Wall clock time and date at job start Sat Apr 11 2020 06:11:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 113.99704 * 2 1 4 4 H 1.08993 * 109.46960 * 29.99805 * 3 2 1 5 5 C 1.53000 * 109.46875 * 270.00142 * 3 2 1 6 6 C 1.53005 * 109.46962 * 180.02562 * 5 3 2 7 7 C 1.52998 * 109.47030 * 59.99760 * 6 5 3 8 8 C 1.53002 * 109.46879 * 299.99618 * 7 6 5 9 9 H 1.08992 * 109.47675 * 300.00241 * 8 7 6 10 10 C 1.50703 * 109.46881 * 180.02562 * 8 7 6 11 11 O 1.21286 * 120.00417 * 264.72401 * 10 8 7 12 12 N 1.34778 * 119.99805 * 84.44728 * 10 8 7 13 13 C 1.46928 * 120.63020 * 354.78437 * 12 10 8 14 14 C 1.53626 * 108.54081 * 126.37119 * 13 12 10 15 15 C 1.53042 * 109.24120 * 54.85814 * 14 13 12 16 16 O 1.42902 * 109.46008 * 58.53083 * 15 14 13 17 17 C 1.53002 * 109.44935 * 178.49846 * 15 14 13 18 18 N 1.46502 * 109.46752 * 305.05962 * 17 15 14 19 19 C 1.36942 * 119.99710 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00140 * 0.02562 * 19 18 17 21 21 C 1.38817 * 119.99570 * 179.97438 * 19 18 17 22 22 N 1.31616 * 120.00053 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99479 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46976 * 90.00718 * 23 21 19 25 25 H 1.48501 * 109.47261 * 210.00169 * 23 21 19 26 26 H 1.48497 * 109.47629 * 330.00687 * 23 21 19 27 27 C 1.53041 * 109.53909 * 298.51019 * 15 14 13 28 28 C 1.46928 * 120.63272 * 175.07100 * 12 10 8 29 29 C 1.52993 * 109.47084 * 150.00103 * 3 2 1 30 30 H 1.08994 * 109.47457 * 299.99842 * 1 2 3 31 31 H 1.09004 * 109.47356 * 60.00503 * 1 2 3 32 32 H 1.09004 * 109.47025 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.46971 * 299.99660 * 5 3 2 34 34 H 1.08998 * 109.47432 * 59.99742 * 5 3 2 35 35 H 1.09002 * 109.47037 * 179.97438 * 6 5 3 36 36 H 1.08993 * 109.46593 * 299.99492 * 6 5 3 37 37 H 1.09008 * 109.46644 * 180.02562 * 7 6 5 38 38 H 1.08993 * 109.47651 * 60.00380 * 7 6 5 39 39 H 1.08996 * 109.58645 * 246.20415 * 13 12 10 40 40 H 1.09000 * 109.58336 * 6.62857 * 13 12 10 41 41 H 1.08997 * 109.63373 * 294.86733 * 14 13 12 42 42 H 1.08997 * 109.43141 * 174.72553 * 14 13 12 43 43 H 0.96700 * 113.99645 * 59.93265 * 16 15 14 44 44 H 1.08996 * 109.47330 * 65.05703 * 17 15 14 45 45 H 1.09000 * 109.47426 * 185.06285 * 17 15 14 46 46 H 0.97004 * 120.00200 * 0.02562 * 18 17 15 47 47 H 0.97002 * 119.99462 * 179.97438 * 22 21 19 48 48 H 1.09002 * 109.49444 * 301.41576 * 27 15 14 49 49 H 1.08997 * 109.52541 * 181.33432 * 27 15 14 50 50 H 1.09008 * 109.58337 * 353.36914 * 28 12 10 51 51 H 1.09002 * 109.59137 * 113.64762 * 28 12 10 52 52 H 1.08999 * 109.47604 * 59.99600 * 29 3 2 53 53 H 1.09007 * 109.47138 * 300.00124 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 1 1.3449 1.9994 0.5138 5 6 2.2175 1.7714 -1.4425 6 6 2.8404 3.1690 -1.4425 7 6 4.1891 3.1262 -0.7215 8 6 3.9816 2.6604 0.7211 9 1 3.3167 3.3545 1.2350 10 6 5.3100 2.6189 1.4315 11 8 5.9310 1.5791 1.4961 12 7 5.8106 3.7386 1.9903 13 6 5.1306 5.0296 1.8182 14 6 4.8848 5.6411 3.2059 15 6 6.2128 5.7264 3.9619 16 8 7.1361 6.5204 3.2140 17 6 5.9795 6.3693 5.3305 18 7 5.3213 7.6663 5.1549 19 6 5.0098 8.4296 6.2483 20 1 5.2497 8.0757 7.2401 21 6 4.3865 9.6588 6.0819 22 7 4.0946 10.0903 4.8732 23 14 3.9623 10.7003 7.5734 24 1 5.1009 11.6000 7.8889 25 1 2.7547 11.5140 7.2817 26 1 3.6941 9.8153 8.7352 27 6 6.7858 4.3199 4.1503 28 6 7.0500 3.6925 2.7780 29 6 3.3588 1.2634 0.7212 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 2.8829 1.0775 -1.9563 34 1 1.2567 1.8014 -1.9564 35 1 2.9885 3.5007 -2.4702 36 1 2.1754 3.8630 -0.9287 37 1 4.6326 4.1220 -0.7211 38 1 4.8541 2.4322 -1.2354 39 1 5.7579 5.6971 1.2276 40 1 4.1780 4.8760 1.3111 41 1 4.1882 5.0153 3.7638 42 1 4.4658 6.6409 3.0926 43 1 6.8377 7.4266 3.0562 44 1 5.3462 5.7193 5.9341 45 1 6.9364 6.5126 5.8325 46 1 5.1054 7.9841 4.2641 47 1 3.6588 10.9491 4.7570 48 1 6.0712 3.7066 4.6993 49 1 7.7196 4.3789 4.7093 50 1 7.3643 2.6564 2.9043 51 1 7.8315 4.2511 2.2628 52 1 4.0241 0.5695 0.2075 53 1 3.2110 0.9314 1.7489 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484959328.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:32 Heat of formation + Delta-G solvation = -157.147517 kcal Electronic energy + Delta-G solvation = -31465.441261 eV Core-core repulsion = 27335.664575 eV Total energy + Delta-G solvation = -4129.776686 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.78030 -40.30132 -39.37743 -37.20459 -36.80064 -35.78152 -33.53112 -32.87580 -31.80270 -31.70910 -30.93318 -28.26836 -27.32691 -25.90887 -24.58100 -24.48595 -23.34909 -22.96249 -21.57010 -20.85462 -19.94956 -19.43792 -18.43679 -17.57982 -17.24394 -16.77734 -16.71044 -16.55735 -16.07792 -16.03289 -15.89217 -15.72536 -15.33338 -15.00705 -14.96370 -14.79345 -14.48156 -14.30420 -14.22185 -14.08746 -13.56412 -13.45672 -13.18635 -13.09780 -12.97079 -12.81544 -12.73401 -12.62976 -12.33140 -12.30047 -12.22282 -12.08212 -12.02042 -11.95482 -11.67337 -11.50267 -11.47618 -11.30117 -10.97152 -10.87870 -10.66689 -10.34904 -9.64886 -9.01466 -7.96559 -5.24309 1.48525 1.49333 1.55328 1.57157 1.93823 2.55146 2.79565 3.26119 3.36795 3.41717 3.65611 3.67318 3.73102 3.85525 3.89858 3.98170 4.07345 4.12464 4.19794 4.25021 4.26322 4.33600 4.37610 4.41703 4.49876 4.54339 4.55971 4.59676 4.62037 4.72392 4.76439 4.83098 4.86110 4.89623 4.95193 4.98246 5.04298 5.08269 5.10279 5.14081 5.18892 5.21201 5.26899 5.33290 5.42517 5.49866 5.53381 6.25915 6.29580 6.39919 6.76338 7.12111 7.34216 8.04465 8.30920 9.25956 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013402 B = 0.002581 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2088.765417 B =10844.561295 C =11874.249253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.091 3.909 4 H 0.075 0.925 5 C -0.138 4.138 6 C -0.109 4.109 7 C -0.109 4.109 8 C -0.097 4.097 9 H 0.113 0.887 10 C 0.517 3.483 11 O -0.584 6.584 12 N -0.604 5.604 13 C 0.115 3.885 14 C -0.151 4.151 15 C 0.138 3.862 16 O -0.562 6.562 17 C 0.128 3.872 18 N -0.735 5.735 19 C -0.248 4.248 20 H 0.069 0.931 21 C -0.065 4.065 22 N -0.961 5.961 23 Si 0.967 3.033 24 H -0.289 1.289 25 H -0.294 1.294 26 H -0.274 1.274 27 C -0.111 4.111 28 C 0.122 3.878 29 C -0.093 4.093 30 H 0.047 0.953 31 H 0.053 0.947 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.059 0.941 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.382 0.618 44 H 0.025 0.975 45 H 0.019 0.981 46 H 0.379 0.621 47 H 0.253 0.747 48 H 0.080 0.920 49 H 0.086 0.914 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.060 0.940 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 -15.623 -14.025 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.033 3.967 4 H 0.093 0.907 5 C -0.176 4.176 6 C -0.147 4.147 7 C -0.147 4.147 8 C -0.118 4.118 9 H 0.131 0.869 10 C 0.307 3.693 11 O -0.464 6.464 12 N -0.336 5.336 13 C -0.007 4.007 14 C -0.189 4.189 15 C 0.097 3.903 16 O -0.369 6.369 17 C 0.001 3.999 18 N -0.380 5.380 19 C -0.379 4.379 20 H 0.087 0.913 21 C -0.258 4.258 22 N -0.611 5.611 23 Si 0.797 3.203 24 H -0.216 1.216 25 H -0.220 1.220 26 H -0.199 1.199 27 C -0.149 4.149 28 C 0.000 4.000 29 C -0.132 4.132 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.128 0.872 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.231 0.769 44 H 0.043 0.957 45 H 0.037 0.963 46 H 0.213 0.787 47 H 0.062 0.938 48 H 0.099 0.901 49 H 0.105 0.895 50 H 0.100 0.900 51 H 0.092 0.908 52 H 0.079 0.921 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.115 -16.849 -13.790 22.158 hybrid contribution -0.633 1.563 0.939 1.929 sum -4.748 -15.286 -12.852 20.527 Atomic orbital electron populations 1.22961 0.79654 1.03657 1.00863 1.87885 1.21308 1.28644 1.95252 1.22157 0.93827 0.84415 0.96260 0.90705 1.22027 1.01936 0.97522 0.96101 1.21476 0.95162 0.96255 1.01758 1.21559 0.99179 1.02100 0.91820 1.21290 0.93154 0.99124 0.98264 0.86897 1.21050 0.87789 0.82389 0.78064 1.90657 1.62362 1.32028 1.61364 1.48208 1.25743 1.08388 1.51222 1.21961 0.98747 0.83315 0.96628 1.22512 0.97402 1.02250 0.96781 1.21207 0.88767 0.90919 0.89368 1.86382 1.47243 1.27664 1.75616 1.21444 0.95124 0.87115 0.96239 1.42414 1.71484 1.18125 1.05989 1.19523 1.31117 0.98928 0.88370 0.91328 1.25421 1.02222 0.99207 0.98992 1.69748 1.48591 1.21451 1.21329 0.85242 0.76980 0.78730 0.79382 1.21640 1.21997 1.19926 1.21810 1.02651 0.92944 0.97536 1.21415 0.86249 1.01487 0.90873 1.21288 0.95711 0.95510 1.00660 0.93398 0.92803 0.88852 0.92080 0.90442 0.89625 0.90101 0.89942 0.92187 0.89951 0.87203 0.90983 0.90541 0.76879 0.95691 0.96290 0.78706 0.93848 0.90125 0.89528 0.90019 0.90803 0.92099 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.55 16 2 O -0.41 -8.24 10.35 -148.98 -1.54 -9.78 16 3 C 0.09 1.55 2.61 30.59 0.08 1.63 16 4 H 0.07 1.07 7.79 -2.39 -0.02 1.05 16 5 C -0.14 -1.90 5.54 30.60 0.17 -1.73 16 6 C -0.11 -1.23 5.92 30.60 0.18 -1.05 16 7 C -0.11 -1.65 4.99 30.59 0.15 -1.49 16 8 C -0.10 -1.83 1.66 -11.55 -0.02 -1.85 16 9 H 0.11 1.74 6.53 -2.39 -0.02 1.73 16 10 C 0.52 13.29 6.80 87.66 0.60 13.89 16 11 O -0.58 -19.47 15.53 -3.05 -0.05 -19.52 16 12 N -0.60 -14.48 2.97 -818.03 -2.43 -16.91 16 13 C 0.12 2.42 5.59 86.51 0.48 2.91 16 14 C -0.15 -4.02 4.89 30.82 0.15 -3.87 16 15 C 0.14 4.09 0.71 -10.77 -0.01 4.08 16 16 O -0.56 -17.13 11.71 -148.98 -1.74 -18.87 16 17 C 0.13 4.82 5.43 86.38 0.47 5.29 16 18 N -0.74 -34.08 5.07 -343.44 -1.74 -35.82 16 19 C -0.25 -13.17 9.99 84.03 0.84 -12.33 16 20 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 21 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 22 N -0.96 -54.75 13.06 21.65 0.28 -54.47 16 23 Si 0.97 44.40 29.55 68.60 2.03 46.42 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 26 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 27 C -0.11 -2.88 5.11 30.67 0.16 -2.73 16 28 C 0.12 3.12 6.17 86.36 0.53 3.65 16 29 C -0.09 -1.98 4.38 30.58 0.13 -1.85 16 30 H 0.05 0.56 8.08 -2.39 -0.02 0.54 16 31 H 0.05 0.54 7.87 -2.38 -0.02 0.53 16 32 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 34 H 0.08 0.88 7.87 -2.39 -0.02 0.86 16 35 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.08 1.11 7.27 -2.38 -0.02 1.09 16 38 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.08 1.70 7.81 -2.39 -0.02 1.69 16 40 H 0.11 1.75 5.06 -2.39 -0.01 1.73 16 41 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 42 H 0.08 2.33 6.53 -2.39 -0.02 2.32 16 43 H 0.38 11.71 8.19 -74.06 -0.61 11.10 16 44 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 46 H 0.38 17.79 5.55 -92.71 -0.51 17.27 16 47 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 48 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 49 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 50 H 0.08 2.20 7.04 -2.38 -0.02 2.19 16 51 H 0.07 1.91 7.82 -2.39 -0.02 1.89 16 52 H 0.06 1.55 7.87 -2.39 -0.02 1.53 16 53 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 Total: -1.00 -66.81 402.64 0.21 -66.60 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.22 Total: 39.33 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: 5.61 Total: 3.01 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -3.88 Total: -107.19 kcal Atomic # 8 Polarization: -44.84 SS G_CDS: -3.33 Total: -48.17 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -66.81 0.21 -66.60 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484959328.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.543 kcal (2) G-P(sol) polarization free energy of solvation -66.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds