Wall clock time and date at job start Sat Apr 11 2020 06:12:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42903 * 113.99780 * 2 1 4 4 C 1.53000 * 109.47254 * 149.99875 * 3 2 1 5 5 C 1.52995 * 109.47254 * 179.97438 * 4 3 2 6 6 C 1.53006 * 109.47254 * 300.00510 * 5 4 3 7 7 C 1.50699 * 109.46815 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99737 * 239.99555 * 7 6 5 9 9 N 1.34771 * 120.00095 * 59.99779 * 7 6 5 10 10 C 1.46505 * 119.99854 * 174.69952 * 9 7 6 11 11 C 1.52995 * 109.54400 * 304.07292 * 10 9 7 12 12 N 1.46502 * 109.47238 * 305.58191 * 11 10 9 13 13 C 1.36938 * 119.99994 * 175.02674 * 12 11 10 14 14 H 1.07997 * 120.00373 * 359.97438 * 13 12 11 15 15 C 1.38818 * 119.99912 * 180.02562 * 13 12 11 16 16 N 1.31619 * 119.99556 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99873 * 179.97438 * 15 13 12 18 18 H 1.48492 * 109.47021 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46753 * 120.00247 * 17 15 13 20 20 H 1.48502 * 109.47000 * 239.99535 * 17 15 13 21 21 C 1.53178 * 109.54419 * 183.89590 * 10 9 7 22 22 C 1.53279 * 109.06294 * 297.03043 * 21 10 9 23 23 O 1.42908 * 109.46052 * 302.44488 * 22 21 10 24 24 C 1.42901 * 114.09633 * 61.15948 * 23 22 21 25 25 C 1.53090 * 109.41341 * 298.84035 * 24 23 22 26 26 C 1.53001 * 109.47032 * 59.99579 * 6 5 4 27 27 C 1.52991 * 109.47499 * 299.99962 * 26 6 5 28 28 H 1.09001 * 109.46596 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46920 * 299.99656 * 1 2 3 30 30 H 1.08998 * 109.47176 * 60.00471 * 1 2 3 31 31 H 1.09000 * 109.47197 * 29.99735 * 3 2 1 32 32 H 1.08993 * 109.47174 * 300.00456 * 4 3 2 33 33 H 1.09002 * 109.46551 * 60.00298 * 4 3 2 34 34 H 1.09000 * 109.46992 * 59.99986 * 5 4 3 35 35 H 1.08995 * 109.46965 * 179.97438 * 5 4 3 36 36 H 1.09000 * 109.46694 * 299.99659 * 6 5 4 37 37 H 0.96999 * 120.00319 * 354.70158 * 9 7 6 38 38 H 1.08998 * 109.47532 * 65.58330 * 11 10 9 39 39 H 1.09002 * 109.47498 * 185.58359 * 11 10 9 40 40 H 0.97000 * 119.99732 * 355.02816 * 12 11 10 41 41 H 0.97001 * 119.99383 * 180.02562 * 16 15 13 42 42 H 1.09001 * 109.51996 * 57.01592 * 21 10 9 43 43 H 1.08999 * 109.52265 * 177.21085 * 21 10 9 44 44 H 1.09000 * 109.46109 * 182.45094 * 22 21 10 45 45 H 1.09002 * 109.46826 * 62.44673 * 22 21 10 46 46 H 1.09003 * 109.47951 * 178.86355 * 24 23 22 47 47 H 1.08996 * 109.48922 * 58.82950 * 24 23 22 48 48 H 1.09000 * 109.52308 * 297.70055 * 25 24 23 49 49 H 1.09006 * 109.57283 * 177.54814 * 25 24 23 50 50 H 1.09002 * 109.46613 * 179.97438 * 26 6 5 51 51 H 1.08998 * 109.46809 * 60.00470 * 26 6 5 52 52 H 1.09000 * 109.47243 * 300.00543 * 27 26 6 53 53 H 1.08996 * 109.47288 * 179.97438 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.3589 1.2634 0.7213 5 6 3.9815 2.6610 0.7207 6 6 4.1889 3.1264 -0.7220 7 6 4.8027 4.5027 -0.7224 8 8 4.2188 5.4268 -1.2478 9 7 6.0003 4.7066 -0.1391 10 6 6.6507 6.0156 -0.2397 11 6 6.8037 6.3992 -1.7129 12 7 7.5073 5.3299 -2.4255 13 6 7.6709 5.4042 -3.7830 14 1 7.2808 6.2507 -4.3284 15 6 8.3372 4.3907 -4.4583 16 7 8.8121 3.3587 -3.7936 17 14 8.5597 4.4917 -6.3102 18 1 7.9396 5.7426 -6.8158 19 1 10.0087 4.4915 -6.6354 20 1 7.9084 3.3213 -6.9515 21 6 8.0319 5.9535 0.4197 22 6 7.8610 5.6460 1.9116 23 8 7.0340 6.6450 2.5119 24 6 5.7155 6.7163 1.9657 25 6 5.7992 7.0673 0.4780 26 6 2.8402 3.1684 -1.4432 27 6 2.2177 1.7709 -1.4427 28 1 -0.3632 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.3450 1.9994 0.5138 32 1 3.2112 0.9314 1.7489 33 1 4.0242 0.5695 0.2073 34 1 3.3163 3.3552 1.2343 35 1 4.9420 2.6310 1.2349 36 1 4.8540 2.4321 -1.2356 37 1 6.4318 3.9868 0.3473 38 1 5.8179 6.5430 -2.1552 39 1 7.3750 7.3243 -1.7900 40 1 7.8573 4.5694 -1.9356 41 1 9.2780 2.6508 -4.2654 42 1 8.6250 5.1691 -0.0504 43 1 8.5355 6.9129 0.3012 44 1 8.8375 5.6434 2.3960 45 1 7.3939 4.6683 2.0298 46 1 5.1463 7.4847 2.4890 47 1 5.2201 5.7527 2.0845 48 1 6.2578 8.0492 0.3607 49 1 4.7973 7.0797 0.0487 50 1 2.9880 3.5004 -2.4709 51 1 2.1751 3.8627 -0.9296 52 1 2.8829 1.0767 -1.9563 53 1 1.2567 1.8010 -1.9561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327656161.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:17 Heat of formation + Delta-G solvation = -156.233392 kcal Electronic energy + Delta-G solvation = -32438.514653 eV Core-core repulsion = 28308.777607 eV Total energy + Delta-G solvation = -4129.737047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.88916 -40.36710 -39.26223 -37.45207 -36.83430 -35.46134 -33.35463 -32.35182 -32.04325 -31.73962 -30.85223 -28.17735 -27.40781 -25.46340 -24.75691 -24.23892 -23.64017 -22.99881 -21.80985 -20.78239 -20.25856 -19.26848 -18.39605 -17.52960 -17.12603 -17.02300 -16.86136 -16.78241 -16.31137 -16.02667 -15.89110 -15.61096 -15.34234 -15.28379 -14.92120 -14.81992 -14.47980 -14.24957 -14.06289 -13.84478 -13.58535 -13.33071 -13.27165 -13.08532 -13.03062 -12.87370 -12.81143 -12.76354 -12.32521 -12.24338 -12.10895 -12.10292 -11.96871 -11.89815 -11.63254 -11.55701 -11.32856 -11.30823 -11.01254 -10.59446 -10.39149 -10.35393 -9.84277 -8.96111 -7.97172 -5.22779 1.42698 1.43560 1.53120 1.78810 2.27605 2.53269 2.81267 2.98364 3.35948 3.56569 3.63040 3.70182 3.76875 3.85526 3.89327 4.02820 4.11192 4.14917 4.25216 4.26412 4.29959 4.34421 4.43532 4.47708 4.48679 4.54126 4.58219 4.66305 4.77081 4.79286 4.80760 4.81996 4.87261 4.87750 4.90022 5.01310 5.08069 5.09478 5.12226 5.16430 5.16926 5.18041 5.23415 5.31782 5.39128 5.45776 5.70115 6.25808 6.26969 6.31043 6.69177 7.33661 7.41846 8.06996 8.36452 9.25618 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007834 B = 0.004378 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3573.346401 B = 6393.469672 C = 9017.324328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.406 6.406 3 C 0.090 3.910 4 C -0.110 4.110 5 C -0.095 4.095 6 C -0.105 4.105 7 C 0.526 3.474 8 O -0.570 6.570 9 N -0.705 5.705 10 C 0.181 3.819 11 C 0.144 3.856 12 N -0.726 5.726 13 C -0.243 4.243 14 H 0.060 0.940 15 C -0.064 4.064 16 N -0.960 5.960 17 Si 0.964 3.036 18 H -0.275 1.275 19 H -0.289 1.289 20 H -0.293 1.293 21 C -0.149 4.149 22 C 0.066 3.934 23 O -0.392 6.392 24 C 0.073 3.927 25 C -0.156 4.156 26 C -0.087 4.087 27 C -0.134 4.134 28 H 0.095 0.905 29 H 0.053 0.947 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.088 0.912 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.088 0.912 37 H 0.405 0.595 38 H 0.023 0.977 39 H 0.013 0.987 40 H 0.378 0.622 41 H 0.251 0.749 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.044 0.956 51 H 0.070 0.930 52 H 0.059 0.941 53 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.676 -3.075 16.902 21.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.325 6.325 3 C 0.033 3.967 4 C -0.147 4.147 5 C -0.133 4.133 6 C -0.126 4.126 7 C 0.313 3.687 8 O -0.449 6.449 9 N -0.357 5.357 10 C 0.095 3.905 11 C 0.016 3.984 12 N -0.369 5.369 13 C -0.375 4.375 14 H 0.078 0.922 15 C -0.257 4.257 16 N -0.610 5.610 17 Si 0.794 3.206 18 H -0.200 1.200 19 H -0.216 1.216 20 H -0.220 1.220 21 C -0.187 4.187 22 C -0.010 4.010 23 O -0.311 6.311 24 C -0.004 4.004 25 C -0.195 4.195 26 C -0.126 4.126 27 C -0.172 4.172 28 H 0.114 0.886 29 H 0.071 0.929 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.107 0.893 33 H 0.084 0.916 34 H 0.096 0.904 35 H 0.107 0.893 36 H 0.106 0.894 37 H 0.242 0.758 38 H 0.041 0.959 39 H 0.031 0.969 40 H 0.212 0.788 41 H 0.060 0.940 42 H 0.092 0.908 43 H 0.097 0.903 44 H 0.131 0.869 45 H 0.083 0.917 46 H 0.125 0.875 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.096 0.904 50 H 0.063 0.937 51 H 0.089 0.911 52 H 0.078 0.922 53 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.923 -2.370 16.500 21.092 hybrid contribution 0.429 -0.408 -1.840 1.933 sum -12.494 -2.778 14.660 19.461 Atomic orbital electron populations 1.22957 0.79966 1.03648 1.00654 1.87885 1.21075 1.28433 1.95143 1.22200 0.95513 0.84248 0.94755 1.21538 0.94869 0.96718 1.01623 1.21450 1.02623 0.96568 0.92640 1.21376 0.98062 0.93181 1.00018 1.20814 0.80794 0.90808 0.76245 1.90599 1.63025 1.45481 1.45762 1.45867 1.20292 1.13870 1.55650 1.20382 0.92698 0.83727 0.93734 1.21102 0.94816 0.90881 0.91606 1.42229 1.67064 1.23640 1.03999 1.19518 1.28658 1.03796 0.85492 0.92226 1.25346 1.01750 0.96994 1.01624 1.69767 1.44328 1.11368 1.35576 0.85213 0.77119 0.77108 0.81180 1.20024 1.21585 1.22018 1.22400 0.95113 1.03965 0.97237 1.22698 0.96215 0.91253 0.90869 1.87904 1.24472 1.58102 1.60611 1.22527 0.84110 1.02060 0.91699 1.22468 1.01526 0.98418 0.97089 1.21153 0.94726 0.96792 0.99893 1.21985 1.01236 0.95889 0.98098 0.88631 0.92856 0.93857 0.90898 0.89314 0.91556 0.90362 0.89276 0.89391 0.75828 0.95897 0.96943 0.78848 0.93988 0.90831 0.90261 0.86891 0.91724 0.87472 0.92469 0.90707 0.90423 0.93738 0.91082 0.92201 0.91129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 10.82 113.37 1.23 1.57 16 2 O -0.41 -8.46 10.35 -148.98 -1.54 -10.00 16 3 C 0.09 1.74 2.61 30.60 0.08 1.82 16 4 C -0.11 -1.94 5.57 30.59 0.17 -1.77 16 5 C -0.10 -1.72 5.10 30.59 0.16 -1.56 16 6 C -0.11 -2.79 2.53 -11.54 -0.03 -2.81 16 7 C 0.53 17.12 6.57 87.66 0.58 17.69 16 8 O -0.57 -22.71 12.29 -3.04 -0.04 -22.75 16 9 N -0.70 -20.56 3.68 -422.39 -1.55 -22.12 16 10 C 0.18 5.76 0.32 3.72 0.00 5.76 16 11 C 0.14 6.21 4.79 86.38 0.41 6.62 16 12 N -0.73 -36.98 5.21 -343.45 -1.79 -38.77 16 13 C -0.24 -14.01 9.99 84.03 0.84 -13.17 16 14 H 0.06 3.48 7.83 -2.91 -0.02 3.45 16 15 C -0.06 -3.72 5.50 84.86 0.47 -3.25 16 16 N -0.96 -57.43 13.06 21.65 0.28 -57.15 16 17 Si 0.96 47.25 29.55 68.60 2.03 49.28 16 18 H -0.28 -13.09 7.11 99.48 0.71 -12.39 16 19 H -0.29 -13.93 7.11 99.48 0.71 -13.23 16 20 H -0.29 -14.32 7.11 99.48 0.71 -13.61 16 21 C -0.15 -4.18 4.84 30.75 0.15 -4.04 16 22 C 0.07 1.41 6.67 72.08 0.48 1.89 16 23 O -0.39 -9.27 10.77 -148.98 -1.60 -10.87 16 24 C 0.07 1.61 6.68 72.01 0.48 2.09 16 25 C -0.16 -4.38 4.82 30.68 0.15 -4.23 16 26 C -0.09 -2.35 4.49 30.59 0.14 -2.21 16 27 C -0.13 -3.05 5.54 30.59 0.17 -2.88 16 28 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.62 8.08 -2.39 -0.02 0.60 16 30 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.07 1.22 7.79 -2.39 -0.02 1.20 16 32 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.09 1.32 7.45 -2.39 -0.02 1.31 16 36 H 0.09 2.61 8.14 -2.39 -0.02 2.59 16 37 H 0.41 9.83 6.68 -92.71 -0.62 9.21 16 38 H 0.02 1.13 6.26 -2.39 -0.01 1.11 16 39 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.38 19.53 6.51 -92.71 -0.60 18.93 16 41 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.07 2.33 7.22 -2.39 -0.02 2.31 16 43 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 44 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 45 H 0.06 1.16 7.02 -2.39 -0.02 1.14 16 46 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.06 1.17 7.75 -2.39 -0.02 1.15 16 48 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.08 2.47 6.26 -2.38 -0.01 2.46 16 50 H 0.04 1.46 8.10 -2.39 -0.02 1.44 16 51 H 0.07 1.83 8.10 -2.39 -0.02 1.81 16 52 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 53 H 0.07 1.49 7.87 -2.39 -0.02 1.47 16 Total: -1.00 -71.12 401.71 0.93 -70.19 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.32 Total: 40.68 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.47 Total: 1.51 kcal Atomic # 7 Polarization: -114.98 SS G_CDS: -3.06 Total: -118.04 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -3.18 Total: -43.62 kcal Atomic # 14 Polarization: 47.25 SS G_CDS: 2.03 Total: 49.28 kcal Total: -71.12 0.93 -70.19 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327656161.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.039 kcal (2) G-P(sol) polarization free energy of solvation -71.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds