Wall clock time and date at job start Sat Apr 11 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42893 * 114.00113 * 2 1 4 4 H 1.08997 * 109.47067 * 29.99841 * 3 2 1 5 5 C 1.53002 * 109.47336 * 269.99877 * 3 2 1 6 6 C 1.52998 * 109.46923 * 299.99883 * 5 3 2 7 7 C 1.52991 * 109.47594 * 300.00058 * 6 5 3 8 8 C 1.53001 * 109.47278 * 59.99720 * 7 6 5 9 9 H 1.09006 * 109.46879 * 60.00283 * 8 7 6 10 10 C 1.53005 * 109.47239 * 180.02562 * 8 7 6 11 11 C 1.50695 * 109.46936 * 295.00099 * 10 8 7 12 12 O 1.21275 * 120.00584 * 0.02562 * 11 10 8 13 13 N 1.34775 * 119.99748 * 179.97438 * 11 10 8 14 14 C 1.46499 * 120.00191 * 174.89213 * 13 11 10 15 15 C 1.53007 * 112.94512 * 294.86983 * 14 13 11 16 16 C 1.52996 * 109.46891 * 303.40054 * 15 14 13 17 17 O 1.42896 * 109.47102 * 182.49460 * 16 15 14 18 18 C 1.53943 * 113.74199 * 66.46218 * 14 13 11 19 19 N 1.47810 * 86.03938 * 90.88563 * 18 14 13 20 20 C 1.36937 * 134.45970 * 204.64689 * 19 18 14 21 21 H 1.08003 * 120.00154 * 179.86461 * 20 19 18 22 22 C 1.38811 * 119.99934 * 359.86208 * 20 19 18 23 23 N 1.31625 * 120.00022 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 120.00346 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46875 * 59.99837 * 24 22 20 26 26 H 1.48492 * 109.47334 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47157 * 300.00406 * 24 22 20 28 28 C 1.47585 * 91.05020 * 24.54722 * 19 18 14 29 29 C 1.52992 * 109.47329 * 300.00477 * 8 7 6 30 30 H 1.09003 * 109.46624 * 59.99931 * 1 2 3 31 31 H 1.09001 * 109.47100 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46968 * 300.00202 * 1 2 3 33 33 H 1.08999 * 109.46611 * 60.00075 * 5 3 2 34 34 H 1.08994 * 109.47037 * 180.02562 * 5 3 2 35 35 H 1.09006 * 109.47010 * 60.00048 * 6 5 3 36 36 H 1.08998 * 109.47123 * 179.97438 * 6 5 3 37 37 H 1.09006 * 109.46934 * 300.00037 * 7 6 5 38 38 H 1.08997 * 109.47455 * 180.02562 * 7 6 5 39 39 H 1.08998 * 109.47078 * 175.00370 * 10 8 7 40 40 H 1.08993 * 109.47032 * 55.00506 * 10 8 7 41 41 H 0.97003 * 120.00174 * 354.89302 * 13 11 10 42 42 H 1.08995 * 109.47203 * 183.39797 * 15 14 13 43 43 H 1.09006 * 109.46762 * 63.39276 * 15 14 13 44 44 H 1.09003 * 109.47793 * 62.49205 * 16 15 14 45 45 H 1.09004 * 109.47093 * 302.49349 * 16 15 14 46 46 H 0.96701 * 114.00530 * 179.97438 * 17 16 15 47 47 H 1.09001 * 113.77030 * 205.14967 * 18 14 13 48 48 H 1.08996 * 113.76867 * 336.54576 * 18 14 13 49 49 H 0.96994 * 120.00162 * 180.02562 * 23 22 20 50 50 H 1.08992 * 113.77399 * 221.14991 * 28 19 18 51 51 H 1.09005 * 113.86661 * 89.76721 * 28 19 18 52 52 H 1.08998 * 109.47414 * 179.97438 * 29 8 7 53 53 H 1.09006 * 109.47446 * 299.99481 * 29 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3450 1.9993 0.5138 5 6 2.2178 1.7713 -1.4425 6 6 3.1516 0.7973 -2.1637 7 6 4.5002 0.7550 -1.4425 8 6 4.2927 0.2891 0.0001 9 1 3.8493 -0.7067 0.0000 10 6 5.6414 0.2474 0.7215 11 6 6.5186 -0.8004 0.0864 12 8 6.1061 -1.4496 -0.8513 13 7 7.7620 -1.0154 0.5597 14 6 8.5736 -2.1079 0.0174 15 6 7.9885 -3.4900 0.3147 16 6 7.8141 -3.6557 1.8256 17 8 7.3223 -4.9674 2.1074 18 6 8.9762 -1.9089 -1.4551 19 7 10.1866 -1.2445 -0.9277 20 6 11.0607 -0.3125 -1.4200 21 1 11.8914 0.0211 -0.8157 22 6 10.8792 0.2036 -2.6958 23 7 9.8666 -0.2026 -3.4321 24 14 12.0712 1.4755 -3.3672 25 1 13.4397 0.9003 -3.4042 26 1 11.6595 1.8635 -4.7401 27 1 12.0616 2.6741 -2.4907 28 6 10.0733 -1.9866 0.3430 29 6 3.3590 1.2631 0.7213 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8899 33 1 1.2569 1.8014 -1.9563 34 1 2.6615 2.7668 -1.4424 35 1 2.7082 -0.1985 -2.1637 36 1 3.2991 1.1290 -3.1914 37 1 4.9436 1.7508 -1.4424 38 1 5.1656 0.0614 -1.9565 39 1 5.4842 0.0017 1.7717 40 1 6.1248 1.2213 0.6447 41 1 8.1197 -0.4468 1.2595 42 1 8.6644 -4.2589 -0.0595 43 1 7.0199 -3.5876 -0.1757 44 1 7.1039 -2.9148 2.1929 45 1 8.7752 -3.5140 2.3200 46 1 7.1879 -5.1434 3.0487 47 1 9.1812 -2.8397 -1.9841 48 1 8.3124 -1.2425 -2.0059 49 1 9.7400 0.1577 -4.3237 50 1 10.2839 -1.3822 1.2251 51 1 10.6009 -2.9405 0.3451 52 1 3.2108 0.9310 1.7488 53 1 3.8023 2.2589 0.7214 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329669004.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:31 Heat of formation + Delta-G solvation = -122.068745 kcal Electronic energy + Delta-G solvation = -31821.415975 eV Core-core repulsion = 27693.160419 eV Total energy + Delta-G solvation = -4128.255557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.50104 -40.39483 -39.12084 -37.67044 -36.98911 -35.09404 -33.81377 -33.15613 -31.98349 -31.10696 -29.01770 -28.04403 -27.25441 -26.77658 -25.05104 -23.44873 -23.16272 -22.70802 -21.25320 -20.48849 -20.13271 -18.74244 -18.31796 -17.89608 -17.10650 -16.93270 -16.64118 -16.50300 -16.43539 -16.04503 -15.83146 -15.70366 -15.39790 -15.03224 -14.98042 -14.53798 -14.34928 -14.25195 -14.07863 -13.42279 -13.36709 -13.24785 -13.06618 -13.01377 -12.86646 -12.76329 -12.65751 -12.47768 -12.44296 -12.34182 -12.12030 -11.86134 -11.80565 -11.63996 -11.42659 -11.28835 -11.15696 -11.11801 -10.91461 -10.80854 -10.31675 -10.30583 -9.82087 -8.91257 -7.86903 -5.22976 1.43447 1.47409 1.53801 1.90547 2.34374 2.46789 2.99152 3.18357 3.31099 3.49113 3.67088 3.75901 3.80105 3.89762 4.04403 4.20301 4.23584 4.31371 4.37242 4.41986 4.46145 4.50259 4.54765 4.59816 4.60262 4.65436 4.72999 4.73695 4.76052 4.81691 4.85866 4.87585 4.89404 4.91400 5.00303 5.02407 5.09418 5.17949 5.24263 5.31457 5.34745 5.36620 5.41999 5.52803 5.59249 5.67863 5.86015 5.97012 6.43069 6.80962 6.89335 6.98270 7.56425 7.62165 8.56012 9.28235 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009512 B = 0.003632 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2942.964826 B = 7707.437462 C = 9969.814079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.404 6.404 3 C 0.087 3.913 4 H 0.083 0.917 5 C -0.136 4.136 6 C -0.108 4.108 7 C -0.118 4.118 8 C -0.055 4.055 9 H 0.056 0.944 10 C -0.128 4.128 11 C 0.505 3.495 12 O -0.571 6.571 13 N -0.691 5.691 14 C 0.155 3.845 15 C -0.110 4.110 16 C 0.094 3.906 17 O -0.595 6.595 18 C 0.163 3.837 19 N -0.632 5.632 20 C -0.231 4.231 21 H 0.091 0.909 22 C -0.069 4.069 23 N -0.953 5.953 24 Si 0.978 3.022 25 H -0.277 1.277 26 H -0.301 1.301 27 H -0.271 1.271 28 C 0.126 3.874 29 C -0.106 4.106 30 H 0.043 0.957 31 H 0.085 0.915 32 H 0.055 0.945 33 H 0.067 0.933 34 H 0.082 0.918 35 H 0.047 0.953 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.039 0.961 39 H 0.124 0.876 40 H 0.104 0.896 41 H 0.411 0.589 42 H 0.068 0.932 43 H 0.050 0.950 44 H 0.052 0.948 45 H 0.066 0.934 46 H 0.397 0.603 47 H 0.003 0.997 48 H 0.039 0.961 49 H 0.244 0.756 50 H 0.078 0.922 51 H 0.059 0.941 52 H 0.083 0.917 53 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.071 3.531 16.868 23.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.324 6.324 3 C 0.030 3.970 4 H 0.101 0.899 5 C -0.173 4.173 6 C -0.146 4.146 7 C -0.156 4.156 8 C -0.074 4.074 9 H 0.075 0.925 10 C -0.167 4.167 11 C 0.293 3.707 12 O -0.450 6.450 13 N -0.343 5.343 14 C 0.066 3.934 15 C -0.150 4.150 16 C 0.016 3.984 17 O -0.404 6.404 18 C 0.036 3.964 19 N -0.359 5.359 20 C -0.359 4.359 21 H 0.109 0.891 22 C -0.262 4.262 23 N -0.602 5.602 24 Si 0.806 3.194 25 H -0.203 1.203 26 H -0.228 1.228 27 H -0.197 1.197 28 C 0.001 3.999 29 C -0.143 4.143 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.142 0.858 40 H 0.122 0.878 41 H 0.248 0.752 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.071 0.929 45 H 0.085 0.915 46 H 0.247 0.753 47 H 0.021 0.979 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.096 0.904 51 H 0.077 0.923 52 H 0.102 0.898 53 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -16.084 3.079 15.363 22.454 hybrid contribution 0.811 0.703 -0.748 1.308 sum -15.273 3.781 14.615 21.475 Atomic orbital electron populations 1.22904 0.80452 1.03153 1.00602 1.87969 1.20565 1.28745 1.95093 1.22226 0.95088 0.84528 0.95150 0.89867 1.22022 0.99565 0.99262 0.96471 1.21308 0.95380 0.99607 0.98274 1.21615 0.97150 1.00177 0.96621 1.20654 0.93349 0.99702 0.93716 0.92501 1.21794 0.94971 0.98053 1.01931 1.21350 0.82094 0.84379 0.82853 1.90669 1.74516 1.50931 1.28898 1.45441 1.14467 1.33281 1.41135 1.21704 0.90705 0.86137 0.94844 1.21560 1.01223 0.95166 0.97013 1.21971 0.98504 0.83746 0.94171 1.86446 1.88729 1.33121 1.32082 1.22369 0.87481 0.93200 0.93309 1.46293 1.30384 1.44201 1.14995 1.19388 1.05274 1.13140 0.98136 0.89136 1.25676 1.00324 1.02907 0.97312 1.70096 1.32357 1.47469 1.10243 0.85159 0.78262 0.79117 0.76817 1.20329 1.22778 1.19657 1.23026 0.90760 0.95837 0.90241 1.21718 0.93096 1.00220 0.99249 0.93812 0.89637 0.92635 0.91439 0.89957 0.93424 0.93250 0.92616 0.94254 0.85814 0.87821 0.75236 0.91337 0.93096 0.92947 0.91547 0.75313 0.97901 0.94233 0.94753 0.90383 0.92328 0.89840 0.88866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 10.82 113.37 1.23 1.61 16 2 O -0.40 -9.02 9.00 -148.98 -1.34 -10.36 16 3 C 0.09 1.59 2.92 30.60 0.09 1.68 16 4 H 0.08 1.09 7.79 -2.39 -0.02 1.07 16 5 C -0.14 -2.70 5.63 30.59 0.17 -2.53 16 6 C -0.11 -3.01 5.78 30.59 0.18 -2.83 16 7 C -0.12 -3.71 4.94 30.59 0.15 -3.56 16 8 C -0.06 -1.44 1.69 -10.79 -0.02 -1.46 16 9 H 0.06 1.83 7.50 -2.38 -0.02 1.81 16 10 C -0.13 -3.06 5.18 29.85 0.15 -2.91 16 11 C 0.50 17.51 7.11 87.66 0.62 18.13 16 12 O -0.57 -25.53 11.95 -3.01 -0.04 -25.56 16 13 N -0.69 -22.48 4.64 -427.56 -1.98 -24.46 16 14 C 0.15 5.86 0.61 5.36 0.00 5.87 16 15 C -0.11 -3.81 4.87 30.60 0.15 -3.66 16 16 C 0.09 2.36 6.80 71.98 0.49 2.85 16 17 O -0.60 -14.89 13.66 -148.98 -2.03 -16.92 16 18 C 0.16 8.51 6.40 86.44 0.55 9.07 16 19 N -0.63 -32.41 3.70 -715.48 -2.65 -35.06 16 20 C -0.23 -12.91 10.70 84.03 0.90 -12.01 16 21 H 0.09 4.70 7.83 -2.91 -0.02 4.67 16 22 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 23 N -0.95 -60.74 11.39 21.65 0.25 -60.49 16 24 Si 0.98 46.55 29.55 68.60 2.03 48.58 16 25 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 26 H -0.30 -14.73 7.11 99.48 0.71 -14.02 16 27 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 28 C 0.13 4.74 7.95 86.49 0.69 5.43 16 29 C -0.11 -1.89 4.94 30.59 0.15 -1.74 16 30 H 0.04 0.60 7.87 -2.39 -0.02 0.58 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 0.63 8.08 -2.39 -0.02 0.62 16 33 H 0.07 1.21 7.87 -2.39 -0.02 1.19 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.05 1.49 7.68 -2.38 -0.02 1.47 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.06 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.04 1.63 5.95 -2.39 -0.01 1.62 16 39 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 41 H 0.41 10.56 8.66 -92.71 -0.80 9.76 16 42 H 0.07 2.44 8.11 -2.39 -0.02 2.42 16 43 H 0.05 2.07 7.10 -2.38 -0.02 2.05 16 44 H 0.05 1.21 7.78 -2.39 -0.02 1.19 16 45 H 0.07 1.39 7.91 -2.38 -0.02 1.37 16 46 H 0.40 5.40 9.12 -74.06 -0.68 4.72 16 47 H 0.00 0.18 8.10 -2.39 -0.02 0.16 16 48 H 0.04 2.43 6.39 -2.39 -0.02 2.41 16 49 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 50 H 0.08 2.44 8.09 -2.39 -0.02 2.42 16 51 H 0.06 2.10 8.08 -2.38 -0.02 2.08 16 52 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 53 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -82.38 410.40 -0.38 -82.76 By element: Atomic # 1 Polarization: 31.75 SS G_CDS: -0.58 Total: 31.17 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: 5.97 Total: 10.35 kcal Atomic # 7 Polarization: -115.63 SS G_CDS: -4.39 Total: -120.02 kcal Atomic # 8 Polarization: -49.43 SS G_CDS: -3.41 Total: -52.84 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -82.38 -0.38 -82.76 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329669004.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.307 kcal (2) G-P(sol) polarization free energy of solvation -82.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds