Wall clock time and date at job start Sat Apr 11 2020 06:13:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42896 * 114.00116 * 2 1 4 4 H 1.08998 * 109.47237 * 30.00537 * 3 2 1 5 5 C 1.50699 * 109.47208 * 149.99992 * 3 2 1 6 6 O 1.21283 * 119.99888 * 32.27115 * 5 3 2 7 7 N 1.34770 * 120.00346 * 212.26588 * 5 3 2 8 8 C 1.46928 * 120.63175 * 356.45887 * 7 5 3 9 9 C 1.53188 * 108.77711 * 233.63016 * 8 7 5 10 10 C 1.53046 * 109.30827 * 305.35889 * 9 8 7 11 11 C 1.53047 * 109.53641 * 61.36921 * 10 9 8 12 12 H 1.09000 * 109.49523 * 58.58127 * 11 10 9 13 13 N 1.46504 * 109.49515 * 178.65034 * 11 10 9 14 14 C 1.36936 * 120.00232 * 59.93374 * 13 11 10 15 15 H 1.08000 * 119.99854 * 322.01252 * 14 13 11 16 16 C 1.38804 * 119.99791 * 142.01313 * 14 13 11 17 17 N 1.31620 * 120.00366 * 339.57279 * 16 14 13 18 18 Si 1.86808 * 119.99697 * 159.57644 * 16 14 13 19 19 H 1.48495 * 109.47096 * 59.99934 * 18 16 14 20 20 H 1.48504 * 109.46927 * 179.97438 * 18 16 14 21 21 H 1.48495 * 109.47004 * 299.99593 * 18 16 14 22 22 C 1.46497 * 119.99556 * 239.93222 * 13 11 10 23 23 C 1.53004 * 109.47157 * 84.62331 * 22 13 11 24 24 O 1.42896 * 109.47247 * 64.99783 * 23 22 13 25 25 C 1.46995 * 120.61783 * 176.47522 * 7 5 3 26 26 C 1.53003 * 109.47321 * 270.00131 * 3 2 1 27 27 C 1.53775 * 113.61417 * 155.76166 * 26 3 2 28 28 C 1.53781 * 87.08232 * 220.01949 * 27 26 3 29 29 C 1.53782 * 87.08062 * 25.43550 * 28 27 26 30 30 H 1.09000 * 109.47151 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47070 * 299.99776 * 1 2 3 32 32 H 1.09000 * 109.47285 * 59.99596 * 1 2 3 33 33 H 1.09001 * 109.58708 * 113.83896 * 8 7 5 34 34 H 1.09007 * 109.69860 * 353.48360 * 8 7 5 35 35 H 1.08994 * 109.49924 * 185.41409 * 9 8 7 36 36 H 1.08998 * 109.50214 * 65.30806 * 9 8 7 37 37 H 1.08998 * 109.46572 * 301.34820 * 10 9 8 38 38 H 1.09001 * 109.44677 * 181.37827 * 10 9 8 39 39 H 0.97001 * 120.00041 * 180.02562 * 17 16 14 40 40 H 1.09001 * 109.47259 * 204.62216 * 22 13 11 41 41 H 1.08996 * 109.47458 * 324.62130 * 22 13 11 42 42 H 1.09004 * 109.47386 * 184.99690 * 23 22 13 43 43 H 1.08999 * 109.46956 * 304.99494 * 23 22 13 44 44 H 0.96699 * 114.00244 * 180.02562 * 24 23 22 45 45 H 1.09004 * 109.62731 * 6.60156 * 25 7 5 46 46 H 1.09000 * 109.58345 * 246.15680 * 25 7 5 47 47 H 1.09002 * 112.84703 * 287.07144 * 26 3 2 48 48 H 1.08997 * 113.61954 * 334.57028 * 27 26 3 49 49 H 1.08999 * 113.61532 * 105.47097 * 27 26 3 50 50 H 1.09002 * 113.61524 * 270.88345 * 28 27 26 51 51 H 1.08996 * 113.61491 * 139.98043 * 28 27 26 52 52 H 1.09004 * 113.61466 * 220.02353 * 29 28 27 53 53 H 1.08997 * 113.61417 * 89.11159 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3451 1.9993 0.5139 5 6 3.3386 1.2638 0.7104 6 8 4.0230 0.2638 0.6586 7 7 3.7663 2.3378 1.4032 8 6 2.9858 3.5826 1.4115 9 6 3.8965 4.7385 0.9858 10 6 5.1335 4.7663 1.8866 11 6 5.9100 3.4567 1.7301 12 1 6.1984 3.3272 0.6870 13 7 7.1110 3.4973 2.5682 14 6 6.9951 3.6542 3.9236 15 1 6.2409 4.3127 4.3285 16 6 7.8469 2.9667 4.7771 17 7 8.4761 1.8912 4.3532 18 14 8.1002 3.5681 6.5275 19 1 6.7993 3.5695 7.2435 20 1 9.0494 2.6662 7.2282 21 1 8.6530 4.9461 6.5023 22 6 8.4359 3.3700 1.9561 23 6 8.9030 4.7405 1.4615 24 8 9.0847 5.6134 2.5782 25 6 5.0227 2.2860 2.1644 26 6 2.2177 1.7714 -1.4425 27 6 2.2655 3.3008 -1.5949 28 6 1.4429 3.1196 -2.8816 29 6 0.9221 1.8081 -2.2703 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 2.6048 3.7683 2.4158 34 1 2.1522 3.4983 0.7142 35 1 3.3567 5.6807 1.0801 36 1 4.2040 4.5969 -0.0502 37 1 4.8241 4.8831 2.9251 38 1 5.7714 5.6029 1.6014 39 1 9.0711 1.4106 4.9499 40 1 9.1422 2.9901 2.6943 41 1 8.3827 2.6790 1.1149 42 1 9.8472 4.6318 0.9280 43 1 8.1529 5.1597 0.7909 44 1 9.3806 6.5023 2.3386 45 1 5.5346 1.3450 1.9625 46 1 4.8078 2.3659 3.2300 47 1 3.0392 1.2557 -1.9399 48 1 1.7331 3.8350 -0.8080 49 1 3.2682 3.6911 -1.7691 50 1 2.0531 2.9738 -3.7730 51 1 0.6697 3.8760 -3.0157 52 1 0.8405 0.9932 -2.9897 53 1 0.0226 1.9341 -1.6679 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479657290.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:10 Heat of formation + Delta-G solvation = -71.149633 kcal Electronic energy + Delta-G solvation = -32596.550996 eV Core-core repulsion = 28470.503457 eV Total energy + Delta-G solvation = -4126.047538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.65375 -38.79226 -37.50934 -36.82824 -36.09334 -34.58040 -32.24047 -31.22571 -30.29329 -29.19569 -27.23814 -26.64784 -25.78616 -25.14842 -24.14952 -23.05037 -22.31475 -20.71005 -19.93257 -19.72609 -18.66521 -17.42542 -16.68963 -16.53338 -16.32466 -16.11326 -15.71589 -15.16918 -14.79917 -14.61982 -14.34017 -14.05110 -13.97617 -13.77649 -13.50604 -13.39615 -12.99255 -12.83590 -12.65009 -12.50503 -12.33389 -12.23777 -12.07803 -11.89008 -11.64549 -11.27117 -11.18664 -11.08296 -10.85238 -10.74936 -10.65703 -10.59226 -10.43662 -10.40264 -10.07449 -9.99927 -9.83542 -9.71547 -9.55185 -9.13361 -9.04551 -8.35730 -8.15763 -6.48597 -5.68955 -3.24638 2.81866 3.07440 3.45924 3.51747 3.56557 3.87435 4.30648 4.44084 4.44930 4.55972 4.59496 4.72292 4.91703 4.99561 5.09837 5.15355 5.21263 5.23925 5.26203 5.31570 5.43264 5.46351 5.47761 5.55065 5.57560 5.64446 5.66753 5.72722 5.77328 5.86622 5.94652 5.96152 6.06804 6.13696 6.21176 6.23322 6.33856 6.34679 6.56563 6.64941 6.71409 6.81088 6.86957 6.99887 7.10977 7.17745 7.69189 7.81557 7.92161 8.47427 8.54979 8.66092 9.26966 9.90741 10.46854 11.33890 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015641 B = 0.003405 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.683255 B = 8220.730490 C = 9026.202042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.357 6.357 3 C 0.083 3.917 4 H 0.079 0.921 5 C 0.513 3.487 6 O -0.524 6.524 7 N -0.603 5.603 8 C 0.098 3.902 9 C -0.131 4.131 10 C -0.125 4.125 11 C 0.167 3.833 12 H 0.047 0.953 13 N -0.567 5.567 14 C -0.243 4.243 15 H 0.056 0.944 16 C 0.019 3.981 17 N -0.890 5.890 18 Si 0.897 3.103 19 H -0.285 1.285 20 H -0.293 1.293 21 H -0.282 1.282 22 C 0.147 3.853 23 C 0.060 3.940 24 O -0.543 6.543 25 C 0.109 3.891 26 C -0.124 4.124 27 C -0.140 4.140 28 C -0.140 4.140 29 C -0.135 4.135 30 H 0.087 0.913 31 H 0.040 0.960 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.254 0.746 40 H 0.102 0.898 41 H 0.037 0.963 42 H 0.019 0.981 43 H 0.022 0.978 44 H 0.349 0.651 45 H 0.087 0.913 46 H 0.076 0.924 47 H 0.102 0.898 48 H 0.088 0.912 49 H 0.075 0.925 50 H 0.081 0.919 51 H 0.069 0.931 52 H 0.071 0.929 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.490 5.718 -13.235 21.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.275 6.275 3 C 0.022 3.978 4 H 0.096 0.904 5 C 0.299 3.701 6 O -0.399 6.399 7 N -0.338 5.338 8 C -0.025 4.025 9 C -0.170 4.170 10 C -0.165 4.165 11 C 0.059 3.941 12 H 0.065 0.935 13 N -0.286 5.286 14 C -0.373 4.373 15 H 0.074 0.926 16 C -0.181 4.181 17 N -0.533 5.533 18 Si 0.727 3.273 19 H -0.211 1.211 20 H -0.219 1.219 21 H -0.208 1.208 22 C 0.020 3.980 23 C -0.020 4.020 24 O -0.344 6.344 25 C -0.014 4.014 26 C -0.143 4.143 27 C -0.177 4.177 28 C -0.177 4.177 29 C -0.173 4.173 30 H 0.106 0.894 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.098 0.902 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.040 0.960 44 H 0.191 0.809 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.120 0.880 48 H 0.106 0.894 49 H 0.094 0.906 50 H 0.100 0.900 51 H 0.087 0.913 52 H 0.090 0.910 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.058 4.296 -12.818 20.236 hybrid contribution 0.190 1.098 0.622 1.276 sum -14.868 5.394 -12.196 19.972 Atomic orbital electron populations 1.23089 0.81213 1.03159 1.00266 1.88042 1.19229 1.25328 1.94883 1.22080 0.93942 0.86253 0.95566 0.90372 1.20208 0.87323 0.83410 0.79179 1.90709 1.56794 1.31751 1.60657 1.48294 1.24615 1.11716 1.49145 1.21971 0.94207 0.84654 1.01694 1.21953 0.97571 0.97043 1.00449 1.21968 0.95202 0.99795 0.99519 1.20635 0.88078 0.91552 0.93848 0.93454 1.43641 0.98128 1.83662 1.03170 1.18706 1.18079 1.19474 0.81016 0.92593 1.25094 1.00838 0.94598 0.97594 1.69983 1.31579 1.15737 1.35990 0.86483 0.77543 0.78479 0.84820 1.21117 1.21932 1.20814 1.20986 0.89590 0.90049 0.97372 1.23085 0.96089 0.94861 0.88009 1.86856 1.90320 1.24025 1.33248 1.22367 0.81912 1.01705 0.95416 1.22995 0.99976 0.96941 0.94429 1.23172 1.01405 0.95022 0.98108 1.22810 0.99751 0.97621 0.97538 1.23017 0.96813 0.98298 0.99140 0.89403 0.94103 0.93060 0.91526 0.90239 0.91483 0.91908 0.91574 0.92388 0.93646 0.88066 0.94500 0.96244 0.96022 0.80860 0.89429 0.90562 0.87985 0.89387 0.90600 0.90040 0.91265 0.91026 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.56 101.05 1.07 1.25 16 2 O -0.36 -5.15 10.01 -52.68 -0.53 -5.68 16 3 C 0.08 1.10 1.96 -27.88 -0.05 1.04 16 4 H 0.08 0.84 5.77 -51.93 -0.30 0.54 16 5 C 0.51 9.13 6.87 -10.99 -0.08 9.06 16 6 O -0.52 -11.90 16.19 -11.90 -0.19 -12.09 16 7 N -0.60 -10.11 2.97 -172.71 -0.51 -10.62 16 8 C 0.10 1.22 5.65 -3.71 -0.02 1.20 16 9 C -0.13 -1.64 5.98 -26.61 -0.16 -1.80 16 10 C -0.13 -2.12 5.11 -26.68 -0.14 -2.26 16 11 C 0.17 3.38 2.78 -67.81 -0.19 3.19 16 12 H 0.05 0.95 7.87 -51.93 -0.41 0.55 16 13 N -0.57 -13.55 2.32 -165.52 -0.38 -13.93 16 14 C -0.24 -6.44 7.89 -15.06 -0.12 -6.56 16 15 H 0.06 1.49 6.89 -52.49 -0.36 1.13 16 16 C 0.02 0.52 4.92 -17.43 -0.09 0.43 16 17 N -0.89 -25.87 11.52 55.49 0.64 -25.23 16 18 Si 0.90 22.21 29.60 -169.99 -5.03 17.18 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 21 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 22 C 0.15 3.43 5.56 -4.04 -0.02 3.41 16 23 C 0.06 1.17 7.39 37.16 0.27 1.45 16 24 O -0.54 -11.27 13.39 -35.23 -0.47 -11.74 16 25 C 0.11 2.26 5.77 -3.67 -0.02 2.24 16 26 C -0.12 -1.37 3.35 -89.81 -0.30 -1.67 16 27 C -0.14 -1.23 6.28 -25.92 -0.16 -1.40 16 28 C -0.14 -1.04 8.08 -25.92 -0.21 -1.25 16 29 C -0.14 -1.11 6.22 -25.92 -0.16 -1.27 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.04 0.34 8.09 -51.93 -0.42 -0.08 16 32 H 0.05 0.38 4.85 -51.93 -0.25 0.13 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 34 H 0.08 0.78 2.65 -51.92 -0.14 0.64 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.76 7.05 -51.93 -0.37 0.40 16 37 H 0.07 1.22 7.05 -51.93 -0.37 0.86 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.10 2.75 5.59 -51.93 -0.29 2.46 16 41 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.35 5.24 9.12 45.56 0.42 5.66 16 45 H 0.09 2.15 7.00 -51.93 -0.36 1.78 16 46 H 0.08 1.73 7.50 -51.93 -0.39 1.34 16 47 H 0.10 1.33 8.14 -51.93 -0.42 0.91 16 48 H 0.09 0.68 5.83 -51.93 -0.30 0.37 16 49 H 0.08 0.73 7.30 -51.93 -0.38 0.35 16 50 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 51 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 53 H 0.08 0.58 6.16 -51.93 -0.32 0.26 16 LS Contribution 398.19 15.07 6.00 6.00 Total: -1.00 -33.91 398.19 -8.88 -42.79 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -8.02 Total: 6.27 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -0.38 Total: 7.07 kcal Atomic # 7 Polarization: -49.53 SS G_CDS: -0.26 Total: -49.79 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -1.19 Total: -29.51 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.03 Total: 17.18 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.91 -8.88 -42.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479657290.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.359 kcal (2) G-P(sol) polarization free energy of solvation -33.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds