Wall clock time and date at job start Sat Apr 11 2020 06:12:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42898 * 114.00481 * 2 1 4 4 C 1.52997 * 109.47746 * 149.99735 * 3 2 1 5 5 C 1.53002 * 109.46868 * 60.00059 * 4 3 2 6 6 C 1.53001 * 109.47113 * 60.00125 * 5 4 3 7 7 C 1.50701 * 109.46869 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99977 * 22.16570 * 7 6 5 9 9 N 1.34777 * 119.99800 * 202.15931 * 7 6 5 10 10 C 1.46928 * 120.63200 * 4.08940 * 9 7 6 11 11 C 1.53624 * 108.54011 * 126.36644 * 10 9 7 12 12 C 1.53040 * 109.24192 * 54.86144 * 11 10 9 13 13 O 1.42897 * 109.44993 * 58.51981 * 12 11 10 14 14 C 1.52999 * 109.45841 * 178.48879 * 12 11 10 15 15 N 1.46502 * 109.47018 * 305.06604 * 14 12 11 16 16 C 1.36933 * 120.00011 * 180.02562 * 15 14 12 17 17 H 1.08009 * 119.99977 * 359.97438 * 16 15 14 18 18 C 1.38814 * 120.00243 * 179.97438 * 16 15 14 19 19 N 1.31615 * 119.99762 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00322 * 179.97438 * 18 16 15 21 21 H 1.48506 * 109.46985 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47198 * 120.00296 * 20 18 16 23 23 H 1.48498 * 109.47411 * 240.00618 * 20 18 16 24 24 C 1.53045 * 109.53625 * 298.50353 * 12 11 10 25 25 C 1.46930 * 120.63064 * 184.36960 * 9 7 6 26 26 C 1.52997 * 109.47151 * 299.99701 * 6 5 4 27 27 C 1.53001 * 109.46965 * 270.00057 * 3 2 1 28 28 H 1.09000 * 109.47227 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46615 * 300.00184 * 1 2 3 30 30 H 1.09001 * 109.46757 * 60.00011 * 1 2 3 31 31 H 1.08998 * 109.46787 * 29.99790 * 3 2 1 32 32 H 1.08999 * 109.46991 * 300.00200 * 4 3 2 33 33 H 1.08999 * 109.47500 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.47472 * 300.00118 * 5 4 3 35 35 H 1.09005 * 109.47054 * 180.02562 * 5 4 3 36 36 H 1.08999 * 109.47147 * 60.00197 * 6 5 4 37 37 H 1.09003 * 109.58535 * 246.20172 * 10 9 7 38 38 H 1.08999 * 109.58362 * 6.62665 * 10 9 7 39 39 H 1.08995 * 109.63885 * 294.86299 * 11 10 9 40 40 H 1.09001 * 109.42499 * 174.72499 * 11 10 9 41 41 H 0.96698 * 114.00318 * 59.94532 * 13 12 11 42 42 H 1.08997 * 109.47468 * 65.06087 * 14 12 11 43 43 H 1.09007 * 109.47046 * 185.06623 * 14 12 11 44 44 H 0.96997 * 119.99950 * 359.97438 * 15 14 12 45 45 H 0.97000 * 120.00476 * 179.97438 * 19 18 16 46 46 H 1.09000 * 109.49559 * 301.42142 * 24 12 11 47 47 H 1.08995 * 109.49633 * 181.31921 * 24 12 11 48 48 H 1.09005 * 109.58196 * 353.37031 * 25 9 7 49 49 H 1.08995 * 109.58710 * 113.79472 * 25 9 7 50 50 H 1.08999 * 109.46991 * 180.02562 * 26 6 5 51 51 H 1.08999 * 109.47500 * 300.00280 * 26 6 5 52 52 H 1.09000 * 109.47055 * 59.99600 * 27 3 2 53 53 H 1.08999 * 109.47147 * 179.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.3589 1.2633 0.7213 5 6 4.2927 0.2892 0.0000 6 6 4.5002 0.7550 -1.4425 7 6 5.4204 -0.2041 -2.1526 8 8 5.5483 -1.3381 -1.7421 9 7 6.1012 0.1984 -3.2440 10 6 6.0262 1.5927 -3.7011 11 6 7.4552 2.1412 -3.8325 12 6 8.2657 1.2224 -4.7495 13 8 7.6317 1.1463 -6.0278 14 6 9.6791 1.7846 -4.9141 15 7 9.6021 3.1677 -5.3909 16 6 10.7501 3.8803 -5.6130 17 1 11.7124 3.4228 -5.4364 18 6 10.6771 5.1906 -6.0653 19 7 9.5044 5.7483 -6.2801 20 14 12.2431 6.1630 -6.3677 21 1 13.4209 5.3151 -6.0526 22 1 12.3002 6.5790 -7.7921 23 1 12.2534 7.3676 -5.4994 24 6 8.3421 -0.1768 -4.1341 25 6 6.9276 -0.7503 -4.0028 26 6 3.1515 0.7972 -2.1638 27 6 2.2177 1.7713 -1.4425 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 1.3450 1.9993 0.5138 32 1 3.2111 0.9314 1.7489 33 1 3.8025 2.2589 0.7208 34 1 3.8494 -0.7066 0.0000 35 1 5.2534 0.2588 0.5142 36 1 4.9436 1.7508 -1.4425 37 1 5.5256 1.6337 -4.6685 38 1 5.4710 2.1860 -2.9746 39 1 7.9244 2.1802 -2.8495 40 1 7.4209 3.1434 -4.2598 41 1 7.5491 1.9985 -6.4772 42 1 10.1943 1.7596 -3.9538 43 1 10.2283 1.1811 -5.6369 44 1 8.7379 3.5784 -5.5499 45 1 9.4533 6.6641 -6.5958 46 1 8.8029 -0.1159 -3.1482 47 1 8.9391 -0.8245 -4.7760 48 1 6.9673 -1.7034 -3.4754 49 1 6.4991 -0.8965 -4.9943 50 1 3.2994 1.1286 -3.1915 51 1 2.7081 -0.1986 -2.1637 52 1 1.2569 1.8013 -1.9563 53 1 2.6607 2.7672 -1.4426 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328198117.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:20 Heat of formation + Delta-G solvation = -155.021842 kcal Electronic energy + Delta-G solvation = -31549.772386 eV Core-core repulsion = 27420.087876 eV Total energy + Delta-G solvation = -4129.684510 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.74258 -40.32424 -39.40529 -36.85079 -36.70669 -35.78421 -33.52603 -32.78925 -31.78893 -31.68174 -31.10947 -28.26511 -27.33541 -25.83383 -24.52738 -24.43253 -23.61462 -22.93635 -21.48480 -20.63421 -19.86404 -19.44087 -18.30431 -17.30282 -17.25622 -17.01006 -16.74730 -16.70774 -16.24892 -16.06663 -15.83242 -15.65111 -15.15008 -14.98811 -14.84747 -14.63448 -14.39777 -14.31098 -14.08500 -13.68750 -13.61221 -13.40369 -13.25565 -13.13729 -13.04636 -12.92226 -12.81732 -12.72412 -12.31312 -12.28025 -12.23164 -12.04431 -12.02078 -11.98120 -11.64831 -11.40714 -11.31131 -11.27413 -10.98315 -10.79258 -10.51879 -10.33635 -9.63107 -9.01820 -7.96875 -5.24709 1.47732 1.49083 1.57973 1.60602 1.99953 2.54887 2.96458 3.25673 3.40340 3.45801 3.65531 3.71371 3.75590 3.76001 3.91821 4.02680 4.07931 4.18752 4.23671 4.25996 4.30440 4.36887 4.43293 4.51367 4.56058 4.59645 4.60211 4.61390 4.72828 4.75682 4.80523 4.82995 4.85706 4.89311 4.92526 4.97992 5.04786 5.08015 5.09561 5.17698 5.22886 5.27080 5.32973 5.34228 5.47740 5.50039 5.56691 6.25680 6.40134 6.43057 6.75937 7.16662 7.33854 8.03970 8.30545 9.25902 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.017561 B = 0.002436 C = 0.002270 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.034858 B =11491.594323 C =12329.308813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.405 6.405 3 C 0.083 3.917 4 C -0.112 4.112 5 C -0.093 4.093 6 C -0.101 4.101 7 C 0.515 3.485 8 O -0.586 6.586 9 N -0.605 5.605 10 C 0.117 3.883 11 C -0.150 4.150 12 C 0.139 3.861 13 O -0.562 6.562 14 C 0.128 3.872 15 N -0.735 5.735 16 C -0.246 4.246 17 H 0.069 0.931 18 C -0.066 4.066 19 N -0.961 5.961 20 Si 0.968 3.032 21 H -0.272 1.272 22 H -0.293 1.293 23 H -0.292 1.292 24 C -0.111 4.111 25 C 0.121 3.879 26 C -0.096 4.096 27 C -0.135 4.135 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.047 0.953 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.053 0.947 35 H 0.055 0.945 36 H 0.112 0.888 37 H 0.081 0.919 38 H 0.109 0.891 39 H 0.070 0.930 40 H 0.076 0.924 41 H 0.382 0.618 42 H 0.025 0.975 43 H 0.020 0.980 44 H 0.378 0.622 45 H 0.253 0.747 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.052 0.948 52 H 0.075 0.925 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.495 -7.970 12.161 23.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.325 6.325 3 C 0.025 3.975 4 C -0.150 4.150 5 C -0.131 4.131 6 C -0.122 4.122 7 C 0.305 3.695 8 O -0.466 6.466 9 N -0.337 5.337 10 C -0.005 4.005 11 C -0.189 4.189 12 C 0.098 3.902 13 O -0.369 6.369 14 C 0.001 3.999 15 N -0.380 5.380 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.259 4.259 19 N -0.612 5.612 20 Si 0.797 3.203 21 H -0.196 1.196 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.149 4.149 25 C -0.001 4.001 26 C -0.134 4.134 27 C -0.173 4.173 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.098 0.902 32 H 0.091 0.909 33 H 0.114 0.886 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.231 0.769 42 H 0.043 0.957 43 H 0.037 0.963 44 H 0.213 0.787 45 H 0.062 0.938 46 H 0.097 0.903 47 H 0.104 0.896 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.091 0.909 51 H 0.070 0.930 52 H 0.093 0.907 53 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.151 -9.352 12.517 23.949 hybrid contribution 0.800 1.429 -0.686 1.775 sum -17.351 -7.923 11.831 22.445 Atomic orbital electron populations 1.22901 0.80389 1.03156 1.00656 1.87954 1.20575 1.28809 1.95140 1.22280 0.94961 0.84526 0.95712 1.21680 0.93639 1.00529 0.99103 1.21201 0.99399 0.99695 0.92789 1.21416 0.95568 0.99030 0.96157 1.21240 0.80139 0.88540 0.79607 1.90638 1.66813 1.22676 1.66515 1.48232 1.46776 1.11277 1.27428 1.21934 0.96519 0.80389 1.01688 1.22502 0.96169 0.99593 1.00602 1.21200 0.90203 0.95211 0.83612 1.86378 1.81421 1.36859 1.32227 1.21440 0.96099 0.85671 0.96684 1.42416 1.05595 1.09933 1.80050 1.19565 0.87638 0.94579 1.36046 0.91288 1.25432 0.99469 0.98238 1.02798 1.69754 1.23679 1.14145 1.53601 0.85161 0.79688 0.78515 0.76891 1.19643 1.22053 1.21908 1.21800 0.97455 0.94569 1.01079 1.21414 0.89928 0.92634 0.96142 1.21290 0.92642 1.00579 0.98876 1.22031 1.00051 0.99499 0.95691 0.89657 0.93021 0.93411 0.90184 0.90856 0.88559 0.92837 0.92612 0.87006 0.90105 0.87310 0.91125 0.90520 0.76882 0.95714 0.96251 0.78724 0.93846 0.90278 0.89566 0.90091 0.90770 0.90944 0.92952 0.90659 0.88803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.82 113.37 1.23 1.53 16 2 O -0.41 -7.42 9.00 -148.98 -1.34 -8.76 16 3 C 0.08 1.13 2.92 30.59 0.09 1.22 16 4 C -0.11 -1.63 5.66 30.59 0.17 -1.45 16 5 C -0.09 -1.93 4.55 30.60 0.14 -1.79 16 6 C -0.10 -2.02 1.69 -11.54 -0.02 -2.04 16 7 C 0.51 14.01 6.83 87.66 0.60 14.61 16 8 O -0.59 -20.49 15.47 -3.02 -0.05 -20.54 16 9 N -0.61 -15.31 2.97 -818.05 -2.43 -17.73 16 10 C 0.12 2.59 5.71 86.51 0.49 3.08 16 11 C -0.15 -4.15 4.89 30.82 0.15 -4.00 16 12 C 0.14 4.22 0.71 -10.77 -0.01 4.22 16 13 O -0.56 -17.52 11.70 -148.98 -1.74 -19.26 16 14 C 0.13 4.92 5.43 86.38 0.47 5.39 16 15 N -0.73 -34.47 5.07 -343.44 -1.74 -36.21 16 16 C -0.25 -13.22 9.99 84.03 0.84 -12.38 16 17 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 18 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 19 N -0.96 -55.16 13.06 21.65 0.28 -54.87 16 20 Si 0.97 44.69 29.55 68.60 2.03 46.72 16 21 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 22 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 23 H -0.29 -13.43 7.11 99.48 0.71 -12.73 16 24 C -0.11 -2.99 5.11 30.67 0.16 -2.83 16 25 C 0.12 3.23 6.20 86.36 0.54 3.77 16 26 C -0.10 -1.70 4.99 30.59 0.15 -1.55 16 27 C -0.14 -1.71 5.63 30.60 0.17 -1.54 16 28 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.05 0.48 8.09 -2.39 -0.02 0.46 16 30 H 0.05 0.48 7.87 -2.39 -0.02 0.47 16 31 H 0.08 0.79 7.79 -2.39 -0.02 0.77 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.05 1.43 7.43 -2.39 -0.02 1.41 16 35 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.11 1.80 6.23 -2.39 -0.01 1.78 16 37 H 0.08 1.76 7.81 -2.39 -0.02 1.74 16 38 H 0.11 1.87 5.41 -2.39 -0.01 1.86 16 39 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 40 H 0.08 2.41 6.53 -2.39 -0.02 2.39 16 41 H 0.38 11.94 8.19 -74.06 -0.61 11.33 16 42 H 0.02 0.97 8.14 -2.39 -0.02 0.95 16 43 H 0.02 0.79 8.14 -2.38 -0.02 0.77 16 44 H 0.38 18.00 5.55 -92.71 -0.51 17.49 16 45 H 0.25 14.09 8.31 -92.71 -0.77 13.32 16 46 H 0.08 2.11 8.14 -2.39 -0.02 2.10 16 47 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 48 H 0.08 2.29 7.00 -2.38 -0.02 2.27 16 49 H 0.07 1.98 7.81 -2.39 -0.02 1.97 16 50 H 0.07 1.19 7.76 -2.39 -0.02 1.17 16 51 H 0.05 1.18 7.68 -2.39 -0.02 1.17 16 52 H 0.07 0.86 7.87 -2.39 -0.02 0.84 16 53 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -67.83 401.34 0.43 -67.39 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.22 Total: 40.21 kcal Atomic # 6 Polarization: -2.58 SS G_CDS: 5.64 Total: 3.05 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -3.88 Total: -108.82 kcal Atomic # 8 Polarization: -45.42 SS G_CDS: -3.13 Total: -48.55 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.72 kcal Total: -67.83 0.43 -67.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328198117.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.632 kcal (2) G-P(sol) polarization free energy of solvation -67.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds