Wall clock time and date at job start Sat Apr 11 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42898 * 114.00026 * 2 1 4 4 C 1.53001 * 109.46993 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.47067 * 304.99644 * 4 3 2 6 6 O 1.42907 * 109.47245 * 64.99923 * 4 3 2 7 7 C 1.42901 * 113.99720 * 270.00183 * 6 4 3 8 8 C 1.50699 * 109.47084 * 184.99535 * 4 3 2 9 9 O 1.21279 * 120.00264 * 245.00007 * 8 4 3 10 10 N 1.34776 * 120.00022 * 65.00142 * 8 4 3 11 11 C 1.47557 * 118.63424 * 354.20859 * 10 8 4 12 12 C 1.54308 * 111.98121 * 137.75512 * 11 10 8 13 13 C 1.50875 * 110.30523 * 319.64966 * 12 11 10 14 14 C 1.52623 * 109.37498 * 91.76043 * 13 12 11 15 15 C 1.47082 * 114.26274 * 275.25855 * 14 13 12 16 16 C 1.54255 * 112.34196 * 301.72138 * 15 14 13 17 17 C 1.54402 * 104.94686 * 237.62475 * 16 15 14 18 18 N 1.48158 * 104.61325 * 23.87711 * 17 16 15 19 19 C 1.36935 * 127.83216 * 140.43416 * 18 17 16 20 20 H 1.07999 * 120.00122 * 335.17620 * 19 18 17 21 21 C 1.38817 * 119.99450 * 155.17539 * 19 18 17 22 22 N 1.31611 * 120.00310 * 4.92865 * 21 19 18 23 23 Si 1.86801 * 119.99528 * 184.92518 * 21 19 18 24 24 H 1.48505 * 109.46951 * 90.00245 * 23 21 19 25 25 H 1.48496 * 109.47078 * 210.00346 * 23 21 19 26 26 H 1.48498 * 109.47170 * 330.00253 * 23 21 19 27 27 C 1.48159 * 104.33149 * 320.43039 * 18 17 16 28 28 C 1.44597 * 118.63794 * 174.48034 * 10 8 4 29 29 H 1.08995 * 109.46975 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46762 * 300.00182 * 1 2 3 31 31 H 1.08996 * 109.46887 * 60.00044 * 1 2 3 32 32 H 1.08994 * 109.47717 * 59.99749 * 3 2 1 33 33 H 1.09008 * 109.47103 * 299.99529 * 3 2 1 34 34 H 1.09001 * 109.46904 * 299.99784 * 7 6 4 35 35 H 1.08998 * 109.47201 * 59.99509 * 7 6 4 36 36 H 1.08994 * 109.46855 * 180.02562 * 7 6 4 37 37 H 1.09000 * 108.94925 * 258.56390 * 11 10 8 38 38 H 1.09003 * 108.94286 * 17.17923 * 11 10 8 39 39 H 1.08999 * 109.36015 * 199.34556 * 12 11 10 40 40 H 1.08999 * 109.20804 * 79.85517 * 12 11 10 41 41 H 1.08993 * 109.48862 * 331.78967 * 13 12 11 42 42 H 1.08997 * 109.50127 * 211.73438 * 13 12 11 43 43 H 1.08995 * 108.52428 * 154.02212 * 14 13 12 44 44 H 1.09002 * 108.40194 * 36.40672 * 14 13 12 45 45 H 1.09001 * 110.34655 * 356.48950 * 16 15 14 46 46 H 1.08999 * 110.34870 * 118.76134 * 16 15 14 47 47 H 1.08994 * 110.40862 * 142.65828 * 17 16 15 48 48 H 1.09001 * 110.40833 * 265.09823 * 17 16 15 49 49 H 0.97005 * 120.00106 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.40889 * 280.76778 * 27 18 17 51 51 H 1.08995 * 110.40536 * 158.33020 * 27 18 17 52 52 H 1.09001 * 109.46323 * 30.56950 * 28 10 8 53 53 H 1.08997 * 109.46526 * 150.54761 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 1 3.8515 0.5682 0.8410 6 8 3.9649 0.5795 -1.2220 7 6 4.0463 -0.8461 -1.1672 8 6 4.1481 2.5559 0.1231 9 8 4.8063 3.0105 -0.7885 10 7 3.9645 3.2771 1.2467 11 6 3.0543 2.7525 2.2829 12 6 3.6271 2.9397 3.7034 13 6 5.1079 2.6508 3.7131 14 6 5.8779 3.9455 3.4679 15 6 6.0410 4.2920 2.0479 16 6 6.7683 3.1871 1.2544 17 6 8.0042 3.8828 0.6441 18 7 8.2531 5.0455 1.5279 19 6 9.4596 5.5350 1.9521 20 1 10.3208 4.8848 1.9962 21 6 9.5756 6.8671 2.3253 22 7 8.5074 7.6349 2.3645 23 14 11.2479 7.5696 2.7718 24 1 11.8984 8.1125 1.5522 25 1 11.0777 8.6574 3.7682 26 1 12.0969 6.4972 3.3500 27 6 6.9007 5.5585 1.8488 28 6 4.6632 4.5356 1.3844 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6887 1.8464 -0.8901 34 1 4.7575 -1.1400 -0.3952 35 1 3.0646 -1.2573 -0.9322 36 1 4.3794 -1.2283 -2.1320 37 1 2.0992 3.2730 2.2114 38 1 2.8902 1.6897 2.1046 39 1 3.1218 2.2596 4.3892 40 1 3.4573 3.9669 4.0261 41 1 5.3435 1.9332 2.9273 42 1 5.3915 2.2368 4.6807 43 1 6.8665 3.8507 3.9170 44 1 5.3497 4.7594 3.9646 45 1 7.0773 2.3823 1.9215 46 1 6.1233 2.7999 0.4655 47 1 8.8614 3.2097 0.6511 48 1 7.7899 4.2163 -0.3713 49 1 8.5886 8.5658 2.6249 50 1 6.5140 6.1541 1.0219 51 1 6.9256 6.1488 2.7646 52 1 4.8076 4.9803 0.3998 53 1 4.0752 5.2114 2.0054 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001500161282.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:42 Heat of formation + Delta-G solvation = -93.615792 kcal Electronic energy + Delta-G solvation = -33065.429886 eV Core-core repulsion = 28938.408142 eV Total energy + Delta-G solvation = -4127.021744 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.27654 -40.11977 -38.91365 -37.98771 -37.51821 -35.14334 -34.30398 -32.92390 -31.70714 -29.99914 -28.71636 -27.98483 -27.48299 -26.58843 -26.02651 -25.12508 -23.91827 -22.37325 -21.89694 -20.46277 -19.48292 -18.90995 -18.68709 -17.84603 -17.74600 -17.04656 -16.87566 -16.65700 -16.43021 -16.23525 -15.97211 -15.71649 -15.22340 -15.13032 -14.90465 -14.67676 -14.48921 -14.34185 -14.11303 -13.94180 -13.60598 -13.34570 -13.19481 -12.97257 -12.86855 -12.78484 -12.59903 -12.41035 -12.38854 -12.17923 -12.08222 -12.01195 -11.86522 -11.82794 -11.49266 -11.22847 -11.18715 -11.15425 -10.90800 -10.71881 -10.65757 -10.44498 -9.55141 -8.77007 -7.94178 -5.33991 1.40771 1.42495 1.45915 1.53977 1.71115 2.46109 2.68097 2.87082 3.25448 3.54772 3.66031 3.67140 3.77050 3.90729 3.93444 4.01869 4.08439 4.13595 4.25102 4.32893 4.42577 4.45516 4.47123 4.51665 4.56017 4.58688 4.63364 4.68629 4.71026 4.73256 4.77125 4.90364 4.91112 4.96875 5.00582 5.04849 5.11018 5.21519 5.24529 5.32177 5.38427 5.40368 5.48203 5.49738 5.64597 5.73244 5.78238 6.02424 6.10941 6.23554 6.34400 7.02454 7.11115 7.66532 8.52754 9.19772 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.020795 B = 0.003153 C = 0.002942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.122154 B = 8879.219224 C = 9515.011948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.399 6.399 3 C 0.041 3.959 4 C 0.079 3.921 5 H 0.113 0.887 6 O -0.389 6.389 7 C 0.027 3.973 8 C 0.509 3.491 9 O -0.554 6.554 10 N -0.589 5.589 11 C 0.089 3.911 12 C -0.125 4.125 13 C -0.108 4.108 14 C -0.088 4.088 15 C -0.077 4.077 16 C -0.128 4.128 17 C 0.124 3.876 18 N -0.618 5.618 19 C -0.248 4.248 20 H 0.070 0.930 21 C -0.052 4.052 22 N -0.939 5.939 23 Si 0.977 3.023 24 H -0.287 1.287 25 H -0.288 1.288 26 H -0.269 1.269 27 C 0.182 3.818 28 C 0.137 3.863 29 H 0.101 0.899 30 H 0.060 0.940 31 H 0.042 0.958 32 H 0.100 0.900 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.068 0.932 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.103 0.897 39 H 0.109 0.891 40 H 0.071 0.929 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.029 0.971 44 H 0.060 0.940 45 H 0.055 0.945 46 H 0.090 0.910 47 H 0.039 0.961 48 H 0.000 1.000 49 H 0.251 0.749 50 H -0.012 1.012 51 H 0.054 0.946 52 H 0.053 0.947 53 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.654 -17.810 2.931 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.318 6.318 3 C -0.036 4.036 4 C 0.018 3.982 5 H 0.131 0.869 6 O -0.307 6.307 7 C -0.069 4.069 8 C 0.297 3.703 9 O -0.433 6.433 10 N -0.322 5.322 11 C -0.031 4.031 12 C -0.163 4.163 13 C -0.146 4.146 14 C -0.126 4.126 15 C -0.080 4.080 16 C -0.166 4.166 17 C -0.001 4.001 18 N -0.342 5.342 19 C -0.377 4.377 20 H 0.088 0.912 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.804 3.196 24 H -0.214 1.214 25 H -0.214 1.214 26 H -0.193 1.193 27 C 0.055 3.945 28 C 0.013 3.987 29 H 0.119 0.881 30 H 0.079 0.921 31 H 0.060 0.940 32 H 0.118 0.882 33 H 0.069 0.931 34 H 0.067 0.933 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.128 0.872 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.048 0.952 44 H 0.079 0.921 45 H 0.073 0.927 46 H 0.107 0.893 47 H 0.057 0.943 48 H 0.018 0.982 49 H 0.060 0.940 50 H 0.006 0.994 51 H 0.072 0.928 52 H 0.072 0.928 53 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -21.057 -17.427 2.396 27.438 hybrid contribution 1.269 1.086 -0.130 1.676 sum -19.788 -16.341 2.266 25.762 Atomic orbital electron populations 1.22982 0.78973 1.04143 1.01069 1.87819 1.21793 1.26599 1.95635 1.23242 0.90911 0.86412 1.03015 1.21967 0.93880 0.92089 0.90287 0.86912 1.87988 1.88230 1.22033 1.32471 1.23079 1.01867 0.78717 1.03238 1.20618 0.80396 0.86971 0.82346 1.90729 1.40995 1.71243 1.40325 1.47763 1.45647 1.20790 1.17980 1.22762 0.92274 1.00824 0.87248 1.21843 0.94917 1.03924 0.95620 1.21037 0.95697 0.96050 1.01804 1.20261 0.99697 0.98685 0.93935 1.21064 0.94533 0.96306 0.96106 1.22963 0.96969 0.97044 0.99625 1.21720 0.96455 0.89700 0.92259 1.45153 1.02086 1.33319 1.53638 1.19261 0.87466 0.92652 1.38305 0.91240 1.25910 1.00906 0.95966 1.01941 1.70070 1.28731 1.06325 1.53378 0.85122 0.79313 0.77927 0.77210 1.21381 1.21365 1.19324 1.21360 0.83522 0.92233 0.97337 1.21442 0.91788 0.85045 1.00426 0.88075 0.92105 0.93975 0.88237 0.93075 0.93337 0.91337 0.88903 0.88477 0.87894 0.87240 0.91050 0.92526 0.90760 0.95237 0.92109 0.92675 0.89261 0.94283 0.98248 0.93951 0.99362 0.92760 0.92842 0.88662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.40 -5.99 8.83 -144.34 -1.27 -7.26 16 3 C 0.04 0.68 5.09 71.98 0.37 1.04 16 4 C 0.08 1.77 2.08 29.85 0.06 1.83 16 5 H 0.11 2.02 7.05 -2.39 -0.02 2.00 16 6 O -0.39 -10.73 9.88 -125.59 -1.24 -11.98 16 7 C 0.03 0.51 10.71 113.37 1.21 1.73 16 8 C 0.51 14.97 5.40 87.66 0.47 15.45 16 9 O -0.55 -22.60 13.95 15.96 0.22 -22.38 16 10 N -0.59 -14.54 2.03 -817.57 -1.66 -16.20 16 11 C 0.09 1.23 4.56 86.62 0.39 1.63 16 12 C -0.13 -1.75 5.71 30.35 0.17 -1.58 16 13 C -0.11 -2.36 5.35 29.78 0.16 -2.20 16 14 C -0.09 -2.85 3.86 28.63 0.11 -2.74 16 15 C -0.08 -2.96 0.67 -52.50 -0.04 -3.00 16 16 C -0.13 -5.20 5.19 31.50 0.16 -5.03 16 17 C 0.12 6.20 7.24 86.54 0.63 6.83 16 18 N -0.62 -34.86 3.37 -688.14 -2.32 -37.18 16 19 C -0.25 -14.85 10.32 84.04 0.87 -13.98 16 20 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 21 C -0.05 -3.10 5.49 84.86 0.47 -2.63 16 22 N -0.94 -57.73 10.92 21.65 0.24 -57.50 16 23 Si 0.98 47.06 29.56 68.60 2.03 49.09 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 26 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 27 C 0.18 9.35 4.95 86.52 0.43 9.78 16 28 C 0.14 4.42 4.37 87.37 0.38 4.80 16 29 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.10 1.06 4.84 -2.39 -0.01 1.05 16 33 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 34 H 0.05 0.83 8.09 -2.39 -0.02 0.81 16 35 H 0.07 1.15 6.40 -2.39 -0.02 1.13 16 36 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 0.87 7.72 -2.39 -0.02 0.85 16 38 H 0.10 1.03 4.71 -2.39 -0.01 1.02 16 39 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 1.06 7.32 -2.39 -0.02 1.04 16 41 H 0.06 1.33 6.07 -2.39 -0.01 1.31 16 42 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 43 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.06 1.87 7.37 -2.39 -0.02 1.86 16 45 H 0.05 2.11 6.96 -2.39 -0.02 2.09 16 46 H 0.09 3.60 2.98 -2.39 -0.01 3.59 16 47 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 50 H -0.01 -0.65 7.48 -2.39 -0.02 -0.67 16 51 H 0.05 3.06 6.46 -2.39 -0.02 3.04 16 52 H 0.05 2.11 6.82 -2.39 -0.02 2.10 16 53 H 0.10 2.63 8.08 -2.39 -0.02 2.61 16 Total: -1.00 -80.57 387.74 3.99 -76.58 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 0.90 Total: 13.45 kcal Atomic # 6 Polarization: 6.28 SS G_CDS: 7.10 Total: 13.38 kcal Atomic # 7 Polarization: -107.13 SS G_CDS: -3.74 Total: -110.88 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.29 Total: -41.62 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -80.57 3.99 -76.58 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001500161282.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.038 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds