Wall clock time and date at job start Sat Apr 11 2020 06:11:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42896 * 114.00035 * 2 1 4 4 C 1.53006 * 109.47158 * 180.02562 * 3 2 1 5 5 O 1.42899 * 109.47106 * 64.99843 * 4 3 2 6 6 C 1.42897 * 113.99656 * 180.02562 * 5 4 3 7 7 C 1.50706 * 109.47004 * 180.02562 * 6 5 4 8 8 O 1.21286 * 119.99578 * 0.02562 * 7 6 5 9 9 N 1.34769 * 120.00084 * 180.02562 * 7 6 5 10 10 C 1.46927 * 120.63059 * 359.97438 * 9 7 6 11 11 C 1.53194 * 108.77461 * 126.41636 * 10 9 7 12 12 C 1.53045 * 109.31440 * 54.63326 * 11 10 9 13 13 C 1.53042 * 109.53648 * 298.63537 * 12 11 10 14 14 H 1.08994 * 109.52657 * 301.39654 * 13 12 11 15 15 C 1.52998 * 109.49436 * 181.31769 * 13 12 11 16 16 H 1.09000 * 110.91838 * 302.61026 * 15 13 12 17 17 C 1.55153 * 111.00708 * 66.51270 * 15 13 12 18 18 C 1.54337 * 103.02376 * 153.38048 * 17 15 13 19 19 N 1.47023 * 107.26268 * 338.14300 * 18 17 15 20 20 C 1.36934 * 125.64748 * 178.84941 * 19 18 17 21 21 H 1.08001 * 119.99975 * 185.72945 * 20 19 18 22 22 C 1.38805 * 120.00115 * 5.46021 * 20 19 18 23 23 N 1.31628 * 120.00029 * 353.47648 * 22 20 19 24 24 Si 1.86797 * 120.00348 * 173.48127 * 22 20 19 25 25 H 1.48504 * 109.47287 * 94.97875 * 24 22 20 26 26 H 1.48501 * 109.47209 * 214.98161 * 24 22 20 27 27 H 1.48504 * 109.47224 * 334.98137 * 24 22 20 28 28 C 1.47427 * 108.70434 * 358.58298 * 19 18 17 29 29 C 1.46934 * 120.63116 * 179.97438 * 9 7 6 30 30 H 1.09008 * 109.46534 * 299.99540 * 1 2 3 31 31 H 1.08991 * 109.47271 * 59.99689 * 1 2 3 32 32 H 1.08994 * 109.47231 * 180.02562 * 1 2 3 33 33 H 1.08995 * 109.47326 * 60.00457 * 3 2 1 34 34 H 1.08999 * 109.47482 * 300.00126 * 3 2 1 35 35 H 1.08997 * 109.46638 * 304.99779 * 4 3 2 36 36 H 1.09000 * 109.47028 * 185.00304 * 4 3 2 37 37 H 1.08993 * 109.47564 * 60.00565 * 6 5 4 38 38 H 1.09005 * 109.47446 * 299.99993 * 6 5 4 39 39 H 1.09006 * 109.58534 * 246.19621 * 10 9 7 40 40 H 1.08994 * 109.58630 * 6.62751 * 10 9 7 41 41 H 1.08996 * 109.49848 * 174.58778 * 11 10 9 42 42 H 1.08996 * 109.49519 * 294.68502 * 11 10 9 43 43 H 1.08999 * 109.45988 * 178.61694 * 12 11 10 44 44 H 1.08997 * 109.45871 * 58.65770 * 12 11 10 45 45 H 1.09000 * 110.71932 * 271.94069 * 17 15 13 46 46 H 1.08994 * 110.71921 * 35.03288 * 17 15 13 47 47 H 1.08992 * 109.99336 * 218.66783 * 18 17 15 48 48 H 1.09002 * 109.77643 * 97.49402 * 18 17 15 49 49 H 0.96998 * 120.00098 * 180.02562 * 23 22 20 50 50 H 1.09003 * 110.36568 * 143.19663 * 28 19 18 51 51 H 1.08999 * 110.37043 * 265.51851 * 28 19 18 52 52 H 1.09001 * 109.58730 * 113.79876 * 29 9 7 53 53 H 1.08999 * 109.69931 * 353.44610 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5356 1.1846 -0.0006 5 8 3.9649 0.5796 -1.2220 6 6 5.3812 0.4191 -1.3245 7 6 5.7195 -0.2242 -2.6447 8 8 4.8349 -0.5160 -3.4214 9 7 7.0050 -0.4752 -2.9622 10 6 8.0876 -0.1270 -2.0319 11 6 8.9454 -1.3720 -1.7854 12 6 9.4251 -1.9301 -3.1273 13 6 8.2166 -2.3360 -3.9741 14 1 7.6297 -3.0815 -3.4375 15 6 8.6980 -2.9241 -5.3019 16 1 9.3252 -2.2121 -5.8383 17 6 9.4456 -4.2651 -5.0779 18 6 9.2361 -5.0076 -6.4146 19 7 8.0526 -4.4199 -7.0593 20 6 7.5434 -4.7847 -8.2770 21 1 6.7232 -4.2295 -8.7076 22 6 8.0851 -5.8646 -8.9605 23 7 9.1672 -6.4577 -8.5024 24 14 7.2785 -6.4762 -10.5304 25 1 7.9432 -5.8538 -11.7035 26 1 7.4110 -7.9530 -10.6122 27 1 5.8398 -6.1079 -10.5237 28 6 7.5012 -3.3773 -6.1748 29 6 7.3505 -1.1024 -4.2452 30 1 -0.3633 0.5138 0.8901 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0276 0.0005 33 1 1.6887 1.8463 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8515 0.5682 0.8410 36 1 3.9786 2.1765 0.0890 37 1 5.7351 -0.2135 -0.5105 38 1 5.8629 1.3949 -1.2622 39 1 8.7033 0.6608 -2.4661 40 1 7.6626 0.2165 -1.0888 41 1 9.8071 -1.1049 -1.1736 42 1 8.3519 -2.1263 -1.2690 43 1 10.0559 -2.8018 -2.9535 44 1 9.9977 -1.1668 -3.6541 45 1 10.5054 -4.0896 -4.8935 46 1 8.9995 -4.8223 -4.2542 47 1 9.0688 -6.0686 -6.2293 48 1 10.1102 -4.8737 -7.0518 49 1 9.5459 -7.2121 -8.9802 50 1 7.1230 -2.5415 -6.7636 51 1 6.7101 -3.7902 -5.5490 52 1 7.9059 -0.3943 -4.8602 53 1 6.4403 -1.4021 -4.7646 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485081960.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:54 Heat of formation + Delta-G solvation = -128.407910 kcal Electronic energy + Delta-G solvation = -30387.432181 eV Core-core repulsion = 26258.901738 eV Total energy + Delta-G solvation = -4128.530443 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.38415 -39.84960 -39.18840 -38.19320 -37.72335 -35.23991 -33.66145 -32.51689 -31.65069 -30.90588 -29.19945 -28.35295 -27.14109 -26.43897 -25.83123 -23.90765 -23.49294 -22.17376 -21.71217 -20.86099 -20.04552 -18.87910 -18.46891 -17.86698 -17.73475 -17.01723 -16.96018 -16.74459 -16.37942 -16.12210 -15.97520 -15.65107 -15.50465 -15.33740 -15.08490 -14.61897 -14.29102 -14.06193 -13.95395 -13.79064 -13.58874 -13.56328 -13.34087 -13.29729 -12.96113 -12.88453 -12.75203 -12.36072 -12.22887 -12.13095 -12.07011 -12.01698 -11.85132 -11.81053 -11.66128 -11.45206 -11.36842 -11.04927 -10.73770 -10.71237 -10.69000 -10.61224 -9.62351 -8.91143 -7.88912 -5.23323 1.41770 1.44225 1.54050 1.55685 1.73054 2.46945 2.85091 2.88899 3.28464 3.52323 3.61311 3.68824 3.86168 3.95630 4.06243 4.12993 4.16115 4.22242 4.22483 4.27560 4.31766 4.33155 4.43660 4.45148 4.47099 4.55767 4.57193 4.58738 4.65898 4.68347 4.78285 4.83062 4.84710 4.85730 4.91588 4.94260 4.98244 5.09560 5.17912 5.19686 5.38073 5.42775 5.43336 5.54514 5.57442 5.68882 5.76203 6.06889 6.18408 6.26620 6.44125 7.08607 7.16971 7.75775 8.41099 9.21907 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.002273 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.122787 B =12316.285524 C =14094.189387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.054 3.946 4 C 0.056 3.944 5 O -0.400 6.400 6 C 0.052 3.948 7 C 0.501 3.499 8 O -0.584 6.584 9 N -0.606 5.606 10 C 0.098 3.902 11 C -0.130 4.130 12 C -0.112 4.112 13 C -0.074 4.074 14 H 0.056 0.944 15 C -0.075 4.075 16 H 0.082 0.918 17 C -0.118 4.118 18 C 0.182 3.818 19 N -0.630 5.630 20 C -0.247 4.247 21 H 0.075 0.925 22 C -0.066 4.066 23 N -0.948 5.948 24 Si 0.979 3.021 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.273 1.273 28 C 0.135 3.865 29 C 0.119 3.881 30 H 0.062 0.938 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.050 0.950 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.118 0.882 39 H 0.093 0.907 40 H 0.113 0.887 41 H 0.108 0.892 42 H 0.059 0.941 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.003 0.997 48 H 0.010 0.990 49 H 0.248 0.752 50 H 0.032 0.968 51 H 0.006 0.994 52 H 0.080 0.920 53 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.487 21.458 26.378 34.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.339 6.339 3 C -0.022 4.022 4 C -0.020 4.020 5 O -0.319 6.319 6 C -0.027 4.027 7 C 0.290 3.710 8 O -0.463 6.463 9 N -0.340 5.340 10 C -0.022 4.022 11 C -0.168 4.168 12 C -0.149 4.149 13 C -0.093 4.093 14 H 0.074 0.926 15 C -0.095 4.095 16 H 0.100 0.900 17 C -0.156 4.156 18 C 0.057 3.943 19 N -0.356 5.356 20 C -0.376 4.376 21 H 0.093 0.907 22 C -0.259 4.259 23 N -0.597 5.597 24 Si 0.806 3.194 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.198 1.198 28 C 0.010 3.990 29 C -0.004 4.004 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.105 0.895 33 H 0.115 0.885 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.118 0.882 37 H 0.124 0.876 38 H 0.135 0.865 39 H 0.111 0.889 40 H 0.131 0.869 41 H 0.126 0.874 42 H 0.078 0.922 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.082 0.918 47 H 0.022 0.978 48 H 0.028 0.972 49 H 0.057 0.943 50 H 0.051 0.949 51 H 0.024 0.976 52 H 0.098 0.902 53 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.951 20.955 25.690 33.388 hybrid contribution -0.673 -0.826 -1.429 1.783 sum -4.624 20.129 24.261 31.862 Atomic orbital electron populations 1.22882 0.79779 1.03459 1.00860 1.87932 1.21304 1.29098 1.95598 1.22799 0.92556 0.84866 1.01979 1.22880 0.93648 0.99189 0.86233 1.88062 1.21009 1.82949 1.39923 1.22371 0.83618 1.02613 0.94131 1.21130 0.82190 0.78630 0.89082 1.90731 1.48334 1.53900 1.53352 1.48198 1.05971 1.60358 1.19462 1.22197 0.88324 0.98122 0.93593 1.21932 1.00659 0.97146 0.97057 1.21581 0.95827 1.01865 0.95660 1.21306 0.97342 0.95805 0.94878 0.92569 1.22192 0.95882 0.96404 0.95043 0.89996 1.22726 1.00850 0.95483 0.96524 1.20953 0.88386 0.94190 0.90780 1.44843 1.30764 1.41967 1.18042 1.19437 1.13290 1.10180 0.94728 0.90665 1.25687 0.98676 0.98658 1.02888 1.70206 1.22711 1.25070 1.41735 0.85067 0.78199 0.77142 0.78966 1.20932 1.21637 1.19767 1.21740 0.95160 0.90363 0.91714 1.21526 0.99078 0.94646 0.85151 0.91965 0.93997 0.89505 0.88505 0.93186 0.91206 0.88156 0.87564 0.86456 0.88926 0.86910 0.87358 0.92200 0.90949 0.90433 0.89326 0.91775 0.97838 0.97190 0.94292 0.94919 0.97605 0.90208 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 11.01 113.37 1.25 1.64 16 2 O -0.42 -9.21 10.67 -144.34 -1.54 -10.75 16 3 C 0.05 0.80 6.32 71.98 0.45 1.26 16 4 C 0.06 0.75 6.32 71.98 0.45 1.20 16 5 O -0.40 -9.42 9.84 -125.55 -1.24 -10.66 16 6 C 0.05 0.85 4.76 71.24 0.34 1.19 16 7 C 0.50 13.49 7.78 87.66 0.68 14.17 16 8 O -0.58 -23.41 15.92 15.99 0.25 -23.15 16 9 N -0.61 -13.09 2.97 -818.96 -2.43 -15.53 16 10 C 0.10 1.03 6.34 86.36 0.55 1.58 16 11 C -0.13 -1.47 6.08 30.67 0.19 -1.28 16 12 C -0.11 -1.94 5.04 30.62 0.15 -1.79 16 13 C -0.07 -1.93 1.84 -10.73 -0.02 -1.95 16 14 H 0.06 1.69 8.11 -2.39 -0.02 1.67 16 15 C -0.08 -2.57 2.57 -9.40 -0.02 -2.59 16 16 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 17 C -0.12 -4.34 5.58 31.79 0.18 -4.16 16 18 C 0.18 9.47 5.38 86.73 0.47 9.94 16 19 N -0.63 -35.13 3.39 -691.97 -2.35 -37.48 16 20 C -0.25 -15.00 10.26 84.03 0.86 -14.14 16 21 H 0.08 4.44 7.84 -2.91 -0.02 4.42 16 22 C -0.07 -3.99 5.48 84.86 0.47 -3.52 16 23 N -0.95 -59.64 10.36 21.65 0.22 -59.42 16 24 Si 0.98 48.38 29.56 68.60 2.03 50.41 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 27 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 28 C 0.14 6.14 5.74 86.86 0.50 6.64 16 29 C 0.12 3.23 5.40 86.35 0.47 3.70 16 30 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 31 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 34 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.10 0.59 8.14 -2.39 -0.02 0.58 16 37 H 0.11 1.14 7.69 -2.39 -0.02 1.12 16 38 H 0.12 0.95 7.94 -2.38 -0.02 0.93 16 39 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 40 H 0.11 0.46 5.93 -2.39 -0.01 0.45 16 41 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 42 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 43 H 0.07 1.28 7.45 -2.39 -0.02 1.26 16 44 H 0.08 1.19 8.14 -2.39 -0.02 1.18 16 45 H 0.09 2.75 8.11 -2.39 -0.02 2.73 16 46 H 0.06 2.25 8.01 -2.39 -0.02 2.23 16 47 H 0.00 0.20 7.39 -2.39 -0.02 0.18 16 48 H 0.01 0.57 7.52 -2.39 -0.02 0.55 16 49 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 50 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.01 0.29 8.04 -2.39 -0.02 0.27 16 52 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 53 H 0.06 2.01 6.42 -2.39 -0.02 2.00 16 Total: -1.00 -89.53 412.69 2.77 -86.77 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.86 Total: 7.93 kcal Atomic # 6 Polarization: 4.92 SS G_CDS: 6.96 Total: 11.88 kcal Atomic # 7 Polarization: -107.87 SS G_CDS: -4.56 Total: -112.43 kcal Atomic # 8 Polarization: -42.04 SS G_CDS: -2.52 Total: -44.56 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -89.53 2.77 -86.77 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485081960.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.642 kcal (2) G-P(sol) polarization free energy of solvation -89.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds