Wall clock time and date at job start Sat Apr 11 2020 06:12:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.46786 * 2 1 4 4 C 1.42901 * 113.99855 * 175.02249 * 3 2 1 5 5 H 1.09003 * 109.47218 * 34.81048 * 4 3 2 6 6 C 1.50703 * 109.47045 * 154.81117 * 4 3 2 7 7 O 1.21278 * 120.00254 * 32.80015 * 6 4 3 8 8 N 1.34774 * 119.99804 * 212.79925 * 6 4 3 9 9 C 1.46929 * 120.63501 * 5.46315 * 8 6 4 10 10 C 1.53625 * 108.54718 * 126.36782 * 9 8 6 11 11 C 1.53040 * 109.23940 * 54.85699 * 10 9 8 12 12 C 1.53001 * 109.44310 * 178.49612 * 11 10 9 13 13 N 1.46493 * 109.46078 * 58.53597 * 11 10 9 14 14 C 1.36941 * 120.00532 * 59.92576 * 13 11 10 15 15 H 1.08000 * 119.99308 * 0.02562 * 14 13 11 16 16 C 1.38811 * 120.00347 * 180.02562 * 14 13 11 17 17 N 1.31622 * 119.99785 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99916 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47151 * 60.00097 * 18 16 14 20 20 H 1.48508 * 109.46864 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47097 * 299.99723 * 18 16 14 22 22 C 1.53040 * 109.53868 * 298.50782 * 11 10 9 23 23 C 1.46929 * 120.62999 * 185.74087 * 8 6 4 24 24 C 1.52999 * 109.47451 * 274.80850 * 4 3 2 25 25 H 1.09000 * 110.45334 * 53.43346 * 24 4 3 26 26 C 1.54503 * 110.51324 * 176.03821 * 24 4 3 27 27 C 1.54475 * 104.06482 * 118.64584 * 26 24 4 28 28 O 1.44424 * 104.80066 * 23.98098 * 27 26 24 29 29 C 1.44643 * 105.36796 * 319.56329 * 28 27 26 30 30 H 1.09008 * 109.47050 * 299.99505 * 1 2 3 31 31 H 1.08997 * 109.47412 * 60.00022 * 1 2 3 32 32 H 1.09004 * 109.47115 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47406 * 240.00856 * 2 1 3 34 34 H 1.08997 * 109.47412 * 119.99978 * 2 1 3 35 35 H 1.08998 * 109.58460 * 246.20396 * 9 8 6 36 36 H 1.09002 * 109.58459 * 6.61983 * 9 8 6 37 37 H 1.08998 * 109.62810 * 294.86494 * 10 9 8 38 38 H 1.08995 * 109.45793 * 174.74214 * 10 9 8 39 39 H 1.09001 * 109.46578 * 180.02562 * 12 11 10 40 40 H 1.08991 * 109.47366 * 300.06044 * 12 11 10 41 41 H 1.09006 * 109.47017 * 60.06691 * 12 11 10 42 42 H 0.97004 * 119.99896 * 239.92642 * 13 11 10 43 43 H 0.97003 * 119.99650 * 180.02562 * 17 16 14 44 44 H 1.08991 * 109.49911 * 301.41795 * 22 11 10 45 45 H 1.08994 * 109.52373 * 181.33120 * 22 11 10 46 46 H 1.08996 * 109.58791 * 353.37434 * 23 8 6 47 47 H 1.08998 * 109.58468 * 113.65673 * 23 8 6 48 48 H 1.09006 * 110.51468 * 237.29327 * 26 24 4 49 49 H 1.08999 * 110.51510 * 359.86602 * 26 24 4 50 50 H 1.09004 * 110.37331 * 142.80908 * 27 26 24 51 51 H 1.08996 * 110.37746 * 265.14834 * 27 26 24 52 52 H 1.09001 * 110.34064 * 281.59045 * 29 28 27 53 53 H 1.09003 * 110.50933 * 159.18960 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4261 1.4618 0.1133 5 1 3.9006 0.6333 -0.4126 6 6 3.8750 2.7657 -0.4947 7 8 3.1573 3.7415 -0.4352 8 7 5.0741 2.8473 -1.1046 9 6 5.9027 1.6483 -1.2905 10 6 6.2690 1.5332 -2.7780 11 6 6.9340 2.8334 -3.2356 12 6 7.3347 2.7099 -4.7071 13 7 8.1277 3.0830 -2.4241 14 6 9.1508 2.1727 -2.4128 15 1 9.0776 1.2710 -3.0026 16 6 10.2817 2.4091 -1.6433 17 7 10.3705 3.5078 -0.9242 18 14 11.6774 1.1677 -1.6286 19 1 12.2083 1.0035 -3.0056 20 1 12.7602 1.6509 -0.7344 21 1 11.1731 -0.1383 -1.1334 22 6 5.9526 3.9959 -3.0702 23 6 5.5802 4.1381 -1.5910 24 6 3.8247 1.4238 1.5899 25 1 3.4078 0.5409 2.0744 26 6 5.3627 1.4462 1.7363 27 6 5.6456 2.7429 2.5267 28 8 4.4204 3.0140 3.2417 29 6 3.3572 2.7080 2.3101 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5137 -0.8901 34 1 1.8933 -0.5138 0.8899 35 1 6.8104 1.7354 -0.6934 36 1 5.3428 0.7657 -0.9812 37 1 5.3670 1.3596 -3.3648 38 1 6.9600 0.7021 -2.9185 39 1 7.8088 3.6356 -5.0333 40 1 8.0336 1.8820 -4.8251 41 1 6.4465 2.5247 -5.3112 42 1 8.1935 3.8931 -1.8946 43 1 11.1610 3.6731 -0.3868 44 1 5.0537 3.7992 -3.6544 45 1 6.4181 4.9179 -3.4183 46 1 4.8075 4.8988 -1.4802 47 1 6.4608 4.4252 -1.0163 48 1 5.7059 0.5756 2.2953 49 1 5.8391 1.4820 0.7566 50 1 6.4672 2.5892 3.2264 51 1 5.8756 3.5610 1.8441 52 1 3.2346 3.5211 1.5946 53 1 2.4236 2.5260 2.8424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502790064.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:25 Heat of formation + Delta-G solvation = -118.992163 kcal Electronic energy + Delta-G solvation = -33241.289873 eV Core-core repulsion = 29113.167727 eV Total energy + Delta-G solvation = -4128.122146 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.13172 -40.23224 -39.22989 -38.53843 -36.14473 -34.51405 -33.89588 -32.09801 -32.01030 -30.83225 -30.32830 -29.26673 -27.37396 -25.79577 -24.63581 -24.26783 -23.91820 -23.35457 -22.15329 -20.63213 -19.52106 -18.96533 -18.48917 -18.18931 -17.61381 -17.10714 -16.74429 -16.45281 -16.24060 -15.93014 -15.81723 -15.60379 -15.44938 -15.15989 -14.93450 -14.64428 -14.45089 -14.09081 -13.92468 -13.77932 -13.44075 -13.36432 -13.18142 -13.08772 -12.79711 -12.75832 -12.63540 -12.56558 -12.48257 -12.32340 -12.18950 -12.16204 -12.08959 -11.99985 -11.82941 -11.66303 -11.44540 -11.10390 -10.96191 -10.83218 -10.62887 -10.38981 -9.62658 -8.85965 -7.81443 -5.07190 1.42882 1.52773 1.54489 1.59350 1.73787 2.64300 2.72861 2.93570 3.32605 3.40810 3.52831 3.68756 3.72456 3.82076 3.86720 3.99258 4.01204 4.12496 4.17788 4.21481 4.26983 4.30733 4.35849 4.38921 4.46223 4.53005 4.63309 4.66749 4.69878 4.75512 4.78440 4.84329 4.87583 4.89064 4.97458 5.00994 5.02212 5.05707 5.07487 5.10263 5.17450 5.29307 5.33177 5.37204 5.57807 5.65750 5.70963 5.72262 6.07152 6.39516 6.41443 7.08057 7.47702 8.23296 8.47195 9.41674 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012205 B = 0.004018 C = 0.003590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2293.617603 B = 6967.698727 C = 7797.586485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.042 3.958 3 O -0.381 6.381 4 C 0.086 3.914 5 H 0.111 0.889 6 C 0.516 3.484 7 O -0.566 6.566 8 N -0.591 5.591 9 C 0.112 3.888 10 C -0.130 4.130 11 C 0.189 3.811 12 C -0.144 4.144 13 N -0.723 5.723 14 C -0.210 4.210 15 H 0.078 0.922 16 C -0.071 4.071 17 N -0.968 5.968 18 Si 0.953 3.047 19 H -0.287 1.287 20 H -0.308 1.308 21 H -0.276 1.276 22 C -0.119 4.119 23 C 0.120 3.880 24 C -0.127 4.127 25 H 0.122 0.878 26 C -0.165 4.165 27 C 0.044 3.956 28 O -0.395 6.395 29 C 0.039 3.961 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.038 0.962 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.371 0.629 43 H 0.244 0.756 44 H 0.080 0.920 45 H 0.073 0.927 46 H 0.078 0.922 47 H 0.056 0.944 48 H 0.104 0.896 49 H 0.092 0.908 50 H 0.102 0.898 51 H 0.036 0.964 52 H 0.057 0.943 53 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.396 -10.172 0.624 19.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 O -0.300 6.300 4 C 0.025 3.975 5 H 0.128 0.872 6 C 0.304 3.696 7 O -0.445 6.445 8 N -0.324 5.324 9 C -0.009 4.009 10 C -0.170 4.170 11 C 0.099 3.901 12 C -0.204 4.204 13 N -0.363 5.363 14 C -0.342 4.342 15 H 0.096 0.904 16 C -0.263 4.263 17 N -0.620 5.620 18 Si 0.785 3.215 19 H -0.213 1.213 20 H -0.235 1.235 21 H -0.202 1.202 22 C -0.157 4.157 23 C -0.002 4.002 24 C -0.146 4.146 25 H 0.140 0.860 26 C -0.202 4.202 27 C -0.033 4.033 28 O -0.315 6.315 29 C -0.038 4.038 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.119 0.881 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.057 0.943 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.204 0.796 43 H 0.053 0.947 44 H 0.099 0.901 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.074 0.926 48 H 0.122 0.878 49 H 0.110 0.890 50 H 0.120 0.880 51 H 0.055 0.945 52 H 0.075 0.925 53 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -16.827 -9.581 0.809 19.380 hybrid contribution 1.623 -0.001 0.098 1.626 sum -15.203 -9.582 0.907 17.994 Atomic orbital electron populations 1.21757 0.92731 1.03528 1.02565 1.22904 0.96524 0.82152 1.01751 1.88034 1.18623 1.28870 1.94524 1.22025 0.84092 0.95826 0.95564 0.87198 1.20624 0.80838 0.90464 0.77636 1.90629 1.54346 1.39973 1.59594 1.48097 1.17723 1.09932 1.56651 1.22031 0.94694 0.86172 0.98050 1.22336 1.00337 0.99435 0.94937 1.19816 0.86270 0.93110 0.90869 1.22139 1.00602 1.00898 0.96718 1.42667 1.16147 1.23791 1.53730 1.19364 0.95023 0.99997 1.19832 0.90389 1.25276 1.00684 0.99088 1.01242 1.69791 1.29622 1.27828 1.34751 0.85508 0.79934 0.79377 0.76709 1.21339 1.23482 1.20222 1.21993 0.99285 0.99283 0.95160 1.21432 0.98402 0.85161 0.95221 1.22925 0.96461 1.00832 0.94352 0.85986 1.23344 0.94419 0.99266 1.03155 1.23386 0.88040 0.96203 0.95649 1.89089 1.15961 1.88933 1.37480 1.23727 0.91469 0.96200 0.92372 0.92350 0.92763 0.88584 0.91849 0.91294 0.91141 0.88096 0.90725 0.90878 0.94297 0.93744 0.91612 0.79592 0.94663 0.90107 0.90871 0.90359 0.92602 0.87792 0.89012 0.88027 0.94535 0.92493 0.88045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 10.28 71.98 0.74 -1.27 16 2 C 0.04 0.66 6.45 71.98 0.46 1.12 16 3 O -0.38 -9.28 9.63 -132.39 -1.28 -10.55 16 4 C 0.09 2.03 1.97 29.85 0.06 2.09 16 5 H 0.11 2.02 5.37 -2.39 -0.01 2.01 16 6 C 0.52 15.99 5.58 87.66 0.49 16.47 16 7 O -0.57 -21.72 14.31 13.57 0.19 -21.52 16 8 N -0.59 -17.66 2.79 -818.05 -2.29 -19.94 16 9 C 0.11 3.08 4.10 86.51 0.35 3.43 16 10 C -0.13 -3.68 4.72 30.82 0.15 -3.53 16 11 C 0.19 6.23 0.74 3.63 0.00 6.23 16 12 C -0.14 -4.52 8.44 71.98 0.61 -3.92 16 13 N -0.72 -30.93 4.13 -303.23 -1.25 -32.18 16 14 C -0.21 -10.05 8.68 84.03 0.73 -9.32 16 15 H 0.08 3.56 6.70 -2.91 -0.02 3.54 16 16 C -0.07 -3.70 5.50 84.86 0.47 -3.24 16 17 N -0.97 -55.30 13.06 21.65 0.28 -55.01 16 18 Si 0.95 43.06 29.55 68.60 2.03 45.09 16 19 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 20 H -0.31 -14.58 7.11 99.48 0.71 -13.88 16 21 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 22 C -0.12 -3.57 4.96 30.67 0.15 -3.42 16 23 C 0.12 3.93 6.16 86.36 0.53 4.46 16 24 C -0.13 -2.84 3.09 -9.78 -0.03 -2.87 16 25 H 0.12 2.08 7.41 -2.39 -0.02 2.06 16 26 C -0.16 -3.90 6.35 31.61 0.20 -3.70 16 27 C 0.04 1.29 7.64 72.48 0.55 1.84 16 28 O -0.40 -12.55 11.65 -148.98 -1.74 -14.29 16 29 C 0.04 1.10 6.91 72.48 0.50 1.60 16 30 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 31 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 34 H 0.07 0.82 7.38 -2.39 -0.02 0.80 16 35 H 0.07 2.39 6.79 -2.39 -0.02 2.37 16 36 H 0.10 2.10 4.89 -2.39 -0.01 2.09 16 37 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 38 H 0.07 2.15 7.31 -2.39 -0.02 2.13 16 39 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.04 1.48 7.27 -2.39 -0.02 1.47 16 41 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 42 H 0.37 17.86 6.47 -92.71 -0.60 17.26 16 43 H 0.24 13.97 8.31 -92.71 -0.77 13.20 16 44 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 45 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 46 H 0.08 2.64 7.00 -2.39 -0.02 2.62 16 47 H 0.06 2.07 6.95 -2.39 -0.02 2.06 16 48 H 0.10 1.99 8.14 -2.38 -0.02 1.97 16 49 H 0.09 2.32 3.10 -2.39 -0.01 2.31 16 50 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 51 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.06 1.98 5.09 -2.39 -0.01 1.97 16 53 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -65.03 393.89 2.24 -62.79 By element: Atomic # 1 Polarization: 39.32 SS G_CDS: 0.31 Total: 39.63 kcal Atomic # 6 Polarization: 0.02 SS G_CDS: 5.97 Total: 5.99 kcal Atomic # 7 Polarization: -103.89 SS G_CDS: -3.25 Total: -107.14 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -2.82 Total: -46.36 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -65.03 2.24 -62.79 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502790064.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.202 kcal (2) G-P(sol) polarization free energy of solvation -65.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.992 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds