Wall clock time and date at job start Sat Apr 11 2020 06:10:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99568 * 2 1 4 4 C 1.53006 * 109.46814 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47259 * 65.00219 * 4 3 2 6 6 C 1.36939 * 119.99814 * 270.00003 * 5 4 3 7 7 H 1.07998 * 120.00540 * 145.84531 * 6 5 4 8 8 C 1.38823 * 119.99688 * 325.84679 * 6 5 4 9 9 N 1.31614 * 120.00080 * 337.32250 * 8 6 5 10 10 Si 1.86800 * 119.99830 * 157.32925 * 8 6 5 11 11 H 1.48504 * 109.47276 * 59.99750 * 10 8 6 12 12 H 1.48505 * 109.46799 * 179.97438 * 10 8 6 13 13 H 1.48496 * 109.46953 * 299.99765 * 10 8 6 14 14 C 1.46490 * 120.00268 * 89.99553 * 5 4 3 15 15 C 1.53043 * 109.46030 * 118.76196 * 14 5 4 16 16 C 1.53193 * 109.31458 * 181.38793 * 15 14 5 17 17 N 1.46934 * 108.77259 * 305.36518 * 16 15 14 18 18 C 1.34774 * 120.62605 * 233.58404 * 17 16 15 19 19 O 1.21280 * 120.00141 * 5.00876 * 18 17 16 20 20 C 1.50701 * 119.99554 * 184.72638 * 18 17 16 21 21 C 1.52999 * 115.55496 * 276.85514 * 20 18 17 22 22 O 1.42900 * 109.47140 * 305.05410 * 21 20 18 23 23 C 1.42903 * 113.99938 * 180.02562 * 22 21 20 24 24 C 1.53009 * 117.49369 * 131.14966 * 20 18 17 25 25 C 1.53002 * 117.49640 * 62.53148 * 20 18 17 26 26 C 1.46919 * 118.73952 * 53.86067 * 17 16 15 27 27 C 1.53042 * 109.46304 * 238.83288 * 14 5 4 28 28 H 1.08996 * 109.47361 * 300.00072 * 1 2 3 29 29 H 1.09004 * 109.46889 * 60.00820 * 1 2 3 30 30 H 1.09004 * 109.46602 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47383 * 60.00143 * 3 2 1 32 32 H 1.08998 * 109.46838 * 299.99555 * 3 2 1 33 33 H 1.09000 * 109.46979 * 304.99579 * 4 3 2 34 34 H 1.09003 * 109.46872 * 185.00033 * 4 3 2 35 35 H 0.96999 * 120.00338 * 179.97438 * 9 8 6 36 36 H 1.09002 * 109.44793 * 358.79917 * 14 5 4 37 37 H 1.08994 * 109.49738 * 61.43379 * 15 14 5 38 38 H 1.08995 * 109.49918 * 301.33726 * 15 14 5 39 39 H 1.08996 * 109.58947 * 185.58061 * 16 15 14 40 40 H 1.08995 * 109.58612 * 65.14759 * 16 15 14 41 41 H 1.09006 * 109.46398 * 65.04975 * 21 20 18 42 42 H 1.08998 * 109.47110 * 185.04815 * 21 20 18 43 43 H 1.08992 * 109.47148 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.46770 * 299.99382 * 23 22 21 45 45 H 1.08992 * 109.47226 * 59.99336 * 23 22 21 46 46 H 1.08989 * 117.50052 * 0.02562 * 24 20 18 47 47 H 1.09002 * 117.49476 * 145.02126 * 24 20 18 48 48 H 1.08997 * 117.49675 * 214.97650 * 25 20 18 49 49 H 1.08997 * 117.49874 * 359.97438 * 25 20 18 50 50 H 1.09006 * 109.58833 * 65.92684 * 26 17 16 51 51 H 1.08997 * 109.58853 * 186.35036 * 26 17 16 52 52 H 1.09007 * 109.49027 * 298.56361 * 27 14 5 53 53 H 1.09000 * 109.50055 * 58.65897 * 27 14 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 7 3.9767 0.5641 -1.2509 6 6 4.0979 -0.7973 -1.3345 7 1 3.8761 -1.3033 -2.2624 8 6 4.5059 -1.5271 -0.2263 9 7 5.1892 -0.9400 0.7332 10 14 4.0851 -3.3425 -0.0969 11 1 4.6802 -4.0717 -1.2456 12 1 4.6314 -3.8880 1.1717 13 1 2.6098 -3.5111 -0.1142 14 6 4.2882 1.3999 -2.4129 15 6 5.7557 1.2060 -2.8017 16 6 6.0870 2.1073 -3.9953 17 7 5.1339 1.8275 -5.0780 18 6 5.5711 1.5138 -6.3137 19 8 6.7579 1.3712 -6.5190 20 6 4.5848 1.3340 -7.4388 21 6 3.9270 -0.0446 -7.5259 22 8 4.9386 -1.0517 -7.5919 23 6 4.4280 -2.3837 -7.6768 24 6 4.8705 2.0652 -8.7522 25 6 3.7410 2.5460 -7.8389 26 6 3.6952 1.9021 -4.7895 27 6 3.3907 0.9978 -3.5855 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8899 32 1 1.6885 1.8464 -0.8900 33 1 3.8507 0.5687 0.8427 34 1 3.9784 2.1767 0.0902 35 1 5.4740 -1.4498 1.5077 36 1 4.1137 2.4467 -2.1644 37 1 5.9253 0.1644 -3.0742 38 1 6.3935 1.4704 -1.9583 39 1 7.1007 1.9012 -4.3387 40 1 6.0052 3.1526 -3.6977 41 1 3.3084 -0.2083 -6.6434 42 1 3.3054 -0.0948 -8.4198 43 1 5.2579 -3.0887 -7.7236 44 1 3.8196 -2.5962 -6.7978 45 1 3.8171 -2.4821 -8.5740 46 1 5.7719 2.6758 -8.8025 47 1 4.5898 1.5639 -9.6785 48 1 2.7173 2.3611 -8.1644 49 1 3.8989 3.4731 -7.2880 50 1 3.4224 2.9312 -4.5553 51 1 3.1304 1.5606 -5.6569 52 1 3.5827 -0.0419 -3.8507 53 1 2.3452 1.1139 -3.3000 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483822286.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:10:54 Heat of formation + Delta-G solvation = -88.086357 kcal Electronic energy + Delta-G solvation = -32440.906042 eV Core-core repulsion = 28314.124072 eV Total energy + Delta-G solvation = -4126.781970 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.55496 -39.47442 -38.79501 -38.23247 -37.23380 -36.49680 -33.71029 -32.29002 -31.91354 -29.78051 -29.25320 -27.14291 -26.83910 -26.46802 -25.14488 -24.39437 -23.40955 -23.13891 -22.11198 -21.21521 -19.71515 -18.39937 -17.90101 -17.43641 -17.17344 -17.03505 -16.85669 -16.64806 -16.50700 -16.26142 -15.67674 -15.57830 -15.49411 -15.30272 -15.16963 -14.77869 -14.54020 -14.27341 -13.70451 -13.49769 -13.38266 -13.30790 -13.20084 -13.11368 -12.89713 -12.70498 -12.52999 -12.48102 -12.34506 -12.31274 -12.21369 -12.06098 -11.79246 -11.63394 -11.52072 -11.45327 -11.26308 -11.08355 -10.71840 -10.53014 -10.36188 -10.25971 -9.59333 -8.45351 -7.69524 -5.23114 1.44434 1.47885 1.53742 1.60721 2.01918 2.43947 2.59410 3.02855 3.26684 3.40434 3.49213 3.63800 3.69861 3.91524 3.97633 4.05874 4.17874 4.26549 4.30341 4.37259 4.44733 4.45266 4.47714 4.48739 4.56973 4.60069 4.65879 4.67964 4.73105 4.74388 4.78436 4.80393 4.84488 4.86083 4.87154 4.92783 4.96921 4.98803 5.04456 5.13072 5.20602 5.24352 5.48658 5.61841 5.69398 5.78300 5.93014 6.19437 6.49530 6.52946 6.73784 7.22065 7.31478 8.03141 8.48742 9.26753 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011675 B = 0.003761 C = 0.003534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2397.686874 B = 7442.899678 C = 7920.272464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.397 6.397 3 C 0.058 3.942 4 C 0.134 3.866 5 N -0.583 5.583 6 C -0.214 4.214 7 H 0.041 0.959 8 C -0.031 4.031 9 N -0.919 5.919 10 Si 0.935 3.065 11 H -0.288 1.288 12 H -0.298 1.298 13 H -0.283 1.283 14 C 0.174 3.826 15 C -0.121 4.121 16 C 0.121 3.879 17 N -0.602 5.602 18 C 0.549 3.451 19 O -0.588 6.588 20 C -0.181 4.181 21 C 0.103 3.897 22 O -0.418 6.418 23 C 0.028 3.972 24 C -0.142 4.142 25 C -0.121 4.121 26 C 0.116 3.884 27 C -0.127 4.127 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.244 0.756 36 H 0.072 0.928 37 H 0.025 0.975 38 H 0.050 0.950 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.092 0.908 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.067 0.933 46 H 0.086 0.914 47 H 0.122 0.878 48 H 0.140 0.860 49 H 0.111 0.889 50 H 0.097 0.903 51 H 0.103 0.897 52 H 0.033 0.967 53 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.279 9.654 -15.541 21.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.021 4.021 4 C 0.008 3.992 5 N -0.302 5.302 6 C -0.345 4.345 7 H 0.059 0.941 8 C -0.226 4.226 9 N -0.565 5.565 10 Si 0.766 3.234 11 H -0.215 1.215 12 H -0.225 1.225 13 H -0.209 1.209 14 C 0.067 3.933 15 C -0.161 4.161 16 C -0.002 4.002 17 N -0.334 5.334 18 C 0.338 3.662 19 O -0.469 6.469 20 C -0.184 4.184 21 C 0.026 3.974 22 O -0.338 6.338 23 C -0.068 4.068 24 C -0.179 4.179 25 C -0.158 4.158 26 C -0.006 4.006 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.094 0.906 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.071 0.929 35 H 0.053 0.947 36 H 0.090 0.910 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.109 0.891 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.057 0.943 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.140 0.860 48 H 0.158 0.842 49 H 0.129 0.871 50 H 0.115 0.885 51 H 0.121 0.879 52 H 0.052 0.948 53 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -10.289 9.390 -15.465 20.813 hybrid contribution 0.010 -1.584 0.871 1.808 sum -10.279 7.806 -14.594 19.482 Atomic orbital electron populations 1.22792 0.81798 1.02286 1.00109 1.88166 1.19391 1.28901 1.95176 1.23229 0.96578 0.83848 0.98420 1.21066 0.89902 0.96347 0.91900 1.43939 1.75374 1.02080 1.08812 1.18675 1.35796 0.83310 0.96692 0.94097 1.25342 0.98307 0.99671 0.99316 1.70036 1.38752 1.36417 1.11322 0.85847 0.78071 0.83446 0.76062 1.21473 1.22465 1.20937 1.20530 0.91156 0.94034 0.87560 1.22120 0.99679 0.98122 0.96160 1.21550 0.92919 0.99470 0.86268 1.48186 1.08437 1.68022 1.08753 1.20022 0.88217 0.74504 0.83425 1.90624 1.19757 1.52536 1.83939 1.21285 1.04041 0.95760 0.97354 1.22093 0.89196 0.84058 1.02017 1.87974 1.34283 1.16285 1.95267 1.22871 1.00477 0.82580 1.00883 1.23098 1.00516 1.01391 0.92944 1.23349 0.97830 0.94263 1.00343 1.22074 0.78938 1.01144 0.98444 1.22246 1.00332 0.98710 0.95386 0.93714 0.93480 0.90554 0.93877 0.93716 0.91210 0.92939 0.94682 0.90991 0.95610 0.93091 0.91912 0.89115 0.92565 0.88999 0.89709 0.94262 0.91406 0.89575 0.85953 0.84189 0.87112 0.88511 0.87930 0.94787 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 11.01 113.37 1.25 2.05 16 2 O -0.40 -16.58 10.18 -148.98 -1.52 -18.10 16 3 C 0.06 2.13 6.28 71.98 0.45 2.58 16 4 C 0.13 5.92 5.69 86.38 0.49 6.41 16 5 N -0.58 -26.91 2.37 -677.87 -1.61 -28.51 16 6 C -0.21 -11.48 7.81 84.04 0.66 -10.83 16 7 H 0.04 2.30 6.82 -2.91 -0.02 2.28 16 8 C -0.03 -1.72 4.96 84.87 0.42 -1.30 16 9 N -0.92 -54.16 11.31 21.65 0.24 -53.92 16 10 Si 0.93 47.13 29.61 68.60 2.03 49.16 16 11 H -0.29 -14.38 7.11 99.48 0.71 -13.67 16 12 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 13 H -0.28 -14.10 7.11 99.48 0.71 -13.39 16 14 C 0.17 6.48 2.59 45.02 0.12 6.59 16 15 C -0.12 -4.84 5.32 30.67 0.16 -4.67 16 16 C 0.12 4.00 6.44 86.36 0.56 4.56 16 17 N -0.60 -18.13 2.97 -818.07 -2.43 -20.56 16 18 C 0.55 18.07 6.58 87.66 0.58 18.65 16 19 O -0.59 -25.09 16.45 -3.03 -0.05 -25.14 16 20 C -0.18 -4.18 1.05 -52.92 -0.06 -4.23 16 21 C 0.10 2.29 5.65 71.98 0.41 2.69 16 22 O -0.42 -12.62 10.44 -148.98 -1.55 -14.17 16 23 C 0.03 0.63 11.01 113.37 1.25 1.88 16 24 C -0.14 -2.59 9.88 30.60 0.30 -2.28 16 25 C -0.12 -1.59 8.54 30.60 0.26 -1.33 16 26 C 0.12 2.71 5.95 86.51 0.51 3.22 16 27 C -0.13 -4.03 5.30 30.82 0.16 -3.87 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.08 2.19 8.14 -2.38 -0.02 2.17 16 31 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.07 3.73 5.31 -2.39 -0.01 3.72 16 34 H 0.05 2.09 7.93 -2.39 -0.02 2.08 16 35 H 0.24 14.23 8.31 -92.71 -0.77 13.46 16 36 H 0.07 2.34 7.80 -2.39 -0.02 2.32 16 37 H 0.02 1.23 7.73 -2.39 -0.02 1.21 16 38 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.06 2.35 7.00 -2.39 -0.02 2.33 16 40 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 41 H 0.06 1.25 7.13 -2.38 -0.02 1.24 16 42 H 0.09 1.37 8.09 -2.39 -0.02 1.35 16 43 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 46 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.12 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.10 1.92 4.52 -2.39 -0.01 1.91 16 52 H 0.03 1.31 6.99 -2.38 -0.02 1.30 16 53 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 Total: -1.00 -77.41 416.61 3.51 -73.89 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.87 Total: 17.21 kcal Atomic # 6 Polarization: 12.61 SS G_CDS: 7.52 Total: 20.13 kcal Atomic # 7 Polarization: -99.20 SS G_CDS: -3.79 Total: -102.99 kcal Atomic # 8 Polarization: -54.28 SS G_CDS: -3.12 Total: -57.40 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -77.41 3.51 -73.89 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483822286.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.193 kcal (2) G-P(sol) polarization free energy of solvation -77.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds