Wall clock time and date at job start Sat Apr 11 2020 06:12:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42903 * 114.00186 * 2 1 4 4 C 1.53002 * 109.47015 * 180.02562 * 3 2 1 5 5 C 1.50695 * 109.61651 * 300.22581 * 4 3 2 6 6 O 1.21288 * 120.00009 * 239.78270 * 5 4 3 7 7 N 1.34779 * 120.00439 * 59.77752 * 5 4 3 8 8 C 1.46493 * 120.00224 * 180.02562 * 7 5 4 9 9 H 1.09002 * 110.01940 * 325.69485 * 8 7 5 10 10 C 1.54259 * 110.03677 * 87.09229 * 8 7 5 11 11 C 1.54883 * 104.20045 * 142.89348 * 10 8 7 12 12 C 1.54892 * 102.74825 * 322.05824 * 11 10 8 13 13 H 1.09000 * 110.48715 * 279.12751 * 12 11 10 14 14 C 1.53005 * 110.48720 * 156.62010 * 12 11 10 15 15 N 1.46495 * 109.47198 * 66.45401 * 14 12 11 16 16 C 1.36940 * 120.00012 * 179.97438 * 15 14 12 17 17 H 1.08001 * 119.99477 * 0.02562 * 16 15 14 18 18 C 1.38803 * 120.00129 * 180.02562 * 16 15 14 19 19 N 1.31622 * 120.00224 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47038 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.46896 * 120.00050 * 20 18 16 23 23 H 1.48500 * 109.47502 * 239.99984 * 20 18 16 24 24 C 1.53878 * 110.03038 * 204.31035 * 8 7 5 25 25 C 1.53176 * 109.53933 * 180.02562 * 4 3 2 26 26 C 1.53091 * 109.21206 * 183.12122 * 25 4 3 27 27 O 1.43035 * 109.34424 * 57.57779 * 26 25 4 28 28 C 1.42902 * 114.13534 * 298.88074 * 27 26 25 29 29 C 1.53097 * 109.41493 * 61.15611 * 28 27 26 30 30 H 1.08997 * 109.47068 * 59.99109 * 1 2 3 31 31 H 1.08991 * 109.47353 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.46956 * 299.99632 * 1 2 3 33 33 H 1.09002 * 109.46490 * 60.00588 * 3 2 1 34 34 H 1.08998 * 109.47181 * 300.00899 * 3 2 1 35 35 H 0.97003 * 119.99720 * 359.97438 * 7 5 4 36 36 H 1.09000 * 110.49046 * 261.57710 * 10 8 7 37 37 H 1.09004 * 110.48980 * 24.08280 * 10 8 7 38 38 H 1.08999 * 110.76185 * 80.37174 * 11 10 8 39 39 H 1.08997 * 110.76427 * 203.56179 * 11 10 8 40 40 H 1.09003 * 109.46974 * 186.45794 * 14 12 11 41 41 H 1.09001 * 109.46682 * 306.45259 * 14 12 11 42 42 H 0.97003 * 119.99793 * 0.02562 * 15 14 12 43 43 H 0.96995 * 120.00013 * 179.97438 * 19 18 16 44 44 H 1.09000 * 110.03500 * 0.02562 * 24 8 7 45 45 H 1.09001 * 110.03307 * 121.43238 * 24 8 7 46 46 H 1.09002 * 109.52410 * 303.05964 * 25 4 3 47 47 H 1.09004 * 109.52533 * 63.18610 * 25 4 3 48 48 H 1.09007 * 109.48127 * 177.62276 * 26 25 4 49 49 H 1.09000 * 109.48171 * 297.66002 * 26 25 4 50 50 H 1.08997 * 109.47976 * 301.17973 * 28 27 26 51 51 H 1.08996 * 109.49557 * 181.14748 * 28 27 26 52 52 H 1.08995 * 109.52587 * 182.48591 * 29 28 27 53 53 H 1.09004 * 109.57034 * 62.33092 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 3.9839 0.4320 1.2255 6 8 4.7299 0.9607 2.0225 7 7 3.5560 -0.8284 1.4368 8 6 3.9914 -1.5597 2.6291 9 1 5.0129 -1.2796 2.8863 10 6 3.0467 -1.2556 3.8100 11 6 2.9371 -2.6031 4.5657 12 6 2.9139 -3.6395 3.4148 13 1 1.9137 -3.7129 2.9877 14 6 3.3822 -5.0071 3.9162 15 7 2.4096 -5.5345 4.8763 16 6 2.6181 -6.7547 5.4621 17 1 3.4999 -7.3279 5.2164 18 6 1.6963 -7.2546 6.3714 19 7 0.6215 -6.5563 6.6704 20 14 1.9805 -8.9193 7.1698 21 1 3.2527 -9.4982 6.6682 22 1 2.0593 -8.7544 8.6436 23 1 0.8557 -9.8284 6.8330 24 6 3.9082 -3.0755 2.3773 25 6 4.1603 2.5831 0.0000 26 6 5.6837 2.4544 -0.0794 27 8 6.0365 1.7197 -1.2548 28 6 5.5195 0.3879 -1.2886 29 6 3.9896 0.4350 -1.2569 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8465 -0.8899 35 1 2.9590 -1.2511 0.7996 36 1 3.4772 -0.4901 4.4556 37 1 2.0692 -0.9400 3.4452 38 1 3.8045 -2.7579 5.2074 39 1 2.0161 -2.6465 5.1469 40 1 3.4693 -5.6928 3.0733 41 1 4.3526 -4.9032 4.4017 42 1 1.6175 -5.0198 5.0966 43 1 -0.0228 -6.9059 7.3056 44 1 3.5443 -3.2670 1.3679 45 1 4.8891 -3.5310 2.5133 46 1 3.7969 3.1449 -0.8605 47 1 3.8861 3.1042 0.9173 48 1 6.1308 3.4477 -0.1218 49 1 6.0504 1.9278 0.8017 50 1 5.8840 -0.1656 -0.4233 51 1 5.8490 -0.1071 -2.2021 52 1 3.5941 -0.5805 -1.2381 53 1 3.6218 0.9528 -2.1429 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486201987.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:09 Heat of formation + Delta-G solvation = -155.021239 kcal Electronic energy + Delta-G solvation = -31559.663177 eV Core-core repulsion = 27429.978693 eV Total energy + Delta-G solvation = -4129.684484 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.05358 -39.97826 -38.75783 -38.66178 -36.46150 -35.25093 -34.64912 -32.90695 -31.98793 -30.16676 -29.38763 -28.79660 -26.93828 -26.25840 -24.61170 -24.35555 -23.91759 -23.09863 -21.37067 -20.97122 -20.46843 -19.08010 -17.91925 -17.71417 -17.44501 -17.03149 -16.85098 -16.68931 -16.54236 -16.26212 -15.85280 -15.75012 -15.47772 -15.28154 -15.13158 -14.78946 -14.62192 -14.43631 -14.32466 -13.56089 -13.39160 -13.26803 -13.21899 -13.14325 -13.00289 -12.83370 -12.79762 -12.40388 -12.32263 -12.21808 -12.11995 -12.09743 -11.79760 -11.63777 -11.62475 -11.54676 -11.49677 -11.45010 -10.91973 -10.81291 -10.59532 -10.34816 -9.93083 -8.97684 -7.94741 -5.22823 1.47159 1.47920 1.58052 1.60272 2.20833 2.56360 2.65584 2.94724 3.38856 3.52263 3.54136 3.58728 3.62869 3.79695 3.89502 3.97992 4.05491 4.18694 4.25412 4.35536 4.39869 4.43133 4.50075 4.51761 4.56266 4.58707 4.61056 4.63514 4.65125 4.70142 4.72152 4.76533 4.79766 4.84589 4.86986 4.95879 5.03991 5.04932 5.07012 5.08310 5.13654 5.19232 5.27165 5.37257 5.48389 5.54952 5.67628 6.12579 6.22496 6.28306 6.65442 7.31874 7.34456 8.11784 8.35029 9.29193 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.002292 C = 0.002196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.455087 B =12211.232474 C =12748.258102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.404 6.404 3 C 0.077 3.923 4 C -0.075 4.075 5 C 0.520 3.480 6 O -0.578 6.578 7 N -0.699 5.699 8 C 0.147 3.853 9 H 0.076 0.924 10 C -0.119 4.119 11 C -0.108 4.108 12 C -0.086 4.086 13 H 0.072 0.928 14 C 0.158 3.842 15 N -0.744 5.744 16 C -0.243 4.243 17 H 0.074 0.926 18 C -0.077 4.077 19 N -0.970 5.970 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.294 1.294 23 H -0.292 1.292 24 C -0.109 4.109 25 C -0.124 4.124 26 C 0.049 3.951 27 O -0.397 6.397 28 C 0.053 3.947 29 C -0.131 4.131 30 H 0.059 0.941 31 H 0.093 0.907 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.415 0.585 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.021 0.979 41 H 0.018 0.982 42 H 0.374 0.626 43 H 0.251 0.749 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.100 0.900 47 H 0.077 0.923 48 H 0.106 0.894 49 H 0.051 0.949 50 H 0.031 0.969 51 H 0.115 0.885 52 H 0.092 0.908 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 20.701 -21.302 29.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.323 6.323 3 C 0.000 4.000 4 C -0.079 4.079 5 C 0.307 3.693 6 O -0.459 6.459 7 N -0.351 5.351 8 C 0.042 3.958 9 H 0.094 0.906 10 C -0.158 4.158 11 C -0.146 4.146 12 C -0.105 4.105 13 H 0.090 0.910 14 C 0.032 3.968 15 N -0.387 5.387 16 C -0.375 4.375 17 H 0.092 0.908 18 C -0.269 4.269 19 N -0.621 5.621 20 Si 0.802 3.198 21 H -0.191 1.191 22 H -0.221 1.221 23 H -0.219 1.219 24 C -0.147 4.147 25 C -0.162 4.162 26 C -0.027 4.027 27 O -0.316 6.316 28 C -0.023 4.023 29 C -0.169 4.169 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.105 0.895 35 H 0.255 0.745 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.070 0.930 40 H 0.039 0.961 41 H 0.036 0.964 42 H 0.206 0.794 43 H 0.060 0.940 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.119 0.881 47 H 0.096 0.904 48 H 0.124 0.876 49 H 0.070 0.930 50 H 0.050 0.950 51 H 0.133 0.867 52 H 0.110 0.890 53 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.464 20.796 -20.883 29.807 hybrid contribution -1.009 -0.909 1.188 1.804 sum 3.455 19.887 -19.695 28.201 Atomic orbital electron populations 1.22865 0.79116 1.03772 1.00772 1.87660 1.21441 1.27647 1.95572 1.22500 0.89821 0.85474 1.02218 1.20995 0.95977 0.97073 0.93807 1.20793 0.79437 0.81984 0.87056 1.90640 1.37965 1.68655 1.48599 1.46257 1.49533 1.14253 1.25092 1.21473 0.98083 0.91354 0.84878 0.90616 1.22634 0.99720 0.96790 0.96646 1.22352 1.01193 0.93966 0.97079 1.22011 0.99349 0.93471 0.95621 0.90962 1.20867 0.91817 0.93036 0.91102 1.42571 1.25472 1.20299 1.50331 1.19681 1.04578 0.95655 1.17553 0.90781 1.25558 0.97291 1.02527 1.01561 1.69822 1.13254 1.39984 1.39043 0.85080 0.77485 0.79614 0.77635 1.19091 1.22129 1.21917 1.22326 1.00158 0.92701 0.99535 1.21961 0.96182 0.93909 1.04147 1.22834 0.94612 0.97437 0.87805 1.87903 1.75274 1.26210 1.42226 1.22720 0.93361 0.83776 1.02481 1.22189 0.96085 1.02282 0.96356 0.92257 0.88898 0.94147 0.93101 0.89475 0.74535 0.92320 0.91166 0.92397 0.92961 0.96087 0.96418 0.79380 0.94041 0.89268 0.90141 0.88108 0.90411 0.87588 0.93035 0.95046 0.86723 0.88962 0.88160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.40 -5.50 7.61 -148.98 -1.13 -6.64 16 3 C 0.08 0.94 4.81 71.98 0.35 1.29 16 4 C -0.08 -1.16 0.53 -52.81 -0.03 -1.19 16 5 C 0.52 11.59 5.14 87.66 0.45 12.04 16 6 O -0.58 -17.02 13.50 -3.06 -0.04 -17.06 16 7 N -0.70 -14.51 4.57 -439.11 -2.01 -16.51 16 8 C 0.15 3.58 3.23 45.72 0.15 3.73 16 9 H 0.08 2.07 7.59 -2.39 -0.02 2.05 16 10 C -0.12 -3.22 6.53 31.66 0.21 -3.01 16 11 C -0.11 -3.45 6.01 31.88 0.19 -3.26 16 12 C -0.09 -2.66 2.93 -9.68 -0.03 -2.69 16 13 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 14 C 0.16 6.29 5.55 86.38 0.48 6.77 16 15 N -0.74 -38.18 5.44 -343.45 -1.87 -40.05 16 16 C -0.24 -13.74 9.99 84.03 0.84 -12.90 16 17 H 0.07 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.49 5.50 84.86 0.47 -4.02 16 19 N -0.97 -59.87 13.06 21.65 0.28 -59.59 16 20 Si 0.97 46.57 29.55 68.60 2.03 48.60 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 22 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 23 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 24 C -0.11 -2.58 6.15 31.36 0.19 -2.39 16 25 C -0.12 -1.85 4.56 30.68 0.14 -1.71 16 26 C 0.05 0.93 6.57 72.01 0.47 1.40 16 27 O -0.40 -7.90 10.77 -148.98 -1.60 -9.51 16 28 C 0.05 0.87 6.62 72.01 0.48 1.34 16 29 C -0.13 -1.68 4.67 30.69 0.14 -1.54 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.41 7.44 5.68 -92.71 -0.53 6.91 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 38 H 0.06 1.97 8.02 -2.39 -0.02 1.95 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.02 0.72 8.10 -2.39 -0.02 0.70 16 42 H 0.37 20.35 7.52 -92.71 -0.70 19.66 16 43 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 44 H 0.09 1.77 7.61 -2.39 -0.02 1.75 16 45 H 0.08 1.88 7.84 -2.39 -0.02 1.86 16 46 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 47 H 0.08 1.25 8.03 -2.38 -0.02 1.23 16 48 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 49 H 0.05 1.26 5.80 -2.39 -0.01 1.25 16 50 H 0.03 0.63 7.38 -2.39 -0.02 0.61 16 51 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 52 H 0.09 1.09 7.19 -2.39 -0.02 1.07 16 53 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -70.55 406.39 1.07 -69.48 By element: Atomic # 1 Polarization: 36.17 SS G_CDS: -0.33 Total: 35.84 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: 5.75 Total: -4.57 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.59 Total: -116.15 kcal Atomic # 8 Polarization: -30.42 SS G_CDS: -2.78 Total: -33.20 kcal Atomic # 14 Polarization: 46.57 SS G_CDS: 2.03 Total: 48.60 kcal Total: -70.55 1.07 -69.48 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486201987.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.544 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds