Wall clock time and date at job start Sat Apr 11 2020 06:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00079 * 2 1 4 4 H 1.09002 * 109.47287 * 29.99993 * 3 2 1 5 5 C 1.50700 * 109.47271 * 270.00111 * 3 2 1 6 6 O 1.21280 * 120.00334 * 355.00377 * 5 3 2 7 7 N 1.34775 * 120.00106 * 174.99610 * 5 3 2 8 8 C 1.46502 * 120.00093 * 179.97438 * 7 5 3 9 9 C 1.53001 * 109.46910 * 180.02562 * 8 7 5 10 10 O 1.42902 * 110.64496 * 61.86158 * 9 8 7 11 11 C 1.55164 * 110.71971 * 185.00159 * 9 8 7 12 12 C 1.54909 * 101.58094 * 153.86263 * 11 9 8 13 13 N 1.47415 * 104.83420 * 322.99222 * 12 11 9 14 14 C 1.36942 * 125.64705 * 204.09149 * 13 12 11 15 15 H 1.07995 * 120.00118 * 6.64958 * 14 13 12 16 16 C 1.38811 * 120.00079 * 186.64578 * 14 13 12 17 17 N 1.31624 * 119.99877 * 7.37948 * 16 14 13 18 18 Si 1.86797 * 120.00410 * 187.37534 * 16 14 13 19 19 H 1.48501 * 109.47081 * 84.98661 * 18 16 14 20 20 H 1.48491 * 109.47599 * 204.99000 * 18 16 14 21 21 H 1.48499 * 109.46887 * 324.99289 * 18 16 14 22 22 C 1.47021 * 108.70683 * 24.35404 * 13 12 11 23 23 C 1.53002 * 109.47020 * 150.00035 * 3 2 1 24 24 C 1.53000 * 109.46708 * 60.00040 * 23 3 2 25 25 C 1.53004 * 109.46977 * 179.97438 * 24 23 3 26 26 C 1.52999 * 109.46962 * 59.99941 * 25 24 23 27 27 C 1.52998 * 109.47226 * 300.00227 * 26 25 24 28 28 C 1.52996 * 109.47015 * 300.00139 * 23 3 2 29 29 H 1.08996 * 109.47183 * 59.99443 * 1 2 3 30 30 H 1.08998 * 109.47415 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46811 * 300.00011 * 1 2 3 32 32 H 0.97005 * 119.99900 * 0.02562 * 7 5 3 33 33 H 1.08997 * 109.46806 * 60.01002 * 8 7 5 34 34 H 1.08998 * 109.47401 * 300.00437 * 8 7 5 35 35 H 0.96706 * 113.99241 * 303.14348 * 10 9 8 36 36 H 1.09004 * 111.00265 * 35.79061 * 11 9 8 37 37 H 1.09001 * 111.03539 * 271.95883 * 11 9 8 38 38 H 1.09005 * 110.36239 * 204.14798 * 12 11 9 39 39 H 1.09001 * 110.36437 * 81.83246 * 12 11 9 40 40 H 0.97004 * 119.99892 * 179.97438 * 17 16 14 41 41 H 1.09003 * 109.88440 * 118.12975 * 22 13 12 42 42 H 1.08997 * 109.88761 * 239.30090 * 22 13 12 43 43 H 1.08998 * 109.47031 * 179.97438 * 23 3 2 44 44 H 1.08995 * 109.47594 * 299.99856 * 24 23 3 45 45 H 1.08999 * 109.47178 * 60.00152 * 24 23 3 46 46 H 1.09003 * 109.47400 * 300.00602 * 25 24 23 47 47 H 1.08995 * 109.47241 * 180.02562 * 25 24 23 48 48 H 1.08999 * 109.47121 * 179.97438 * 26 25 24 49 49 H 1.09005 * 109.46931 * 59.99806 * 26 25 24 50 50 H 1.08995 * 109.47332 * 299.99820 * 27 26 25 51 51 H 1.08999 * 109.47082 * 179.97438 * 27 26 25 52 52 H 1.08995 * 109.47339 * 299.99883 * 28 23 3 53 53 H 1.08995 * 109.47138 * 60.00235 * 28 23 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2146 1.7644 -1.4208 6 8 1.9791 1.0107 -2.3414 7 7 2.6588 3.0124 -1.6685 8 6 2.8580 3.4584 -3.0497 9 6 3.3638 4.9024 -3.0515 10 8 4.6255 4.9951 -2.3870 11 6 3.4654 5.4468 -4.5009 12 6 3.3036 6.9704 -4.2730 13 7 2.3141 7.0865 -3.1865 14 6 1.5141 8.1721 -2.9483 15 1 1.5007 8.9965 -3.6458 16 6 0.7202 8.2129 -1.8103 17 7 0.8422 7.2808 -0.8890 18 14 -0.5211 9.5907 -1.5863 19 1 -1.7844 9.2368 -2.2821 20 1 -0.7906 9.7837 -0.1388 21 1 0.0248 10.8469 -2.1600 22 6 2.3328 5.8463 -2.3971 23 6 3.3590 1.2632 0.7213 24 6 4.2927 0.2891 -0.0001 25 6 5.6416 0.2473 0.7208 26 6 5.4347 -0.2183 2.1634 27 6 4.5009 0.7557 2.8847 28 6 3.1515 0.7972 2.1637 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.8474 3.6152 -0.9323 33 1 1.9124 3.4037 -3.5891 34 1 3.5918 2.8162 -3.5367 35 1 4.6158 4.6675 -1.4772 36 1 2.6590 5.0569 -5.1221 37 1 4.4376 5.2179 -4.9375 38 1 2.9322 7.4519 -5.1776 39 1 4.2532 7.4115 -3.9700 40 1 0.2877 7.3096 -0.0936 41 1 2.6267 6.0648 -1.3704 42 1 1.3466 5.3825 -2.4119 43 1 3.8025 2.2588 0.7209 44 1 3.8494 -0.7066 -0.0001 45 1 4.4404 0.6211 -1.0277 46 1 6.0848 1.2432 0.7205 47 1 6.3070 -0.4462 0.2067 48 1 6.3957 -0.2485 2.6768 49 1 4.9914 -1.2141 2.1638 50 1 4.9440 1.7515 2.8844 51 1 4.3531 0.4238 3.9123 52 1 2.4863 1.4911 2.6776 53 1 2.7082 -0.1985 2.1637 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325169935.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:52 Heat of formation + Delta-G solvation = -149.352932 kcal Electronic energy + Delta-G solvation = -32082.144854 eV Core-core repulsion = 27952.706167 eV Total energy + Delta-G solvation = -4129.438688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.57588 -40.27182 -39.10995 -37.98642 -36.73013 -35.32079 -34.13968 -33.06403 -31.60561 -31.22000 -29.70682 -28.38500 -27.65061 -26.69066 -25.07808 -23.57104 -22.90220 -22.19832 -21.36972 -21.17843 -20.54987 -19.19505 -18.64184 -17.93458 -17.61538 -17.18736 -16.60032 -16.48573 -16.02945 -15.81845 -15.62808 -15.50044 -15.43616 -15.02389 -14.89487 -14.68747 -14.56089 -14.36928 -14.10988 -13.93608 -13.63611 -13.36015 -13.16044 -13.02786 -12.96847 -12.78976 -12.74798 -12.36993 -12.32307 -12.12891 -11.97428 -11.95344 -11.94827 -11.79947 -11.76905 -11.56257 -11.31217 -11.09485 -10.90900 -10.89032 -10.70138 -10.27606 -10.18460 -8.88754 -7.85619 -5.21347 1.46649 1.47909 1.51906 1.55490 1.98391 2.48906 2.77675 3.17723 3.32351 3.41255 3.55534 3.62582 3.81091 3.88094 3.88989 3.92436 3.96586 4.10488 4.32474 4.40094 4.42611 4.43854 4.49667 4.52376 4.53090 4.61302 4.67012 4.69091 4.71249 4.77112 4.79837 4.80509 4.94913 5.00753 5.04718 5.19745 5.27872 5.29266 5.30008 5.32562 5.35068 5.36029 5.41038 5.45656 5.52357 5.64836 5.67273 5.96490 6.18849 6.42859 6.75700 7.09380 7.13570 7.75498 8.40689 9.23372 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003199 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.940854 B = 8750.060735 C = 9262.290377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.366 6.366 3 C 0.079 3.921 4 H 0.101 0.899 5 C 0.494 3.506 6 O -0.571 6.571 7 N -0.714 5.714 8 C 0.120 3.880 9 C 0.106 3.894 10 O -0.552 6.552 11 C -0.108 4.108 12 C 0.129 3.871 13 N -0.625 5.625 14 C -0.246 4.246 15 H 0.079 0.921 16 C -0.059 4.059 17 N -0.943 5.943 18 Si 0.974 3.026 19 H -0.288 1.288 20 H -0.292 1.292 21 H -0.273 1.273 22 C 0.173 3.827 23 C -0.073 4.073 24 C -0.106 4.106 25 C -0.116 4.116 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.107 4.107 29 H 0.025 0.975 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.409 0.591 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.382 0.618 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.049 0.951 39 H 0.020 0.980 40 H 0.248 0.752 41 H 0.037 0.963 42 H 0.007 0.993 43 H 0.097 0.903 44 H 0.057 0.943 45 H 0.039 0.961 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.070 0.930 49 H 0.058 0.942 50 H 0.067 0.933 51 H 0.072 0.928 52 H 0.070 0.930 53 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 -15.068 6.860 17.911 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.283 6.283 3 C 0.017 3.983 4 H 0.118 0.882 5 C 0.281 3.719 6 O -0.450 6.450 7 N -0.368 5.368 8 C -0.005 4.005 9 C 0.065 3.935 10 O -0.359 6.359 11 C -0.146 4.146 12 C 0.004 3.996 13 N -0.352 5.352 14 C -0.375 4.375 15 H 0.097 0.903 16 C -0.253 4.253 17 N -0.592 5.592 18 Si 0.803 3.197 19 H -0.215 1.215 20 H -0.218 1.218 21 H -0.198 1.198 22 C 0.047 3.953 23 C -0.091 4.091 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.155 4.155 27 C -0.154 4.154 28 C -0.145 4.145 29 H 0.043 0.957 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.245 0.755 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.230 0.770 36 H 0.108 0.892 37 H 0.118 0.882 38 H 0.067 0.933 39 H 0.038 0.962 40 H 0.057 0.943 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.115 0.885 44 H 0.076 0.924 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.089 0.911 49 H 0.076 0.924 50 H 0.085 0.915 51 H 0.091 0.909 52 H 0.089 0.911 53 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.816 -15.451 5.769 17.846 hybrid contribution -1.353 1.130 0.727 1.907 sum 5.463 -14.322 6.496 16.648 Atomic orbital electron populations 1.22996 0.79950 1.04115 1.00140 1.87940 1.20856 1.25280 1.94253 1.22257 0.98547 0.86926 0.90544 0.88171 1.21831 0.75872 0.81173 0.93053 1.90664 1.51897 1.54889 1.47537 1.45938 1.67440 1.14351 1.09033 1.21741 1.00890 0.94154 0.83668 1.22555 0.84093 0.91991 0.94899 1.86506 1.31011 1.87362 1.30988 1.22708 1.03562 0.95150 0.93177 1.21718 0.91678 0.95101 0.91084 1.44717 1.43208 1.14752 1.32511 1.19422 1.16607 0.96875 1.04577 0.90326 1.25536 1.02382 1.01137 0.96195 1.70075 1.42648 1.36532 1.09905 0.85164 0.79026 0.79091 0.76460 1.21543 1.21834 1.19762 1.21555 0.94200 0.85192 0.94327 1.21316 0.90878 1.01132 0.95798 1.21429 0.95826 0.99443 0.97657 1.21522 0.95893 1.01871 0.96078 1.21529 0.99882 0.99047 0.95028 1.21537 0.94730 1.00076 0.99095 1.21505 0.98172 1.02047 0.92738 0.95664 0.87762 0.91948 0.75524 0.92169 0.90270 0.76957 0.89241 0.88186 0.93258 0.96243 0.94269 0.94458 0.97487 0.88476 0.92413 0.94215 0.91475 0.91963 0.91094 0.92352 0.91464 0.90915 0.91107 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.52 10.81 113.37 1.23 1.74 16 2 O -0.37 -9.40 8.54 -129.99 -1.11 -10.51 16 3 C 0.08 1.89 2.26 29.85 0.07 1.96 16 4 H 0.10 2.14 7.79 -2.39 -0.02 2.13 16 5 C 0.49 14.97 5.87 87.66 0.51 15.49 16 6 O -0.57 -21.76 16.51 15.96 0.26 -21.50 16 7 N -0.71 -20.39 5.09 -463.06 -2.36 -22.74 16 8 C 0.12 3.78 4.74 86.38 0.41 4.18 16 9 C 0.11 3.67 0.93 -9.60 -0.01 3.66 16 10 O -0.55 -17.81 13.10 -148.98 -1.95 -19.76 16 11 C -0.11 -3.56 6.26 31.99 0.20 -3.36 16 12 C 0.13 5.27 7.22 86.86 0.63 5.90 16 13 N -0.63 -31.45 3.39 -691.98 -2.35 -33.79 16 14 C -0.25 -13.56 10.26 84.03 0.86 -12.70 16 15 H 0.08 4.20 7.84 -2.91 -0.02 4.17 16 16 C -0.06 -3.24 5.45 84.86 0.46 -2.78 16 17 N -0.94 -53.30 10.48 21.65 0.23 -53.07 16 18 Si 0.97 44.64 29.56 68.60 2.03 46.67 16 19 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 20 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 C 0.17 7.85 4.22 86.73 0.37 8.21 16 23 C -0.07 -1.40 2.04 -10.79 -0.02 -1.43 16 24 C -0.11 -2.27 4.81 30.60 0.15 -2.12 16 25 C -0.12 -1.96 5.92 30.60 0.18 -1.78 16 26 C -0.12 -1.69 5.92 30.59 0.18 -1.51 16 27 C -0.12 -1.62 5.92 30.61 0.18 -1.44 16 28 C -0.11 -1.74 5.06 30.61 0.15 -1.58 16 29 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.06 1.07 8.08 -2.39 -0.02 1.05 16 32 H 0.41 10.53 7.16 -92.70 -0.66 9.86 16 33 H 0.06 2.10 8.13 -2.39 -0.02 2.08 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.38 9.79 8.05 -74.05 -0.60 9.19 16 36 H 0.09 2.79 8.04 -2.39 -0.02 2.77 16 37 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 38 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 39 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.25 13.62 8.31 -92.71 -0.77 12.85 16 41 H 0.04 1.88 6.92 -2.39 -0.02 1.86 16 42 H 0.01 0.36 7.59 -2.39 -0.02 0.34 16 43 H 0.10 1.67 7.92 -2.39 -0.02 1.65 16 44 H 0.06 1.40 7.68 -2.39 -0.02 1.39 16 45 H 0.04 1.01 7.22 -2.39 -0.02 0.99 16 46 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 47 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 49 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 50 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 51 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 52 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 53 H 0.07 1.18 7.68 -2.39 -0.02 1.16 16 Total: -1.00 -70.21 409.95 -0.07 -70.28 By element: Atomic # 1 Polarization: 32.35 SS G_CDS: -0.37 Total: 31.98 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 5.55 Total: 12.45 kcal Atomic # 7 Polarization: -105.13 SS G_CDS: -4.48 Total: -109.61 kcal Atomic # 8 Polarization: -48.97 SS G_CDS: -2.80 Total: -51.77 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Total: -70.21 -0.07 -70.28 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325169935.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.076 kcal (2) G-P(sol) polarization free energy of solvation -70.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds