0.058 0.942 50 H 0.065 0.935 51 H 0.019 0.981 52 H 0.068 0.932 53 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.847 -9.054 15.164 28.093 hybrid contribution 1.086 0.706 -1.058 1.672 sum -20.761 -8.348 14.107 26.452 Atomic orbital electron populations 1.22917 0.79374 1.03678 1.01063 1.87848 1.21631 1.29414 1.95678 1.22615 0.92690 0.84342 1.01837 1.21159 0.93605 0.96449 1.02847 1.21545 0.88847 0.98904 1.07330 1.21283 0.91097 0.83493 0.74682 1.90707 1.76306 1.28508 1.51722 1.45885 1.06554 1.09747 1.74581 1.21382 0.80209 0.95572 1.02298 1.23298 0.94136 0.92106 0.89216 0.88208 1.23017 0.94524 0.98403 1.01233 1.21315 0.95362 0.95639 0.95237 1.23465 0.85954 0.90375 1.01762 1.89119 1.50272 1.47011 1.43958 1.21877 0.99104 0.96024 0.97561 1.21135 0.95949 0.94650 0.87079 1.44283 1.19155 1.45375 1.24413 1.19534 0.91259 1.37696 0.90691 0.91572 1.25748 1.00872 1.01500 0.96451 1.70180 1.31979 1.55706 1.00227 0.85326 0.80805 0.77478 0.77216 1.21507 1.22275 1.19182 1.20605 0.93447 0.87870 0.92883 1.21913 0.98805 0.97903 0.96605 0.92787 0.93043 0.89058 0.91208 0.91730 0.92836 0.92200 0.85391 0.86279 0.74594 0.93064 0.89452 0.87952 0.90908 0.91082 0.90658 0.89177 0.92344 0.92886 0.96338 0.94234 0.93492 0.98105 0.93205 0.92730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.43 -7.50 10.70 -148.98 -1.59 -9.09 16 3 C 0.06 0.76 5.94 71.98 0.43 1.19 16 4 C -0.10 -1.67 4.87 30.59 0.15 -1.52 16 5 C -0.13 -1.45 5.70 29.85 0.17 -1.28 16 6 C 0.51 10.28 7.83 87.66 0.69 10.96 16 7 O -0.59 -17.92 15.98 -3.02 -0.05 -17.97 16 8 N -0.72 -12.40 5.50 -463.06 -2.55 -14.94 16 9 C 0.13 2.63 5.30 86.38 0.46 3.09 16 10 C 0.07 1.37 3.35 31.14 0.10 1.47 16 11 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 12 C -0.13 -2.93 5.91 31.53 0.19 -2.75 16 13 C -0.08 -2.18 0.69 -51.85 -0.04 -2.21 16 14 C 0.06 1.74 5.63 72.31 0.41 2.15 16 15 O -0.38 -10.01 11.27 -148.98 -1.68 -11.69 16 16 C -0.11 -3.11 4.55 30.50 0.14 -2.97 16 17 C 0.14 5.28 6.22 86.40 0.54 5.82 16 18 N -0.61 -29.82 2.98 -698.68 -2.09 -31.91 16 19 C -0.26 -14.28 9.58 84.03 0.80 -13.47 16 20 H 0.07 3.52 7.89 -2.91 -0.02 3.49 16 21 C -0.05 -2.82 4.90 84.86 0.42 -2.40 16 22 N -0.93 -55.60 11.19 21.65 0.24 -55.36 16 23 Si 0.96 45.04 29.59 68.60 2.03 47.07 16 24 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 25 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 26 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 27 C 0.18 8.51 5.01 86.40 0.43 8.94 16 28 C -0.11 -4.22 4.70 30.50 0.14 -4.08 16 29 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 34 H 0.05 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.06 1.18 8.10 -2.38 -0.02 1.16 16 36 H 0.13 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.42 5.08 8.45 -92.71 -0.78 4.29 16 39 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.10 1.79 7.72 -2.38 -0.02 1.77 16 42 H 0.07 1.70 7.45 -2.39 -0.02 1.68 16 43 H 0.07 2.50 5.99 -2.39 -0.01 2.48 16 44 H 0.08 1.87 7.71 -2.38 -0.02 1.86 16 45 H 0.09 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 2.02 7.93 -2.39 -0.02 2.00 16 48 H 0.02 0.72 7.46 -2.38 -0.02 0.70 16 49 H 0.25 14.39 8.31 -92.71 -0.77 13.62 16 50 H 0.05 2.61 6.02 -2.39 -0.01 2.60 16 51 H 0.00 0.05 6.44 -2.38 -0.02 0.04 16 52 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 53 H 0.05 1.98 8.14 -2.38 -0.02 1.96 16 Total: -1.00 -74.27 411.27 0.69 -73.58 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.10 Total: 15.86 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.27 Total: 4.44 kcal Atomic # 7 Polarization: -97.82 SS G_CDS: -4.39 Total: -102.20 kcal Atomic # 8 Polarization: -35.42 SS G_CDS: -3.32 Total: -38.75 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -74.27 0.69 -73.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324355003.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.740 kcal (2) G-P(sol) polarization free energy of solvation -74.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds