Wall clock time and date at job start Sat Apr 11 2020 06:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99848 * 2 1 4 4 C 1.52996 * 109.47248 * 89.99806 * 3 2 1 5 5 H 1.08998 * 109.46876 * 304.99609 * 4 3 2 6 6 O 1.42894 * 109.47458 * 64.99821 * 4 3 2 7 7 C 1.53006 * 109.47159 * 185.00104 * 4 3 2 8 8 N 1.46494 * 109.47167 * 179.97438 * 7 4 3 9 9 C 1.36934 * 120.00016 * 179.97438 * 8 7 4 10 10 H 1.08008 * 120.00173 * 0.02562 * 9 8 7 11 11 C 1.38810 * 120.00547 * 180.02562 * 9 8 7 12 12 N 1.31627 * 119.99737 * 0.02562 * 11 9 8 13 13 Si 1.86795 * 120.00547 * 180.02562 * 11 9 8 14 14 H 1.48505 * 109.47182 * 90.00037 * 13 11 9 15 15 H 1.48502 * 109.47369 * 209.99773 * 13 11 9 16 16 H 1.48504 * 109.47173 * 329.99873 * 13 11 9 17 17 C 1.34780 * 120.00081 * 180.26850 * 2 1 3 18 18 O 1.21280 * 119.99867 * 185.14742 * 17 2 1 19 19 C 1.50700 * 119.99875 * 5.14262 * 17 2 1 20 20 C 1.53005 * 112.84765 * 293.75723 * 19 17 2 21 21 H 1.09004 * 109.48068 * 64.81687 * 20 19 17 22 22 C 1.53092 * 109.48337 * 304.78565 * 20 19 17 23 23 C 1.53177 * 109.16141 * 182.41076 * 22 20 19 24 24 C 1.53173 * 109.03913 * 56.98035 * 23 22 20 25 25 C 1.53090 * 109.16386 * 303.01789 * 24 23 22 26 26 O 1.42900 * 109.47802 * 184.84150 * 20 19 17 27 27 C 1.53773 * 113.61386 * 162.45425 * 19 17 2 28 28 C 1.53787 * 87.07808 * 220.01789 * 27 19 17 29 29 C 1.53771 * 87.08223 * 25.43326 * 28 27 19 30 30 H 1.08992 * 109.47265 * 264.56868 * 1 2 3 31 31 H 1.09002 * 109.46942 * 24.57344 * 1 2 3 32 32 H 1.08995 * 109.46711 * 144.56354 * 1 2 3 33 33 H 1.09005 * 109.46796 * 209.99463 * 3 2 1 34 34 H 1.08994 * 109.46884 * 329.99497 * 3 2 1 35 35 H 0.96700 * 114.00419 * 60.00176 * 6 4 3 36 36 H 1.09002 * 109.46722 * 300.00028 * 7 4 3 37 37 H 1.08995 * 109.47292 * 59.99177 * 7 4 3 38 38 H 0.97000 * 119.99851 * 359.97438 * 8 7 4 39 39 H 0.96999 * 120.00078 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.52013 * 302.31330 * 22 20 19 41 41 H 1.08996 * 109.51983 * 62.50578 * 22 20 19 42 42 H 1.08998 * 109.53965 * 176.84976 * 23 22 20 43 43 H 1.08997 * 109.54256 * 297.11145 * 23 22 20 44 44 H 1.09002 * 109.52093 * 62.92072 * 24 23 22 45 45 H 1.08998 * 109.52338 * 183.11202 * 24 23 22 46 46 H 1.09000 * 109.48279 * 177.59132 * 25 24 23 47 47 H 1.08997 * 109.47995 * 297.61663 * 25 24 23 48 48 H 1.08998 * 113.61654 * 334.56375 * 27 19 17 49 49 H 1.09004 * 113.61749 * 105.47318 * 27 19 17 50 50 H 1.08997 * 113.61103 * 270.87752 * 28 27 19 51 51 H 1.09009 * 113.61222 * 139.98011 * 28 27 19 52 52 H 1.08998 * 113.61422 * 220.02017 * 29 28 27 53 53 H 1.09007 * 113.69677 * 89.12550 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7105 1.4425 5 1 1.5061 1.7551 1.9814 6 8 3.3208 0.7727 2.0814 7 6 3.1060 3.0940 1.4443 8 7 3.3495 3.5172 2.8254 9 6 3.9314 4.7309 3.0771 10 1 4.2103 5.3765 2.2573 11 6 4.1627 5.1318 4.3858 12 7 3.8232 4.3450 5.3848 13 14 4.9557 6.7879 4.7291 14 1 3.9004 7.8243 4.8607 15 1 5.7347 6.7116 5.9911 16 1 5.8626 7.1443 3.6084 17 6 2.1390 -1.1672 -0.0055 18 8 3.3481 -1.1697 0.0888 19 6 1.3900 -2.4691 -0.1286 20 6 0.5036 -2.7615 1.0838 21 1 -0.2844 -2.0111 1.1474 22 6 1.3515 -2.7209 2.3579 23 6 0.4700 -3.0736 3.5599 24 6 -0.1649 -4.4481 3.3277 25 6 -0.9542 -4.4220 2.0162 26 8 -0.0823 -4.0574 0.9443 27 6 2.2779 -3.6536 -0.5448 28 6 1.1135 -4.1103 -1.4395 29 6 0.6674 -2.6392 -1.4753 30 1 -0.3633 -0.0973 1.0230 31 1 -0.3633 0.9346 -0.4274 32 1 -0.3632 -0.8373 -0.5958 33 1 3.1500 1.1384 -0.5138 34 1 1.6085 2.0283 -0.5139 35 1 4.1836 0.6812 1.6544 36 1 4.0523 3.0494 0.9052 37 1 2.4436 3.8093 0.9568 38 1 3.0986 2.9376 3.5616 39 1 3.9845 4.6252 6.2993 40 1 2.1640 -3.4429 2.2778 41 1 1.7635 -1.7204 2.4894 42 1 1.0793 -3.1013 4.4632 43 1 -0.3136 -2.3239 3.6699 44 1 0.6171 -5.2050 3.2672 45 1 -0.8373 -4.6829 4.1529 46 1 -1.3729 -5.4099 1.8242 47 1 -1.7615 -3.6936 2.0922 48 1 3.1669 -3.3582 -1.1020 49 1 2.4978 -4.3423 0.2710 50 1 0.4070 -4.7688 -0.9343 51 1 1.4321 -4.4937 -2.4090 52 1 -0.4129 -2.5088 -1.4107 53 1 1.1152 -2.0652 -2.2866 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486289112.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:21 Heat of formation + Delta-G solvation = -121.368396 kcal Electronic energy + Delta-G solvation = -32315.103864 eV Core-core repulsion = 28186.878677 eV Total energy + Delta-G solvation = -4128.225187 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.25177 -40.15842 -38.91213 -37.94434 -36.44037 -35.83721 -34.58303 -33.21845 -32.27830 -31.00692 -28.39146 -27.99515 -26.62135 -26.59842 -25.06357 -24.63569 -23.85589 -22.66317 -21.22016 -21.02320 -19.66665 -19.24606 -18.25300 -17.85748 -17.23947 -17.13935 -16.69466 -16.51409 -16.35392 -16.11860 -15.91737 -15.57160 -15.18702 -15.13270 -14.99828 -14.82167 -14.53050 -14.08208 -13.95847 -13.74604 -13.59397 -13.45742 -13.31169 -13.16740 -12.96126 -12.88261 -12.76113 -12.46292 -12.34641 -12.23446 -12.19066 -12.04570 -11.99460 -11.87707 -11.82565 -11.43529 -11.24274 -11.12779 -10.98584 -10.92662 -10.53061 -10.31913 -9.54166 -9.02982 -7.96139 -5.26276 1.44789 1.47629 1.55911 1.57630 2.01093 2.54011 2.72777 3.31403 3.35421 3.48354 3.49400 3.68311 3.77222 3.83471 3.89387 3.95194 3.98524 4.07076 4.12814 4.13903 4.21064 4.27886 4.30808 4.44883 4.52705 4.58360 4.59164 4.64440 4.65994 4.74423 4.78834 4.82796 4.85776 4.89766 4.89991 4.93344 5.01995 5.04796 5.13164 5.17582 5.18816 5.24568 5.28977 5.36170 5.44376 5.51946 5.65595 6.24339 6.26794 6.40479 6.80475 7.22079 7.30740 8.07244 8.30228 9.27287 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016747 B = 0.002764 C = 0.002525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.561636 B =10129.190625 C =11085.478236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.606 5.606 3 C 0.095 3.905 4 C 0.098 3.902 5 H 0.086 0.914 6 O -0.563 6.563 7 C 0.124 3.876 8 N -0.741 5.741 9 C -0.248 4.248 10 H 0.078 0.922 11 C -0.079 4.079 12 N -0.970 5.970 13 Si 0.978 3.022 14 H -0.283 1.283 15 H -0.296 1.296 16 H -0.269 1.269 17 C 0.533 3.467 18 O -0.567 6.567 19 C -0.100 4.100 20 C 0.128 3.872 21 H 0.080 0.920 22 C -0.147 4.147 23 C -0.122 4.122 24 C -0.151 4.151 25 C 0.056 3.944 26 O -0.372 6.372 27 C -0.113 4.113 28 C -0.121 4.121 29 C -0.111 4.111 30 H 0.054 0.946 31 H 0.097 0.903 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.117 0.883 35 H 0.374 0.626 36 H 0.021 0.979 37 H 0.041 0.959 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.055 0.945 41 H 0.048 0.952 42 H 0.057 0.943 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.115 0.885 47 H 0.062 0.938 48 H 0.069 0.931 49 H 0.061 0.939 50 H 0.105 0.895 51 H 0.075 0.925 52 H 0.097 0.903 53 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.452 -20.052 -15.512 29.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.337 5.337 3 C -0.029 4.029 4 C 0.037 3.963 5 H 0.104 0.896 6 O -0.369 6.369 7 C -0.004 4.004 8 N -0.384 5.384 9 C -0.380 4.380 10 H 0.096 0.904 11 C -0.271 4.271 12 N -0.621 5.621 13 Si 0.806 3.194 14 H -0.210 1.210 15 H -0.223 1.223 16 H -0.193 1.193 17 C 0.321 3.679 18 O -0.445 6.445 19 C -0.104 4.104 20 C 0.070 3.930 21 H 0.098 0.902 22 C -0.185 4.185 23 C -0.160 4.160 24 C -0.189 4.189 25 C -0.020 4.020 26 O -0.291 6.291 27 C -0.151 4.151 28 C -0.158 4.158 29 C -0.148 4.148 30 H 0.073 0.927 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.094 0.906 34 H 0.135 0.865 35 H 0.222 0.778 36 H 0.039 0.961 37 H 0.059 0.941 38 H 0.206 0.794 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.076 0.924 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.108 0.892 46 H 0.133 0.867 47 H 0.080 0.920 48 H 0.088 0.912 49 H 0.080 0.920 50 H 0.123 0.877 51 H 0.093 0.907 52 H 0.115 0.885 53 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -15.229 -20.066 -15.296 29.471 hybrid contribution 1.357 1.231 1.079 2.127 sum -13.872 -18.835 -14.218 27.374 Atomic orbital electron populations 1.22341 0.77669 1.05612 1.02519 1.47747 1.08041 1.05009 1.72910 1.22110 0.98846 0.86021 0.95875 1.22392 0.93169 0.86952 0.93768 0.89559 1.86515 1.29551 1.62932 1.57891 1.21444 0.97541 0.94696 0.86704 1.42457 1.73746 1.19379 1.02789 1.19672 1.31135 0.94993 0.92151 0.90444 1.25655 1.03407 1.02485 0.95523 1.69864 1.55007 1.38874 0.98326 0.85082 0.77981 0.79271 0.77057 1.21005 1.22310 1.19350 1.20527 0.87313 0.85397 0.74639 1.90643 1.16064 1.87489 1.50335 1.22081 0.98335 0.92416 0.97534 1.21572 0.93767 0.86580 0.91047 0.90204 1.22085 0.98986 1.01214 0.96198 1.21579 0.99058 0.98178 0.97187 1.22173 1.00763 0.96447 0.99520 1.22790 0.91427 1.02181 0.85637 1.87924 1.63204 1.33072 1.44943 1.22705 0.97211 0.95278 0.99864 1.22836 0.97183 0.96265 0.99509 1.22920 1.01091 0.97781 0.93018 0.92717 0.88477 0.88705 0.90574 0.86545 0.77845 0.96101 0.94144 0.79440 0.94056 0.92668 0.93346 0.92390 0.91404 0.91795 0.89245 0.86668 0.91994 0.91220 0.92022 0.87691 0.90680 0.88479 0.89852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.89 8.98 127.77 1.15 2.04 16 2 N -0.61 -13.76 2.86 -846.76 -2.42 -16.18 16 3 C 0.10 2.39 5.14 86.38 0.44 2.83 16 4 C 0.10 3.29 3.30 30.60 0.10 3.40 16 5 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 6 O -0.56 -22.47 11.82 -136.75 -1.62 -24.09 16 7 C 0.12 4.96 5.92 86.38 0.51 5.47 16 8 N -0.74 -39.48 5.49 -343.46 -1.89 -41.36 16 9 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 10 H 0.08 4.23 7.83 -2.91 -0.02 4.21 16 11 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 12 N -0.97 -61.86 13.06 21.65 0.28 -61.58 16 13 Si 0.98 47.26 29.55 68.60 2.03 49.29 16 14 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 15 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 16 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 17 C 0.53 14.31 5.17 87.66 0.45 14.76 16 18 O -0.57 -19.93 14.46 9.20 0.13 -19.80 16 19 C -0.10 -2.07 0.30 -52.40 -0.02 -2.09 16 20 C 0.13 2.47 1.98 30.63 0.06 2.53 16 21 H 0.08 1.35 5.40 -2.39 -0.01 1.34 16 22 C -0.15 -3.63 5.04 30.68 0.15 -3.47 16 23 C -0.12 -2.49 6.03 30.71 0.19 -2.30 16 24 C -0.15 -2.22 6.14 30.68 0.19 -2.03 16 25 C 0.06 0.68 6.84 72.01 0.49 1.17 16 26 O -0.37 -6.13 7.29 -148.98 -1.09 -7.22 16 27 C -0.11 -2.46 6.52 31.12 0.20 -2.26 16 28 C -0.12 -1.87 7.53 31.12 0.23 -1.63 16 29 C -0.11 -1.63 5.65 31.12 0.18 -1.45 16 30 H 0.05 0.85 7.19 -2.39 -0.02 0.83 16 31 H 0.10 1.03 7.83 -2.39 -0.02 1.01 16 32 H 0.09 1.04 4.37 -2.39 -0.01 1.03 16 33 H 0.08 2.09 7.49 -2.38 -0.02 2.07 16 34 H 0.12 2.18 7.86 -2.39 -0.02 2.16 16 35 H 0.37 14.49 8.63 -74.06 -0.64 13.85 16 36 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.37 21.87 7.54 -92.71 -0.70 21.17 16 39 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 40 H 0.05 1.52 7.44 -2.39 -0.02 1.50 16 41 H 0.05 1.53 7.38 -2.39 -0.02 1.51 16 42 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 47 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.07 1.73 7.73 -2.39 -0.02 1.71 16 49 H 0.06 1.46 7.48 -2.38 -0.02 1.44 16 50 H 0.10 1.59 6.17 -2.39 -0.01 1.57 16 51 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 52 H 0.10 1.04 7.08 -2.39 -0.02 1.02 16 53 H 0.08 1.24 8.09 -2.38 -0.02 1.22 16 Total: -1.00 -75.43 401.14 0.65 -74.78 By element: Atomic # 1 Polarization: 47.29 SS G_CDS: -0.42 Total: 46.86 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 5.64 Total: -0.70 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -4.02 Total: -119.12 kcal Atomic # 8 Polarization: -48.54 SS G_CDS: -2.57 Total: -51.11 kcal Atomic # 14 Polarization: 47.26 SS G_CDS: 2.03 Total: 49.29 kcal Total: -75.43 0.65 -74.78 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486289112.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.589 kcal (2) G-P(sol) polarization free energy of solvation -75.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds