Wall clock time and date at job start Sat Apr 11 2020 06:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 113.99917 * 2 1 4 4 C 1.52998 * 109.47600 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47167 * 180.02562 * 4 3 2 6 6 O 1.42906 * 109.46839 * 179.97438 * 5 4 3 7 7 C 1.42898 * 113.99948 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47050 * 179.97438 * 7 6 5 9 9 C 1.50706 * 109.47111 * 179.97438 * 8 7 6 10 10 O 1.21275 * 119.99670 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99940 * 179.97438 * 9 8 7 12 12 C 1.46946 * 120.44326 * 180.02562 * 11 9 8 13 13 C 1.53593 * 108.53012 * 125.75429 * 12 11 9 14 14 H 1.09001 * 110.59903 * 172.16221 * 13 12 11 15 15 C 1.53366 * 108.68994 * 294.36025 * 13 12 11 16 16 C 1.53010 * 109.26652 * 60.29528 * 15 13 12 17 17 C 1.53011 * 109.79598 * 60.57101 * 16 15 13 18 18 C 1.53369 * 109.25514 * 299.41734 * 17 16 15 19 19 H 1.08995 * 111.08539 * 177.83495 * 18 17 16 20 20 C 1.46946 * 120.44613 * 359.73283 * 11 9 8 21 21 N 1.47565 * 107.98334 * 56.38267 * 18 17 16 22 22 C 1.36933 * 121.61296 * 122.27916 * 21 18 17 23 23 H 1.08007 * 119.99769 * 152.03979 * 22 21 18 24 24 C 1.38810 * 120.00060 * 332.03632 * 22 21 18 25 25 N 1.31615 * 119.99992 * 341.81779 * 24 22 21 26 26 Si 1.86799 * 120.00076 * 161.81536 * 24 22 21 27 27 H 1.48503 * 109.47367 * 60.00086 * 26 24 22 28 28 H 1.48500 * 109.47122 * 180.02562 * 26 24 22 29 29 H 1.48508 * 109.47191 * 299.99884 * 26 24 22 30 30 H 1.08996 * 109.47407 * 59.99745 * 1 2 3 31 31 H 1.08997 * 109.46796 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47133 * 299.99154 * 1 2 3 33 33 H 1.09011 * 109.46689 * 59.99998 * 3 2 1 34 34 H 1.09001 * 109.47154 * 300.00803 * 3 2 1 35 35 H 1.08998 * 109.47014 * 60.00092 * 4 3 2 36 36 H 1.09002 * 109.46760 * 300.00508 * 4 3 2 37 37 H 1.08998 * 109.47399 * 59.99935 * 5 4 3 38 38 H 1.09002 * 109.46963 * 299.99393 * 5 4 3 39 39 H 1.08999 * 109.46571 * 60.00218 * 7 6 5 40 40 H 1.09000 * 109.47388 * 300.00468 * 7 6 5 41 41 H 1.09000 * 109.47561 * 300.00550 * 8 7 6 42 42 H 1.09011 * 109.46727 * 60.00907 * 8 7 6 43 43 H 1.08993 * 109.63102 * 245.47033 * 12 11 9 44 44 H 1.08999 * 109.62695 * 6.04324 * 12 11 9 45 45 H 1.09002 * 109.50608 * 180.22760 * 15 13 12 46 46 H 1.08997 * 109.50457 * 300.35647 * 15 13 12 47 47 H 1.09003 * 109.41512 * 300.46605 * 16 15 13 48 48 H 1.08998 * 109.41876 * 180.66947 * 16 15 13 49 49 H 1.09000 * 109.50412 * 179.49139 * 17 16 15 50 50 H 1.08995 * 109.54705 * 59.37596 * 17 16 15 51 51 H 1.09003 * 109.61965 * 353.95023 * 20 11 9 52 52 H 1.09005 * 109.62566 * 114.51213 * 20 11 9 53 53 H 0.97000 * 120.00373 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1849 -0.0006 5 6 4.1576 2.5826 0.0000 6 8 5.5822 2.4698 0.0000 7 6 6.2646 3.7253 0.0000 8 6 7.7755 3.4845 0.0006 9 6 8.4952 4.8086 0.0000 10 8 7.8620 5.8429 -0.0004 11 7 9.8425 4.8433 0.0009 12 6 10.5543 6.1288 0.0009 13 6 11.5343 6.1442 1.1834 14 1 12.1780 7.0226 1.1366 15 6 10.7298 6.1188 2.4889 16 6 9.8840 4.8446 2.5359 17 6 10.7949 3.6160 2.4897 18 6 11.5993 3.6316 1.1840 19 1 12.2875 2.7876 1.1373 20 6 10.6195 3.5960 0.0085 21 7 12.3374 4.9078 1.1189 22 6 13.7014 4.9430 1.0036 23 1 14.1810 5.7819 0.5211 24 6 14.4676 3.9007 1.5069 25 7 13.9525 3.0723 2.3905 26 14 16.2298 3.6737 0.9301 27 1 17.0182 4.8890 1.2572 28 1 16.8264 2.4975 1.6126 29 1 16.2455 3.4539 -0.5385 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5137 0.8900 33 1 1.6885 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.8567 0.6442 -0.8909 36 1 3.8574 0.6437 0.8891 37 1 3.8363 3.1230 0.8904 38 1 3.8357 3.1240 -0.8896 39 1 5.9867 4.2898 0.8900 40 1 5.9867 4.2900 -0.8899 41 1 8.0532 2.9200 0.8908 42 1 8.0538 2.9198 -0.8893 43 1 11.1052 6.2424 -0.9327 44 1 9.8383 6.9437 0.1081 45 1 11.4132 6.1335 3.3379 46 1 10.0770 6.9907 2.5311 47 1 9.2078 4.8268 1.6812 48 1 9.3021 4.8297 3.4574 49 1 10.1883 2.7114 2.5326 50 1 11.4783 3.6366 3.3385 51 1 9.9462 2.7461 0.1208 52 1 11.1754 3.5053 -0.9248 53 1 14.4881 2.3442 2.7425 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001499559570.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:15 Heat of formation + Delta-G solvation = -85.544956 kcal Electronic energy + Delta-G solvation = -31170.806969 eV Core-core repulsion = 27044.135203 eV Total energy + Delta-G solvation = -4126.671766 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.69927 -38.66109 -38.10554 -37.52180 -33.97948 -33.45090 -32.83428 -32.10767 -30.90862 -30.33122 -27.48415 -26.86234 -25.68259 -25.06898 -23.93827 -23.06241 -21.92375 -21.49911 -21.07361 -19.27980 -18.26668 -17.58817 -16.95522 -16.84196 -16.46445 -16.03906 -15.83431 -15.49624 -15.02845 -14.94500 -14.67844 -14.37685 -14.15708 -13.93834 -13.55798 -13.35828 -13.09078 -12.87636 -12.69726 -12.48268 -12.24750 -12.07432 -11.92126 -11.83329 -11.76328 -11.58109 -11.33138 -11.21470 -11.13354 -11.09443 -10.88049 -10.70939 -10.33803 -10.15722 -10.10019 -10.08683 -10.02517 -9.72472 -9.67326 -9.38361 -9.30480 -8.54437 -7.89589 -6.64560 -5.86173 -3.29141 2.89052 2.92573 3.34253 3.39214 3.40779 3.42705 3.94893 4.42441 4.56724 4.71383 4.80520 4.85938 4.90901 4.95846 5.01280 5.01953 5.08675 5.15138 5.18687 5.25060 5.29274 5.33655 5.48435 5.69815 5.73126 5.73953 5.75250 5.79228 5.83669 5.86194 5.88512 5.94102 6.01393 6.15786 6.26476 6.39159 6.44768 6.47705 6.60153 6.71079 6.72710 6.85929 6.99574 7.04534 7.06751 7.10050 7.44554 7.53944 7.71185 7.87481 8.33569 8.47601 9.10118 9.72140 10.34305 11.20744 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.002131 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.449766 B =13138.177185 C =13763.939169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.064 3.936 4 C -0.120 4.120 5 C 0.069 3.931 6 O -0.388 6.388 7 C 0.082 3.918 8 C -0.142 4.142 9 C 0.520 3.480 10 O -0.561 6.561 11 N -0.587 5.587 12 C 0.101 3.899 13 C 0.151 3.849 14 H 0.078 0.922 15 C -0.120 4.120 16 C -0.139 4.139 17 C -0.115 4.115 18 C 0.176 3.824 19 H 0.117 0.883 20 C 0.083 3.917 21 N -0.578 5.578 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.005 3.995 25 N -0.897 5.897 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.042 0.958 33 H 0.051 0.949 34 H 0.051 0.949 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.051 0.949 38 H 0.050 0.950 39 H 0.058 0.942 40 H 0.056 0.944 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.062 0.938 44 H 0.081 0.919 45 H 0.057 0.943 46 H 0.041 0.959 47 H 0.077 0.923 48 H 0.030 0.970 49 H 0.036 0.964 50 H 0.074 0.926 51 H 0.073 0.927 52 H 0.065 0.935 53 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -2.603 -4.620 21.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.012 4.012 4 C -0.157 4.157 5 C -0.008 4.008 6 O -0.308 6.308 7 C 0.005 3.995 8 C -0.182 4.182 9 C 0.309 3.691 10 O -0.442 6.442 11 N -0.319 5.319 12 C -0.023 4.023 13 C 0.043 3.957 14 H 0.096 0.904 15 C -0.160 4.160 16 C -0.177 4.177 17 C -0.154 4.154 18 C 0.069 3.931 19 H 0.135 0.865 20 C -0.041 4.041 21 N -0.299 5.299 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.194 4.194 25 N -0.540 5.540 26 Si 0.732 3.268 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.211 1.211 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.076 0.924 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.049 0.951 49 H 0.054 0.946 50 H 0.093 0.907 51 H 0.091 0.909 52 H 0.083 0.917 53 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -20.294 -2.543 -4.550 20.952 hybrid contribution 0.689 0.242 -0.066 0.733 sum -19.605 -2.301 -4.616 20.272 Atomic orbital electron populations 1.22754 0.80807 1.02897 1.00038 1.87877 1.19854 1.27834 1.95442 1.22379 0.93591 0.84825 1.00441 1.21371 0.92505 0.96957 1.04874 1.22247 0.81440 0.96675 1.00479 1.87800 1.17576 1.29848 1.95570 1.22125 0.91010 0.84811 1.01577 1.21550 0.94159 0.96713 1.05728 1.19991 0.82410 0.90648 0.76039 1.90660 1.66176 1.35298 1.52044 1.48144 1.04687 1.08666 1.70397 1.22234 0.95202 0.84823 1.00014 1.21241 0.91406 0.91663 0.91346 0.90433 1.21892 0.98076 0.96490 0.99509 1.22115 0.98646 0.96162 1.00784 1.21844 0.97426 0.94759 1.01384 1.21053 0.90948 0.92006 0.89106 0.86542 1.22639 0.95041 0.84327 1.02097 1.44388 1.02081 0.98722 1.84712 1.19101 0.81232 1.06763 1.30947 0.91564 1.25009 0.97675 1.00110 0.96589 1.69965 1.36717 1.18818 1.28548 0.86377 0.84703 0.77316 0.78384 1.20974 1.21693 1.21081 0.94018 0.89499 0.93984 0.93024 0.93074 0.90131 0.90064 0.93089 0.93157 0.92411 0.92522 0.87843 0.88224 0.91984 0.90039 0.92384 0.94030 0.90546 0.95073 0.94577 0.90700 0.90851 0.91683 0.93500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 11.01 101.05 1.11 1.30 16 2 O -0.39 -3.63 10.70 -35.23 -0.38 -4.01 16 3 C 0.06 0.49 5.94 37.16 0.22 0.71 16 4 C -0.12 -1.06 5.95 -26.73 -0.16 -1.21 16 5 C 0.07 0.64 5.94 37.16 0.22 0.86 16 6 O -0.39 -4.77 10.34 -35.23 -0.36 -5.13 16 7 C 0.08 1.04 5.23 37.16 0.19 1.23 16 8 C -0.14 -1.90 4.38 -27.88 -0.12 -2.03 16 9 C 0.52 8.61 5.02 -10.98 -0.06 8.55 16 10 O -0.56 -10.64 15.38 5.56 0.09 -10.55 16 11 N -0.59 -10.15 1.66 -172.56 -0.29 -10.44 16 12 C 0.10 1.83 5.89 -3.49 -0.02 1.80 16 13 C 0.15 3.03 3.62 -66.84 -0.24 2.79 16 14 H 0.08 1.53 8.01 -51.93 -0.42 1.12 16 15 C -0.12 -2.35 5.58 -26.54 -0.15 -2.50 16 16 C -0.14 -2.64 5.55 -26.72 -0.15 -2.79 16 17 C -0.12 -2.34 5.55 -26.53 -0.15 -2.49 16 18 C 0.18 3.72 2.66 -67.12 -0.18 3.54 16 19 H 0.12 2.80 5.89 -51.93 -0.31 2.50 16 20 C 0.08 1.44 5.75 -3.76 -0.02 1.42 16 21 N -0.58 -13.19 2.53 -155.73 -0.39 -13.59 16 22 C -0.25 -6.39 9.71 -15.06 -0.15 -6.54 16 23 H 0.07 1.68 7.89 -52.48 -0.41 1.26 16 24 C 0.01 0.13 4.98 -17.43 -0.09 0.05 16 25 N -0.90 -23.97 10.98 55.49 0.61 -23.36 16 26 Si 0.90 20.65 29.59 -169.99 -5.03 15.62 16 27 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 31 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.04 0.21 8.14 -51.93 -0.42 -0.22 16 33 H 0.05 0.34 8.14 -51.92 -0.42 -0.08 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.76 8.10 -51.93 -0.42 0.34 16 40 H 0.06 0.71 8.10 -51.93 -0.42 0.29 16 41 H 0.10 1.37 7.67 -51.93 -0.40 0.97 16 42 H 0.10 1.20 7.94 -51.92 -0.41 0.79 16 43 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.08 1.46 6.99 -51.93 -0.36 1.09 16 45 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 46 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 47 H 0.08 1.40 2.49 -52.44 -0.13 1.27 16 48 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 50 H 0.07 1.77 7.97 -51.93 -0.41 1.36 16 51 H 0.07 1.09 5.90 -51.93 -0.31 0.78 16 52 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 53 H 0.25 6.70 8.31 -40.82 -0.34 6.37 16 LS Contribution 402.64 15.07 6.07 6.07 Total: -1.00 -29.23 402.64 -8.89 -38.12 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -9.48 Total: 2.57 kcal Atomic # 6 Polarization: 4.43 SS G_CDS: 0.27 Total: 4.70 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: -0.07 Total: -47.39 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -0.66 Total: -19.69 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.03 Total: 15.62 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -29.23 -8.89 -38.12 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001499559570.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.423 kcal (2) G-P(sol) polarization free energy of solvation -29.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds