Wall clock time and date at job start Sat Apr 11 2020 06:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42895 * 114.00013 * 2 1 4 4 H 1.09002 * 109.47023 * 9.78944 * 3 2 1 5 5 C 1.50705 * 109.46835 * 129.78695 * 3 2 1 6 6 O 1.21283 * 120.00360 * 3.82634 * 5 3 2 7 7 N 1.34781 * 119.99857 * 183.82882 * 5 3 2 8 8 C 1.46497 * 120.00227 * 174.65153 * 7 5 3 9 9 C 1.52996 * 109.47488 * 179.97438 * 8 7 5 10 10 O 1.42910 * 110.91271 * 297.55347 * 9 8 7 11 11 C 1.55153 * 111.00576 * 173.65011 * 9 8 7 12 12 C 1.54326 * 102.94371 * 206.42306 * 11 9 8 13 13 N 1.47027 * 107.26921 * 22.18738 * 12 11 9 14 14 C 1.36934 * 125.64507 * 181.09010 * 13 12 11 15 15 H 1.08002 * 119.99560 * 179.97438 * 14 13 12 16 16 C 1.38806 * 120.00116 * 359.97013 * 14 13 12 17 17 N 1.31623 * 120.00331 * 359.97438 * 16 14 13 18 18 Si 1.86810 * 119.99793 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47029 * 59.99821 * 18 16 14 20 20 H 1.48497 * 109.46860 * 179.97438 * 18 16 14 21 21 H 1.48498 * 109.47103 * 299.99564 * 18 16 14 22 22 C 1.47427 * 108.70247 * 1.06632 * 13 12 11 23 23 C 1.52999 * 109.47628 * 249.78455 * 3 2 1 24 24 C 1.53002 * 109.46568 * 61.69014 * 23 3 2 25 25 C 1.53004 * 109.46892 * 180.02562 * 24 23 3 26 26 C 1.52999 * 109.47061 * 60.00116 * 25 24 23 27 27 C 1.52990 * 109.46936 * 299.99842 * 26 25 24 28 28 C 1.52998 * 109.47299 * 60.00449 * 27 26 25 29 29 H 1.08998 * 109.46911 * 184.70173 * 1 2 3 30 30 H 1.09003 * 109.46624 * 304.69390 * 1 2 3 31 31 H 1.08998 * 109.47444 * 64.69927 * 1 2 3 32 32 H 0.97005 * 119.99985 * 354.65283 * 7 5 3 33 33 H 1.08999 * 109.47130 * 59.99490 * 8 7 5 34 34 H 1.09001 * 109.47048 * 299.99907 * 8 7 5 35 35 H 0.96691 * 113.99803 * 62.44675 * 10 9 8 36 36 H 1.08997 * 110.72160 * 324.78574 * 11 9 8 37 37 H 1.09000 * 110.72068 * 88.05883 * 11 9 8 38 38 H 1.09010 * 109.87986 * 262.77807 * 12 11 9 39 39 H 1.08991 * 109.88478 * 141.61389 * 12 11 9 40 40 H 0.97001 * 119.99736 * 179.97438 * 17 16 14 41 41 H 1.08999 * 110.36026 * 217.02963 * 22 13 12 42 42 H 1.08995 * 110.36755 * 94.70648 * 22 13 12 43 43 H 1.08997 * 109.47315 * 181.68572 * 23 3 2 44 44 H 1.09001 * 109.47552 * 300.00183 * 24 23 3 45 45 H 1.09008 * 109.47394 * 60.00295 * 24 23 3 46 46 H 1.08997 * 109.47068 * 299.99605 * 25 24 23 47 47 H 1.09005 * 109.47051 * 180.02562 * 25 24 23 48 48 H 1.08998 * 109.46882 * 179.97438 * 26 25 24 49 49 H 1.09001 * 109.46967 * 60.00175 * 26 25 24 50 50 H 1.09001 * 109.47564 * 299.99967 * 27 26 25 51 51 H 1.09008 * 109.47157 * 179.97438 * 27 26 25 52 52 H 1.09002 * 109.47610 * 179.97438 * 28 27 26 53 53 H 1.08996 * 109.47533 * 59.99643 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.2328 2.0492 0.1747 5 6 3.0452 1.3944 1.0918 6 8 3.3132 0.4148 1.7548 7 7 3.6730 2.5628 1.3317 8 6 4.5918 2.6812 2.4665 9 6 5.1656 4.0987 2.5124 10 8 5.9260 4.3796 1.3355 11 6 6.0195 4.3119 3.7902 12 6 5.9221 5.8347 4.0209 13 7 4.7107 6.3039 3.3324 14 6 4.2760 7.6012 3.2772 15 1 3.3694 7.8447 2.7431 16 6 5.0004 8.6034 3.9078 17 7 6.1050 8.3066 4.5592 18 14 4.4077 10.3733 3.8319 19 1 3.0569 10.4695 4.4411 20 1 5.3505 11.2435 4.5796 21 1 4.3443 10.8138 2.4152 22 6 4.0420 5.1464 2.7108 23 6 2.6731 1.5687 -1.3536 24 6 1.6149 1.5199 -2.4576 25 6 2.2778 1.7826 -3.8113 26 6 3.3397 0.7132 -4.0752 27 6 4.3978 0.7621 -2.9712 28 6 3.7350 0.4993 -1.6175 29 1 -0.3633 -1.0242 0.0842 30 1 -0.3633 0.5850 0.8450 31 1 -0.3634 0.4392 -0.9290 32 1 3.5163 3.3253 0.7528 33 1 5.4047 1.9640 2.3522 34 1 4.0541 2.4763 3.3923 35 1 5.4095 4.3547 0.5184 36 1 5.5952 3.7663 4.6331 37 1 7.0534 4.0134 3.6174 38 1 6.8000 6.3295 3.6051 39 1 5.8467 6.0440 5.0879 40 1 6.6114 9.0071 4.9996 41 1 3.6119 5.4280 1.7496 42 1 3.2699 4.7540 3.3724 43 1 3.1422 2.5525 -1.3432 44 1 1.1456 0.5361 -2.4680 45 1 0.8580 2.2815 -2.2694 46 1 2.7472 2.7662 -3.8012 47 1 1.5238 1.7483 -4.5978 48 1 3.8116 0.9001 -5.0398 49 1 2.8702 -0.2704 -4.0853 50 1 4.8673 1.7457 -2.9611 51 1 5.1542 -0.0001 -3.1589 52 1 4.4889 0.5337 -0.8310 53 1 3.2655 -0.4843 -1.6276 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325169931.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:46 Heat of formation + Delta-G solvation = -147.410003 kcal Electronic energy + Delta-G solvation = -31681.691932 eV Core-core repulsion = 27552.337496 eV Total energy + Delta-G solvation = -4129.354436 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.54332 -40.29187 -39.17785 -37.92071 -36.73604 -35.34419 -34.02057 -32.95209 -31.62596 -31.37448 -29.89055 -28.49592 -27.49375 -26.56031 -25.03235 -23.53934 -22.92698 -22.20248 -21.43281 -21.17891 -20.58992 -19.01001 -18.72404 -17.83364 -17.33903 -17.21891 -16.70538 -16.53467 -16.09720 -15.85304 -15.78175 -15.59349 -15.31321 -15.05312 -14.94466 -14.81671 -14.41120 -14.31283 -13.98448 -13.88210 -13.65170 -13.25320 -13.17277 -13.01919 -12.92653 -12.73822 -12.72459 -12.43442 -12.34951 -12.10300 -12.03909 -11.98627 -11.89087 -11.78735 -11.70159 -11.43747 -11.25490 -11.19127 -10.92656 -10.82213 -10.66977 -10.29269 -10.14346 -8.88183 -7.83446 -5.19151 1.46947 1.50378 1.54753 1.56579 1.87260 2.50295 2.96021 3.17691 3.35070 3.46635 3.55155 3.62437 3.66773 3.82104 3.93106 3.94644 3.98255 4.08212 4.33224 4.38953 4.41952 4.47542 4.54518 4.58368 4.58954 4.61692 4.66633 4.68309 4.69090 4.76448 4.81783 4.87191 4.93232 4.96362 5.03817 5.08426 5.18846 5.26156 5.30085 5.31915 5.33995 5.40955 5.44697 5.45221 5.62975 5.64117 5.76774 6.06563 6.19662 6.47459 6.82406 7.10033 7.17601 7.77805 8.41944 9.27112 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014151 B = 0.002686 C = 0.002588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.242544 B =10423.290895 C =10816.395550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.379 6.379 3 C 0.079 3.921 4 H 0.115 0.885 5 C 0.508 3.492 6 O -0.569 6.569 7 N -0.714 5.714 8 C 0.121 3.879 9 C 0.123 3.877 10 O -0.552 6.552 11 C -0.122 4.122 12 C 0.191 3.809 13 N -0.621 5.621 14 C -0.242 4.242 15 H 0.088 0.912 16 C -0.069 4.069 17 N -0.953 5.953 18 Si 0.979 3.021 19 H -0.276 1.276 20 H -0.298 1.298 21 H -0.275 1.275 22 C 0.114 3.886 23 C -0.090 4.090 24 C -0.110 4.110 25 C -0.117 4.117 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.106 4.106 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.065 0.935 32 H 0.411 0.589 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.383 0.617 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.246 0.754 41 H 0.058 0.942 42 H 0.034 0.966 43 H 0.097 0.903 44 H 0.064 0.936 45 H 0.078 0.922 46 H 0.067 0.933 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.057 0.943 50 H 0.066 0.934 51 H 0.057 0.943 52 H 0.037 0.963 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.273 -15.893 -17.280 26.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.296 6.296 3 C 0.018 3.982 4 H 0.133 0.867 5 C 0.295 3.705 6 O -0.447 6.447 7 N -0.368 5.368 8 C -0.004 4.004 9 C 0.081 3.919 10 O -0.359 6.359 11 C -0.161 4.161 12 C 0.065 3.935 13 N -0.347 5.347 14 C -0.371 4.371 15 H 0.105 0.895 16 C -0.261 4.261 17 N -0.602 5.602 18 Si 0.808 3.192 19 H -0.202 1.202 20 H -0.225 1.225 21 H -0.201 1.201 22 C -0.012 4.012 23 C -0.109 4.109 24 C -0.147 4.147 25 C -0.154 4.154 26 C -0.156 4.156 27 C -0.155 4.155 28 C -0.144 4.144 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.084 0.916 32 H 0.248 0.752 33 H 0.090 0.910 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.111 0.889 37 H 0.099 0.901 38 H 0.026 0.974 39 H 0.027 0.973 40 H 0.055 0.945 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.115 0.885 44 H 0.083 0.917 45 H 0.097 0.903 46 H 0.086 0.914 47 H 0.091 0.909 48 H 0.085 0.915 49 H 0.076 0.924 50 H 0.084 0.916 51 H 0.076 0.924 52 H 0.056 0.944 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -10.460 -16.513 -16.285 25.442 hybrid contribution -0.424 1.482 0.034 1.542 sum -10.884 -15.031 -16.251 24.668 Atomic orbital electron populations 1.23154 0.79243 1.03958 1.01277 1.87995 1.21332 1.25679 1.94632 1.22183 0.95100 0.87749 0.93212 0.86750 1.21281 0.82323 0.82271 0.84638 1.90696 1.65358 1.37253 1.51407 1.45810 1.45736 1.13937 1.31349 1.21704 0.93022 0.95758 0.89910 1.22372 0.91567 0.91231 0.86716 1.86610 1.39241 1.93674 1.16339 1.22798 1.00709 0.97113 0.95469 1.20818 0.88785 0.89451 0.94404 1.44626 1.25806 1.02938 1.61297 1.19442 1.06427 0.83186 1.27998 0.89465 1.25688 0.97732 1.02296 1.00429 1.70196 1.18026 1.32185 1.39785 0.85139 0.77091 0.79317 0.77695 1.20171 1.22463 1.20065 1.22355 0.93971 0.87790 0.97085 1.21578 0.96901 1.00216 0.92205 1.21576 0.96971 1.02580 0.93602 1.21520 0.98141 0.99056 0.96715 1.21526 0.96548 0.99395 0.98110 1.21524 0.97922 1.01876 0.94185 1.21401 0.96957 0.98991 0.97003 0.88777 0.93538 0.91616 0.75219 0.91013 0.90691 0.76838 0.88872 0.90106 0.97417 0.97346 0.94521 0.92343 0.94811 0.88468 0.91685 0.90332 0.91435 0.90946 0.91451 0.92435 0.91571 0.92445 0.94422 0.92522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.42 113.37 1.18 1.44 16 2 O -0.38 -7.96 8.62 -129.97 -1.12 -9.08 16 3 C 0.08 1.40 2.38 29.85 0.07 1.47 16 4 H 0.11 1.44 7.59 -2.39 -0.02 1.42 16 5 C 0.51 12.56 6.00 87.66 0.53 13.09 16 6 O -0.57 -19.61 16.51 15.97 0.26 -19.34 16 7 N -0.71 -15.31 5.14 -463.06 -2.38 -17.69 16 8 C 0.12 3.20 4.90 86.38 0.42 3.62 16 9 C 0.12 3.89 0.94 -9.41 -0.01 3.88 16 10 O -0.55 -17.52 13.18 -148.98 -1.96 -19.49 16 11 C -0.12 -4.51 6.16 31.78 0.20 -4.32 16 12 C 0.19 9.53 5.37 86.73 0.47 10.00 16 13 N -0.62 -30.98 3.39 -691.98 -2.35 -33.33 16 14 C -0.24 -13.22 10.28 84.03 0.86 -12.35 16 15 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 16 C -0.07 -3.88 5.49 84.86 0.47 -3.42 16 17 N -0.95 -57.85 10.31 21.65 0.22 -57.63 16 18 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 C 0.11 4.14 5.92 86.85 0.51 4.66 16 23 C -0.09 -1.28 2.00 -10.79 -0.02 -1.31 16 24 C -0.11 -1.19 4.51 30.60 0.14 -1.05 16 25 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 26 C -0.12 -1.44 5.92 30.59 0.18 -1.26 16 27 C -0.12 -1.76 5.92 30.59 0.18 -1.58 16 28 C -0.11 -1.96 4.82 30.59 0.15 -1.81 16 29 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 0.59 8.08 -2.39 -0.02 0.57 16 31 H 0.07 0.59 6.99 -2.39 -0.02 0.57 16 32 H 0.41 6.62 6.81 -92.70 -0.63 5.99 16 33 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 35 H 0.38 8.59 8.23 -74.06 -0.61 7.98 16 36 H 0.09 3.04 8.01 -2.39 -0.02 3.03 16 37 H 0.08 2.85 8.14 -2.39 -0.02 2.83 16 38 H 0.01 0.44 7.38 -2.38 -0.02 0.42 16 39 H 0.01 0.47 7.50 -2.39 -0.02 0.45 16 40 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 41 H 0.06 1.89 7.97 -2.39 -0.02 1.87 16 42 H 0.03 1.22 8.04 -2.39 -0.02 1.20 16 43 H 0.10 1.12 7.63 -2.39 -0.02 1.10 16 44 H 0.06 0.80 6.88 -2.39 -0.02 0.78 16 45 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 46 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 47 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 48 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 49 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 52 H 0.04 0.87 7.27 -2.39 -0.02 0.85 16 53 H 0.06 1.22 7.64 -2.39 -0.02 1.20 16 Total: -1.00 -76.59 406.68 -0.14 -76.73 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: -0.34 Total: 22.52 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 5.51 Total: 10.05 kcal Atomic # 7 Polarization: -104.14 SS G_CDS: -4.51 Total: -108.64 kcal Atomic # 8 Polarization: -45.09 SS G_CDS: -2.82 Total: -47.91 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -76.59 -0.14 -76.73 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325169931.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.678 kcal (2) G-P(sol) polarization free energy of solvation -76.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds