Wall clock time and date at job start Sat Apr 11 2020 06:13:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.20825 * 120.00154 * 2 1 4 4 O 1.34226 * 119.99916 * 180.02562 * 2 1 3 5 5 C 1.45201 * 117.00317 * 179.97438 * 4 2 1 6 6 C 1.52996 * 109.47792 * 179.97438 * 5 4 2 7 7 C 1.53004 * 109.46732 * 59.99875 * 6 5 4 8 8 C 1.52997 * 109.46918 * 300.00270 * 6 5 4 9 9 C 1.53000 * 109.47433 * 179.97438 * 6 5 4 10 10 C 1.50695 * 109.47141 * 180.02562 * 9 6 5 11 11 O 1.21283 * 120.00244 * 359.97438 * 10 9 6 12 12 N 1.34774 * 119.99913 * 180.02562 * 10 9 6 13 13 C 1.46506 * 120.00150 * 179.97438 * 12 10 9 14 14 C 1.52989 * 109.47243 * 180.02562 * 13 12 10 15 15 C 1.53349 * 109.42090 * 295.12458 * 14 13 12 16 16 C 1.53189 * 109.15350 * 178.67324 * 15 14 13 17 17 N 1.46931 * 108.89061 * 54.57922 * 16 15 14 18 18 C 1.36938 * 120.62972 * 126.29441 * 17 16 15 19 19 H 1.08005 * 120.00173 * 331.83979 * 18 17 16 20 20 C 1.38813 * 119.99936 * 151.83343 * 18 17 16 21 21 N 1.31618 * 120.00004 * 343.08512 * 20 18 17 22 22 Si 1.86806 * 119.99953 * 163.08402 * 20 18 17 23 23 H 1.48500 * 109.46925 * 0.02562 * 22 20 18 24 24 H 1.48495 * 109.46793 * 120.00276 * 22 20 18 25 25 H 1.48498 * 109.46814 * 240.00176 * 22 20 18 26 26 C 1.46927 * 118.74004 * 306.32424 * 17 16 15 27 27 C 1.53047 * 109.46104 * 175.00010 * 14 13 12 28 28 H 1.09006 * 109.46893 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46639 * 299.99562 * 1 2 3 30 30 H 1.08997 * 109.47765 * 59.99667 * 1 2 3 31 31 H 1.09000 * 109.47181 * 59.99208 * 5 4 2 32 32 H 1.09010 * 109.46713 * 299.99944 * 5 4 2 33 33 H 1.09000 * 109.46924 * 180.02562 * 7 6 5 34 34 H 1.09007 * 109.47008 * 299.99783 * 7 6 5 35 35 H 1.08998 * 109.47637 * 60.00442 * 7 6 5 36 36 H 1.09000 * 109.46776 * 299.98966 * 8 6 5 37 37 H 1.08990 * 109.47600 * 59.99563 * 8 6 5 38 38 H 1.09007 * 109.46646 * 179.97438 * 8 6 5 39 39 H 1.09004 * 109.46709 * 60.00367 * 9 6 5 40 40 H 1.09000 * 109.47191 * 300.00558 * 9 6 5 41 41 H 0.97003 * 120.00078 * 0.02562 * 12 10 9 42 42 H 1.09000 * 109.46657 * 59.99515 * 13 12 10 43 43 H 1.09008 * 109.46786 * 300.00364 * 13 12 10 44 44 H 1.08997 * 109.46256 * 55.02918 * 14 13 12 45 45 H 1.09001 * 109.68292 * 58.70967 * 15 14 13 46 46 H 1.08994 * 109.47524 * 298.51791 * 15 14 13 47 47 H 1.09000 * 109.58714 * 294.72587 * 16 15 14 48 48 H 1.09003 * 109.58688 * 174.43867 * 16 15 14 49 49 H 0.96996 * 119.99787 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58255 * 173.39566 * 26 17 16 51 51 H 1.09000 * 109.58150 * 293.67300 * 26 17 16 52 52 H 1.09000 * 109.49464 * 61.43304 * 27 14 13 53 53 H 1.08999 * 109.52117 * 301.35057 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1112 1.0464 0.0000 4 8 2.1781 -1.1624 -0.0005 5 6 3.6281 -1.0865 -0.0011 6 6 4.2130 -2.5003 -0.0010 7 6 3.7409 -3.2475 -1.2499 8 6 3.7419 -3.2470 1.2486 9 6 5.7409 -2.4202 -0.0022 10 6 6.3169 -3.8128 -0.0027 11 8 5.5781 -4.7746 -0.0017 12 7 7.6530 -3.9893 -0.0033 13 6 8.2130 -5.3432 -0.0032 14 6 9.7408 -5.2631 -0.0033 15 6 10.2178 -4.6232 -1.3127 16 6 11.7458 -4.5157 -1.2922 17 7 12.3127 -5.8450 -1.0267 18 6 13.2500 -6.3843 -1.8668 19 1 13.2628 -6.1071 -2.9106 20 6 14.1837 -7.2871 -1.3769 21 7 14.3940 -7.3782 -0.0809 22 14 15.1417 -8.3728 -2.5572 23 1 14.7231 -8.0784 -3.9512 24 1 16.5945 -8.1029 -2.4095 25 1 14.8695 -9.7997 -2.2489 26 6 11.8543 -6.5850 0.1570 27 6 10.3253 -6.6719 0.1225 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 3.9645 -0.5545 0.8888 32 1 3.9637 -0.5542 -0.8912 33 1 4.1572 -4.2549 -1.2496 34 1 2.6524 -3.3046 -1.2494 35 1 4.0765 -2.7156 -2.1402 36 1 4.0782 -2.7147 2.1383 37 1 2.6534 -3.3040 1.2490 38 1 4.1582 -4.2544 1.2484 39 1 6.0775 -1.8878 0.8874 40 1 6.0762 -1.8884 -0.8926 41 1 8.2439 -3.2201 -0.0030 42 1 7.8766 -5.8755 -0.8929 43 1 7.8774 -5.8751 0.8871 44 1 10.0727 -4.6558 0.8388 45 1 9.7845 -3.6282 -1.4143 46 1 9.9080 -5.2430 -2.1540 47 1 12.0530 -3.8242 -0.5076 48 1 12.0997 -4.1537 -2.2575 49 1 15.0461 -8.0093 0.2615 50 1 12.2778 -7.5893 0.1467 51 1 12.1726 -6.0635 1.0597 52 1 10.0142 -7.2725 -0.7323 53 1 9.9664 -7.1344 1.0420 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465126693.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:00 Heat of formation + Delta-G solvation = -144.345932 kcal Electronic energy + Delta-G solvation = -29986.351934 eV Core-core repulsion = 25857.130366 eV Total energy + Delta-G solvation = -4129.221568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.61446 -41.01094 -39.48261 -38.20554 -36.70588 -35.99330 -34.46015 -32.58530 -31.44184 -31.26060 -29.72018 -28.14218 -27.87629 -27.57472 -25.58002 -23.83126 -22.79319 -22.27542 -21.51000 -20.72053 -20.09451 -18.73114 -18.58983 -17.95887 -17.56795 -17.02256 -16.81588 -16.67348 -16.52158 -15.75774 -15.52151 -15.32801 -15.30075 -15.05874 -14.84420 -14.78066 -14.08544 -14.05616 -13.93314 -13.82966 -13.65510 -13.49093 -13.32905 -13.07847 -13.01329 -12.84333 -12.66457 -12.58942 -12.27907 -12.21351 -12.10112 -11.98246 -11.94770 -11.83704 -11.78382 -11.58895 -11.57209 -11.45350 -11.20391 -11.07673 -10.56242 -10.44776 -9.94169 -8.66242 -7.87347 -5.32165 1.20232 1.44980 1.47404 1.57367 1.72988 1.73297 2.35423 2.51115 3.27333 3.58218 3.70187 3.72418 3.75121 3.87104 3.96106 3.98497 4.09286 4.14957 4.34866 4.36749 4.44626 4.54584 4.55600 4.55848 4.58312 4.64400 4.71587 4.74978 4.78114 4.85338 4.94915 4.95288 4.96234 5.03188 5.08848 5.08921 5.15174 5.24293 5.30329 5.32481 5.39491 5.44939 5.50434 5.51668 5.56256 5.66648 5.69802 5.80709 6.40334 6.65539 6.75797 7.16245 7.37229 7.88843 8.39144 9.18794 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.035443 B = 0.001661 C = 0.001640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.803187 B =16855.491775 C =17065.047074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.455 3.545 3 O -0.558 6.558 4 O -0.354 6.354 5 C 0.077 3.923 6 C -0.040 4.040 7 C -0.148 4.148 8 C -0.148 4.148 9 C -0.130 4.130 10 C 0.512 3.488 11 O -0.566 6.566 12 N -0.718 5.718 13 C 0.138 3.862 14 C -0.078 4.078 15 C -0.113 4.113 16 C 0.138 3.862 17 N -0.612 5.612 18 C -0.261 4.261 19 H 0.064 0.936 20 C -0.051 4.051 21 N -0.935 5.935 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.177 3.823 27 C -0.122 4.122 28 H 0.106 0.894 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.054 0.946 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.413 0.587 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.018 0.982 48 H 0.050 0.950 49 H 0.249 0.751 50 H 0.049 0.951 51 H -0.002 1.002 52 H 0.049 0.951 53 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.173 14.428 1.625 30.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.301 3.699 3 O -0.449 6.449 4 O -0.271 6.271 5 C 0.003 3.997 6 C -0.040 4.040 7 C -0.205 4.205 8 C -0.205 4.205 9 C -0.170 4.170 10 C 0.300 3.700 11 O -0.446 6.446 12 N -0.371 5.371 13 C 0.014 3.986 14 C -0.097 4.097 15 C -0.152 4.152 16 C 0.013 3.987 17 N -0.336 5.336 18 C -0.392 4.392 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.581 5.581 22 Si 0.792 3.208 23 H -0.192 1.192 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.051 3.949 27 C -0.162 4.162 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.085 0.915 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.250 0.750 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.105 0.895 46 H 0.067 0.933 47 H 0.036 0.964 48 H 0.068 0.932 49 H 0.058 0.942 50 H 0.068 0.932 51 H 0.016 0.984 52 H 0.067 0.933 53 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -27.360 13.934 1.681 30.749 hybrid contribution 1.562 -0.439 -0.350 1.660 sum -25.797 13.495 1.331 29.144 Atomic orbital electron populations 1.21734 0.83784 1.07276 1.07072 1.24757 0.93688 0.80837 0.70608 1.90680 1.71994 1.34414 1.47854 1.86522 1.22425 1.34879 1.83229 1.23135 0.76310 0.97350 1.02895 1.20238 0.93124 0.92867 0.97795 1.22004 1.01438 1.01467 0.95611 1.21997 1.01440 1.01467 0.95566 1.21702 0.94483 0.93789 1.07005 1.20896 0.81899 0.92104 0.75085 1.90599 1.59107 1.44189 1.50669 1.46014 1.06893 1.09381 1.74770 1.21198 0.92260 0.83856 1.01251 1.21194 0.92817 0.96993 0.98701 1.21974 0.95846 1.00731 0.96647 1.21087 0.93055 0.86293 0.98253 1.44330 1.45739 1.15340 1.28166 1.19540 1.06680 1.22191 0.90746 0.91799 1.25763 0.98437 1.03298 0.97115 1.70180 1.36632 1.38385 1.12891 0.85264 0.77862 0.78537 0.79138 1.19186 1.21908 1.21759 1.20565 0.90613 0.96354 0.87348 1.21969 0.96845 0.96418 1.00943 0.87515 0.86342 0.86371 0.90699 0.90753 0.91503 0.92479 0.92784 0.92705 0.92487 0.91475 0.86246 0.86321 0.75013 0.92752 0.92156 0.90559 0.89476 0.93266 0.96408 0.93154 0.94172 0.93227 0.98363 0.93258 0.91379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 10.42 71.24 0.74 -0.01 16 2 C 0.46 6.88 8.07 71.24 0.57 7.46 16 3 O -0.56 -12.51 16.85 21.97 0.37 -12.14 16 4 O -0.35 -5.61 8.88 -51.37 -0.46 -6.07 16 5 C 0.08 1.14 4.32 71.98 0.31 1.45 16 6 C -0.04 -0.62 0.60 -52.18 -0.03 -0.65 16 7 C -0.15 -2.69 8.03 71.98 0.58 -2.11 16 8 C -0.15 -2.64 8.03 71.98 0.58 -2.06 16 9 C -0.13 -1.66 4.77 29.85 0.14 -1.52 16 10 C 0.51 10.19 7.24 87.66 0.63 10.82 16 11 O -0.57 -15.39 11.35 -3.04 -0.03 -15.42 16 12 N -0.72 -13.46 5.27 -463.06 -2.44 -15.90 16 13 C 0.14 3.37 5.06 86.37 0.44 3.81 16 14 C -0.08 -2.19 2.19 -10.66 -0.02 -2.22 16 15 C -0.11 -3.30 5.27 30.77 0.16 -3.14 16 16 C 0.14 5.37 6.50 86.36 0.56 5.93 16 17 N -0.61 -30.12 2.99 -699.08 -2.09 -32.21 16 18 C -0.26 -14.33 9.58 84.03 0.81 -13.53 16 19 H 0.06 3.44 7.89 -2.91 -0.02 3.41 16 20 C -0.05 -2.84 4.92 84.86 0.42 -2.42 16 21 N -0.93 -55.26 11.20 21.65 0.24 -55.02 16 22 Si 0.96 44.96 29.59 68.60 2.03 46.99 16 23 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 24 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 25 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 26 C 0.18 8.35 5.30 86.36 0.46 8.81 16 27 C -0.12 -4.35 5.36 30.67 0.16 -4.19 16 28 H 0.11 0.27 8.14 -2.38 -0.02 0.25 16 29 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.12 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.07 1.05 8.13 -2.39 -0.02 1.03 16 32 H 0.07 1.05 8.14 -2.38 -0.02 1.04 16 33 H 0.07 1.56 5.51 -2.39 -0.01 1.55 16 34 H 0.06 1.03 7.68 -2.38 -0.02 1.01 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.06 1.01 7.68 -2.39 -0.02 0.99 16 38 H 0.07 1.54 5.51 -2.38 -0.01 1.53 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.41 5.65 7.65 -92.71 -0.71 4.94 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 44 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.09 1.88 7.16 -2.39 -0.02 1.86 16 46 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 47 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 48 H 0.05 1.94 7.93 -2.39 -0.02 1.92 16 49 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 50 H 0.05 2.70 6.06 -2.39 -0.01 2.69 16 51 H 0.00 -0.09 8.14 -2.39 -0.02 -0.10 16 52 H 0.05 1.83 8.14 -2.39 -0.02 1.82 16 53 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -73.37 412.90 4.30 -69.07 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 0.17 Total: 14.26 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: 6.51 Total: 6.43 kcal Atomic # 7 Polarization: -98.83 SS G_CDS: -4.29 Total: -103.12 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.12 Total: -33.63 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -73.37 4.30 -69.07 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465126693.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.278 kcal (2) G-P(sol) polarization free energy of solvation -73.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds