Wall clock time and date at job start Sat Apr 11 2020 06:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99885 * 2 1 4 4 C 1.53001 * 109.47027 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47058 * 174.67452 * 4 3 2 6 6 C 1.50695 * 110.43720 * 64.19059 * 5 4 3 7 7 O 1.21286 * 120.00233 * 114.99674 * 6 5 4 8 8 N 1.34779 * 120.00244 * 294.99746 * 6 5 4 9 9 C 1.46498 * 120.00126 * 178.06873 * 8 6 5 10 10 C 1.52993 * 112.94504 * 293.67366 * 9 8 6 11 11 C 1.53003 * 109.47506 * 296.84433 * 10 9 8 12 12 O 1.42900 * 109.47498 * 184.97248 * 11 10 9 13 13 C 1.53947 * 113.74054 * 161.94373 * 9 8 6 14 14 N 1.47581 * 86.11473 * 222.05053 * 13 9 8 15 15 C 1.36944 * 134.48870 * 204.64005 * 14 13 9 16 16 H 1.07999 * 119.99276 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99976 * 359.97438 * 15 14 13 18 18 N 1.31615 * 119.99943 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99814 * 179.97438 * 17 15 14 20 20 H 1.48499 * 109.46794 * 89.99784 * 19 17 15 21 21 H 1.48495 * 109.46966 * 209.99926 * 19 17 15 22 22 H 1.48499 * 109.47100 * 329.99892 * 19 17 15 23 23 C 1.47577 * 91.01781 * 24.63823 * 14 13 9 24 24 C 1.54891 * 110.48405 * 301.50707 * 5 4 3 25 25 C 1.54891 * 102.74820 * 203.37970 * 24 5 4 26 26 C 1.54264 * 104.19708 * 37.94246 * 25 24 5 27 27 C 1.53879 * 106.59854 * 336.39106 * 26 25 24 28 28 H 1.09003 * 109.46843 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47494 * 299.99680 * 1 2 3 30 30 H 1.08999 * 109.47197 * 60.00842 * 1 2 3 31 31 H 1.09004 * 109.47251 * 59.99680 * 3 2 1 32 32 H 1.09004 * 109.47055 * 299.99875 * 3 2 1 33 33 H 1.09000 * 109.47188 * 54.67296 * 4 3 2 34 34 H 1.08997 * 109.47319 * 294.67351 * 4 3 2 35 35 H 0.96998 * 119.99645 * 358.07543 * 8 6 5 36 36 H 1.09000 * 109.47588 * 56.84816 * 10 9 8 37 37 H 1.08999 * 109.47306 * 176.84683 * 10 9 8 38 38 H 1.08995 * 109.47356 * 304.97703 * 11 10 9 39 39 H 1.09006 * 109.46546 * 64.97578 * 11 10 9 40 40 H 0.96698 * 114.00170 * 180.02562 * 12 11 10 41 41 H 1.09000 * 113.76694 * 336.34401 * 13 9 8 42 42 H 1.09000 * 113.77448 * 107.74510 * 13 9 8 43 43 H 0.97003 * 119.99698 * 180.02562 * 18 17 15 44 44 H 1.09000 * 113.76853 * 221.05959 * 23 14 13 45 45 H 1.08997 * 113.87182 * 89.67546 * 23 14 13 46 46 H 1.08998 * 110.75444 * 85.06742 * 24 5 4 47 47 H 1.09002 * 110.75995 * 321.69611 * 24 5 4 48 48 H 1.09000 * 110.48662 * 279.26381 * 25 24 5 49 49 H 1.08999 * 110.48766 * 156.62545 * 25 24 5 50 50 H 1.09005 * 110.03343 * 95.67234 * 26 25 24 51 51 H 1.08995 * 110.03591 * 217.10364 * 26 25 24 52 52 H 1.09004 * 110.03435 * 119.28081 * 27 26 25 53 53 H 1.08993 * 110.03453 * 240.71436 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1573 2.5761 -0.1332 6 6 3.8182 3.4217 1.0671 7 8 4.6974 3.7911 1.8166 8 7 2.5380 3.7676 1.3080 9 6 2.2031 4.5539 2.4978 10 6 2.4449 3.7931 3.8030 11 6 1.5265 2.5707 3.8586 12 8 1.6682 1.9255 5.1258 13 6 0.8255 5.2368 2.4219 14 7 1.4890 6.4154 3.0124 15 6 1.0625 7.4876 3.7498 16 1 1.7700 8.2378 4.0708 17 6 -0.2791 7.6102 4.0846 18 7 -1.1413 6.6962 3.6929 19 14 -0.8607 9.0725 5.0911 20 1 -1.2430 10.1804 4.1791 21 1 -2.0358 8.6755 5.9076 22 1 0.2345 9.5241 5.9866 23 6 2.7965 5.9743 2.4893 24 6 3.6762 3.2617 -1.4362 25 6 4.7974 4.2938 -1.7134 26 6 6.0938 3.5620 -1.3088 27 6 5.6868 2.4698 -0.3042 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8463 -0.8900 33 1 3.8511 0.5634 -0.8375 34 1 3.8634 0.7285 0.9347 35 1 1.8385 3.4957 0.6935 36 1 3.4846 3.4687 3.8473 37 1 2.2319 4.4463 4.6492 38 1 0.4920 2.8871 3.7257 39 1 1.7987 1.8754 3.0644 40 1 1.1141 1.1401 5.2314 41 1 0.4701 5.3969 1.4039 42 1 0.0746 4.7846 3.0697 43 1 -2.0788 6.7821 3.9266 44 1 3.6192 6.1110 3.1910 45 1 3.0219 6.3503 1.4913 46 1 2.7207 3.7622 -1.2792 47 1 3.6062 2.5396 -2.2496 48 1 4.6555 5.1848 -1.1017 49 1 4.8215 4.5561 -2.7711 50 1 6.5561 3.1090 -2.1859 51 1 6.7865 4.2610 -0.8402 52 1 5.9515 1.4868 -0.6937 53 1 6.1819 2.6388 0.6520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329717762.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:34 Heat of formation + Delta-G solvation = -109.346904 kcal Electronic energy + Delta-G solvation = -32891.191871 eV Core-core repulsion = 28763.487975 eV Total energy + Delta-G solvation = -4127.703896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.06220 -40.29087 -38.74855 -37.83886 -37.73138 -35.43076 -34.14098 -33.10600 -31.85155 -29.66660 -29.09115 -28.73939 -26.93519 -26.70138 -25.37270 -23.98740 -23.48607 -22.99143 -21.33071 -20.33172 -20.13232 -18.80199 -18.49310 -17.79010 -17.37635 -17.18055 -16.89180 -16.78435 -16.48482 -16.15414 -15.85487 -15.75851 -15.54040 -15.22394 -14.98694 -14.89204 -14.43815 -14.20439 -13.96276 -13.74292 -13.32858 -13.28440 -13.13922 -12.94940 -12.83146 -12.65152 -12.56735 -12.35081 -12.31040 -12.12120 -12.07905 -12.02585 -11.94182 -11.76905 -11.73634 -11.56569 -11.38683 -11.27174 -10.99298 -10.89091 -10.56817 -10.50008 -10.01640 -8.98413 -7.95098 -5.28136 1.44936 1.46315 1.54941 1.68557 2.08436 2.47828 2.78978 3.09592 3.24091 3.35376 3.46429 3.57388 3.62432 3.76987 4.00749 4.06138 4.14333 4.20112 4.26227 4.26946 4.35472 4.39027 4.51595 4.54004 4.57108 4.59959 4.63993 4.65720 4.68211 4.70221 4.81037 4.82375 4.90151 4.92536 4.97239 5.04459 5.08885 5.11429 5.11724 5.13542 5.18795 5.19441 5.32433 5.34985 5.44548 5.53636 5.69096 5.87354 6.22522 6.58704 6.86317 6.88645 7.31374 7.54652 8.47685 9.21725 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011201 B = 0.003915 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2499.164554 B = 7149.983275 C = 8189.629310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.406 6.406 3 C 0.041 3.959 4 C -0.094 4.094 5 C -0.074 4.074 6 C 0.524 3.476 7 O -0.567 6.567 8 N -0.707 5.707 9 C 0.153 3.847 10 C -0.087 4.087 11 C 0.093 3.907 12 O -0.590 6.590 13 C 0.173 3.827 14 N -0.629 5.629 15 C -0.239 4.239 16 H 0.078 0.922 17 C -0.054 4.054 18 N -0.946 5.946 19 Si 0.976 3.024 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.274 1.274 23 C 0.128 3.872 24 C -0.110 4.110 25 C -0.128 4.128 26 C -0.119 4.119 27 C -0.107 4.107 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.054 0.946 31 H 0.047 0.953 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.062 0.938 35 H 0.408 0.592 36 H 0.063 0.937 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.396 0.604 41 H 0.032 0.968 42 H 0.061 0.939 43 H 0.252 0.748 44 H 0.037 0.963 45 H 0.040 0.960 46 H 0.070 0.930 47 H 0.110 0.890 48 H 0.038 0.962 49 H 0.088 0.912 50 H 0.087 0.913 51 H 0.048 0.952 52 H 0.095 0.905 53 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.126 -15.741 -14.149 22.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.325 6.325 3 C -0.036 4.036 4 C -0.132 4.132 5 C -0.077 4.077 6 C 0.312 3.688 7 O -0.445 6.445 8 N -0.362 5.362 9 C 0.065 3.935 10 C -0.126 4.126 11 C 0.015 3.985 12 O -0.399 6.399 13 C 0.047 3.953 14 N -0.356 5.356 15 C -0.367 4.367 16 H 0.096 0.904 17 C -0.248 4.248 18 N -0.594 5.594 19 Si 0.804 3.196 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.199 1.199 23 C 0.002 3.998 24 C -0.148 4.148 25 C -0.166 4.166 26 C -0.157 4.157 27 C -0.145 4.145 28 H 0.116 0.884 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.125 0.875 34 H 0.081 0.919 35 H 0.247 0.753 36 H 0.082 0.918 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.076 0.924 40 H 0.246 0.754 41 H 0.050 0.950 42 H 0.079 0.921 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.057 0.943 46 H 0.088 0.912 47 H 0.128 0.872 48 H 0.057 0.943 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.067 0.933 52 H 0.113 0.887 53 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.056 -14.960 -13.339 21.249 hybrid contribution -1.385 1.006 0.570 1.804 sum 5.671 -13.954 -12.769 19.747 Atomic orbital electron populations 1.22939 0.79747 1.03846 1.00840 1.87818 1.21074 1.28019 1.95583 1.23021 0.94090 0.85232 1.01228 1.21426 0.93080 0.94272 1.04408 1.21618 0.98582 0.94417 0.93071 1.20977 0.81749 0.79462 0.86603 1.90660 1.47940 1.55741 1.50197 1.46343 1.09072 1.55302 1.25501 1.22217 0.97211 0.88814 0.85224 1.21165 0.99728 0.96067 0.95659 1.21969 0.98224 0.93181 0.85082 1.86435 1.69908 1.47184 1.36346 1.22421 0.91924 0.85008 0.95939 1.45923 1.04696 1.25393 1.59564 1.19299 0.92866 0.99638 1.24923 0.90446 1.25506 0.95639 1.01388 1.02255 1.69926 1.02224 1.36201 1.51014 0.85119 0.77553 0.78716 0.78168 1.21111 1.21610 1.19900 1.22819 0.89241 0.91361 0.96401 1.22731 0.98356 0.98428 0.95269 1.22380 0.94834 0.97462 1.01916 1.22094 0.97397 0.97158 0.99032 1.22149 0.91568 1.00587 1.00191 0.88350 0.94045 0.92739 0.93481 0.90878 0.87508 0.91926 0.75290 0.91845 0.92936 0.93605 0.92438 0.75439 0.95019 0.92097 0.93932 0.94483 0.94283 0.91164 0.87152 0.94265 0.89372 0.89398 0.93286 0.88678 0.92378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -7.86 10.70 -148.98 -1.59 -9.46 16 3 C 0.04 0.72 4.55 71.98 0.33 1.05 16 4 C -0.09 -1.64 4.56 30.60 0.14 -1.50 16 5 C -0.07 -1.49 0.55 -51.85 -0.03 -1.51 16 6 C 0.52 15.38 5.92 87.65 0.52 15.90 16 7 O -0.57 -21.43 13.74 -3.05 -0.04 -21.47 16 8 N -0.71 -20.77 3.64 -427.58 -1.56 -22.32 16 9 C 0.15 5.87 0.66 5.36 0.00 5.87 16 10 C -0.09 -3.48 4.92 30.59 0.15 -3.33 16 11 C 0.09 3.06 6.84 71.98 0.49 3.55 16 12 O -0.59 -18.97 13.66 -148.98 -2.04 -21.01 16 13 C 0.17 7.82 6.61 86.48 0.57 8.40 16 14 N -0.63 -32.84 3.54 -716.20 -2.54 -35.37 16 15 C -0.24 -13.67 10.70 84.03 0.90 -12.77 16 16 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 17 C -0.05 -3.05 5.50 84.86 0.47 -2.58 16 18 N -0.95 -55.01 11.38 21.65 0.25 -54.76 16 19 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 22 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 23 C 0.13 5.77 7.52 86.48 0.65 6.42 16 24 C -0.11 -1.76 4.57 31.89 0.15 -1.62 16 25 C -0.13 -2.35 6.61 31.67 0.21 -2.14 16 26 C -0.12 -2.15 6.80 31.32 0.21 -1.93 16 27 C -0.11 -2.12 5.79 31.32 0.18 -1.94 16 28 H 0.10 1.16 8.14 -2.39 -0.02 1.15 16 29 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.96 4.65 -2.39 -0.01 0.95 16 32 H 0.07 1.02 6.85 -2.39 -0.02 1.00 16 33 H 0.11 1.43 8.04 -2.39 -0.02 1.41 16 34 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.41 9.85 5.41 -92.71 -0.50 9.35 16 36 H 0.06 2.63 6.95 -2.39 -0.02 2.61 16 37 H 0.05 2.48 8.02 -2.39 -0.02 2.46 16 38 H 0.05 1.56 6.86 -2.39 -0.02 1.54 16 39 H 0.06 1.63 7.17 -2.38 -0.02 1.61 16 40 H 0.40 8.20 9.12 -74.06 -0.68 7.53 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.06 3.03 5.98 -2.39 -0.01 3.02 16 43 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 44 H 0.04 1.76 8.10 -2.39 -0.02 1.74 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.07 1.16 6.92 -2.39 -0.02 1.14 16 47 H 0.11 1.17 8.06 -2.39 -0.02 1.15 16 48 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 49 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 50 H 0.09 1.14 8.14 -2.38 -0.02 1.13 16 51 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 52 H 0.09 1.38 7.77 -2.38 -0.02 1.36 16 53 H 0.06 1.51 6.80 -2.39 -0.02 1.49 16 Total: -1.00 -73.29 404.90 0.44 -72.86 By element: Atomic # 1 Polarization: 30.59 SS G_CDS: -0.26 Total: 30.33 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.19 Total: 13.44 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -3.85 Total: -112.46 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -3.67 Total: -51.94 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -73.29 0.44 -72.86 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329717762.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.491 kcal (2) G-P(sol) polarization free energy of solvation -73.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds