Wall clock time and date at job start Sat Apr 11 2020 06:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42900 * 114.00034 * 2 1 4 4 C 1.53001 * 109.46754 * 180.02562 * 3 2 1 5 5 O 1.42902 * 109.47245 * 65.00179 * 4 3 2 6 6 C 1.42899 * 113.99940 * 179.97438 * 5 4 3 7 7 C 1.52998 * 109.47126 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47124 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99695 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00050 * 180.02562 * 10 8 7 12 12 H 1.09003 * 109.03093 * 36.03003 * 11 10 8 13 13 C 1.52536 * 109.04246 * 277.13985 * 11 10 8 14 14 C 1.53817 * 111.70642 * 293.49166 * 13 11 10 15 15 C 1.51627 * 107.03038 * 302.45707 * 14 13 11 16 16 H 1.08994 * 110.51012 * 304.78109 * 15 14 13 17 17 C 1.53065 * 116.66129 * 176.22310 * 15 14 13 18 18 N 1.49210 * 103.40547 * 204.18160 * 17 15 14 19 19 C 1.36941 * 125.81796 * 204.41916 * 18 17 15 20 20 H 1.08001 * 119.99720 * 179.90479 * 19 18 17 21 21 C 1.38809 * 120.00082 * 359.91009 * 19 18 17 22 22 N 1.31626 * 119.99858 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00046 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47019 * 60.00155 * 23 21 19 25 25 H 1.48506 * 109.46896 * 179.97438 * 23 21 19 26 26 H 1.48502 * 109.47226 * 299.99640 * 23 21 19 27 27 C 1.48243 * 108.40138 * 24.34269 * 18 17 15 28 28 C 1.52325 * 105.85870 * 3.22774 * 27 18 17 29 29 H 1.08994 * 110.22584 * 87.81004 * 28 27 18 30 30 C 1.51445 * 117.46318 * 214.65282 * 28 27 18 31 31 H 1.08994 * 109.47422 * 59.99756 * 1 2 3 32 32 H 1.09000 * 109.47081 * 180.02562 * 1 2 3 33 33 H 1.09002 * 109.46697 * 299.99569 * 1 2 3 34 34 H 1.08993 * 109.47215 * 60.00357 * 3 2 1 35 35 H 1.09003 * 109.47037 * 300.00056 * 3 2 1 36 36 H 1.08998 * 109.47141 * 304.99757 * 4 3 2 37 37 H 1.09005 * 109.46846 * 184.99834 * 4 3 2 38 38 H 1.09009 * 109.46964 * 59.99799 * 6 5 4 39 39 H 1.09001 * 109.47471 * 300.00275 * 6 5 4 40 40 H 1.08996 * 109.46851 * 60.00033 * 7 6 5 41 41 H 1.08995 * 109.47253 * 299.99983 * 7 6 5 42 42 H 0.97001 * 120.00298 * 359.97438 * 10 8 7 43 43 H 1.08993 * 109.03053 * 54.06235 * 13 11 10 44 44 H 1.08997 * 109.02809 * 172.91937 * 13 11 10 45 45 H 1.08995 * 109.94363 * 61.83935 * 14 13 11 46 46 H 1.09001 * 109.93554 * 182.99361 * 14 13 11 47 47 H 1.08997 * 110.62973 * 322.62722 * 17 15 14 48 48 H 1.09004 * 110.62369 * 85.65127 * 17 15 14 49 49 H 0.96993 * 119.99674 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.17477 * 244.13336 * 27 18 17 51 51 H 1.08999 * 110.17537 * 122.32491 * 27 18 17 52 52 H 1.09002 * 109.94247 * 59.42641 * 30 28 27 53 53 H 1.09004 * 109.94206 * 298.27524 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1845 -0.0006 5 8 3.9649 0.5795 -1.2220 6 6 5.3812 0.4200 -1.3251 7 6 5.7245 -0.2343 -2.6648 8 6 7.2182 -0.4031 -2.7732 9 8 7.9372 -0.0358 -1.8682 10 7 7.7549 -0.9613 -3.8763 11 6 9.2068 -1.1260 -3.9815 12 1 9.6091 -1.3692 -2.9980 13 6 9.8230 0.1849 -4.4595 14 6 9.4006 0.5202 -5.9000 15 6 9.8251 -0.6467 -6.7702 16 1 10.8910 -0.8424 -6.6532 17 6 9.4286 -0.5819 -8.2472 18 7 9.4159 -2.0143 -8.6651 19 6 9.5846 -2.4779 -9.9425 20 1 9.5596 -3.5396 -10.1393 21 6 9.7878 -1.5835 -10.9844 22 7 9.8188 -0.2896 -10.7443 23 14 10.0186 -2.2160 -12.7268 24 1 8.8140 -2.9800 -13.1397 25 1 10.2159 -1.0680 -13.6480 26 1 11.2088 -3.1026 -12.7780 27 6 9.1914 -2.8508 -7.4620 28 6 8.9863 -1.8759 -6.3096 29 1 7.9349 -1.5991 -6.2327 30 6 9.5122 -2.2826 -4.9488 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.6887 1.8463 0.8900 35 1 1.6886 1.8464 -0.8900 36 1 3.8515 0.5681 0.8409 37 1 3.9786 2.1764 0.0889 38 1 5.7358 -0.2121 -0.5109 39 1 5.8623 1.3961 -1.2631 40 1 5.3699 0.3975 -3.4791 41 1 5.2436 -1.2104 -2.7263 42 1 7.1798 -1.2548 -4.6002 43 1 9.5024 0.9901 -3.7985 44 1 10.9091 0.1033 -4.4173 45 1 8.3193 0.6474 -5.9503 46 1 9.8978 1.4322 -6.2304 47 1 8.4384 -0.1406 -8.3600 48 1 10.1678 -0.0207 -8.8189 49 1 9.9604 0.3354 -11.4724 50 1 10.0622 -3.4786 -7.2727 51 1 8.3033 -3.4687 -7.5941 52 1 10.5881 -2.4496 -5.0007 53 1 9.0111 -3.1904 -4.6127 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506859604.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:52 Heat of formation + Delta-G solvation = -132.705035 kcal Electronic energy + Delta-G solvation = -30037.547079 eV Core-core repulsion = 25908.830298 eV Total energy + Delta-G solvation = -4128.716781 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.53744 -40.12695 -39.33048 -38.14444 -37.07208 -34.72903 -33.61667 -33.00225 -31.92514 -30.83077 -30.18059 -27.81215 -27.13974 -26.85914 -24.83365 -23.51803 -23.50395 -21.95076 -21.67392 -21.45695 -20.11458 -18.75587 -18.54292 -17.82750 -17.40762 -17.14367 -16.96056 -16.73976 -16.29979 -16.13243 -16.07133 -15.67124 -15.50128 -15.31200 -14.81434 -14.68979 -14.45343 -14.16823 -14.03933 -13.81072 -13.43647 -13.38929 -13.17109 -12.99384 -12.78536 -12.64985 -12.62188 -12.53935 -12.44757 -12.31094 -12.14112 -11.97160 -11.95508 -11.92144 -11.68434 -11.38882 -10.99070 -10.87976 -10.76593 -10.67015 -10.64481 -10.58779 -9.97430 -8.85008 -7.74530 -5.17406 1.46707 1.49686 1.55954 1.65284 2.04497 2.51035 2.84933 2.89523 3.35200 3.58350 3.63721 3.73563 3.80894 3.87964 4.02943 4.06371 4.16196 4.18418 4.25660 4.37874 4.45667 4.47557 4.49122 4.50876 4.55107 4.58703 4.62315 4.63577 4.73236 4.74180 4.78538 4.85452 4.86998 4.88427 4.89382 4.98294 5.02009 5.10712 5.14947 5.21470 5.29755 5.41778 5.49016 5.58751 5.61134 5.76959 5.86947 6.14076 6.28284 6.31457 6.57151 7.11293 7.25321 7.79093 8.46172 9.27711 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.015535 B = 0.001914 C = 0.001794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.905172 B =14627.594285 C =15607.201425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.416 6.416 3 C 0.060 3.940 4 C 0.057 3.943 5 O -0.401 6.401 6 C 0.082 3.918 7 C -0.136 4.136 8 C 0.521 3.479 9 O -0.581 6.581 10 N -0.713 5.713 11 C 0.156 3.844 12 H 0.085 0.915 13 C -0.118 4.118 14 C -0.091 4.091 15 C -0.103 4.103 16 H 0.064 0.936 17 C 0.168 3.832 18 N -0.633 5.633 19 C -0.236 4.236 20 H 0.079 0.921 21 C -0.070 4.070 22 N -0.949 5.949 23 Si 0.978 3.022 24 H -0.279 1.279 25 H -0.295 1.295 26 H -0.278 1.278 27 C 0.137 3.863 28 C -0.090 4.090 29 H 0.074 0.926 30 C -0.098 4.098 31 H 0.046 0.954 32 H 0.091 0.909 33 H 0.055 0.945 34 H 0.089 0.911 35 H 0.059 0.941 36 H 0.057 0.943 37 H 0.084 0.916 38 H 0.050 0.950 39 H 0.054 0.946 40 H 0.114 0.886 41 H 0.116 0.884 42 H 0.410 0.590 43 H 0.059 0.941 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.057 0.943 47 H -0.011 1.011 48 H 0.064 0.936 49 H 0.245 0.755 50 H 0.027 0.973 51 H 0.027 0.973 52 H 0.084 0.916 53 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.100 2.434 23.687 27.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.017 4.017 4 C -0.019 4.019 5 O -0.321 6.321 6 C 0.005 3.995 7 C -0.175 4.175 8 C 0.309 3.691 9 O -0.462 6.462 10 N -0.366 5.366 11 C 0.052 3.948 12 H 0.103 0.897 13 C -0.157 4.157 14 C -0.129 4.129 15 C -0.122 4.122 16 H 0.082 0.918 17 C 0.044 3.956 18 N -0.359 5.359 19 C -0.365 4.365 20 H 0.097 0.903 21 C -0.263 4.263 22 N -0.599 5.599 23 Si 0.806 3.194 24 H -0.205 1.205 25 H -0.221 1.221 26 H -0.204 1.204 27 C 0.013 3.987 28 C -0.109 4.109 29 H 0.092 0.908 30 C -0.136 4.136 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.074 0.926 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.069 0.931 39 H 0.072 0.928 40 H 0.132 0.868 41 H 0.134 0.866 42 H 0.247 0.753 43 H 0.078 0.922 44 H 0.094 0.906 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.007 0.993 48 H 0.082 0.918 49 H 0.055 0.945 50 H 0.045 0.955 51 H 0.046 0.954 52 H 0.103 0.897 53 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.573 2.511 23.974 27.188 hybrid contribution -0.113 0.075 -1.573 1.579 sum -12.687 2.586 22.401 25.874 Atomic orbital electron populations 1.22903 0.79618 1.03648 1.00874 1.87916 1.21363 1.28700 1.95617 1.22716 0.91769 0.85029 1.02137 1.22728 0.93979 0.98457 0.86762 1.87848 1.22202 1.82652 1.39353 1.22038 0.80806 0.99921 0.96698 1.21450 0.91298 1.05168 0.99616 1.20672 0.90769 0.76246 0.81441 1.90682 1.63938 1.51258 1.40311 1.46194 1.08441 1.62004 1.19954 1.20954 0.79980 0.94534 0.99336 0.89661 1.21839 1.01178 0.97265 0.95376 1.21186 1.00728 0.97004 0.94018 1.22179 0.98920 0.96224 0.94893 0.91758 1.21451 0.97305 0.85325 0.91552 1.45586 1.84823 1.02643 1.02885 1.19432 1.40691 0.92372 0.84020 0.90302 1.25603 1.03112 0.95725 1.01822 1.70078 1.57923 1.01200 1.30740 0.85159 0.78138 0.76599 0.79479 1.20529 1.22099 1.20380 1.21163 0.97534 0.93440 0.86558 1.21709 0.99524 0.95808 0.93874 0.90803 1.21537 1.02587 0.97409 0.92094 0.93503 0.89069 0.92623 0.89312 0.92246 0.92456 0.89816 0.93139 0.92803 0.86800 0.86601 0.75307 0.92192 0.90613 0.92113 0.92379 0.99323 0.91798 0.94530 0.95503 0.95449 0.89735 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.62 10.67 -144.34 -1.54 -9.16 16 3 C 0.06 0.80 6.32 71.98 0.45 1.25 16 4 C 0.06 0.86 6.32 71.98 0.45 1.31 16 5 O -0.40 -8.20 10.31 -144.34 -1.49 -9.69 16 6 C 0.08 1.60 5.23 71.98 0.38 1.97 16 7 C -0.14 -2.38 6.07 29.85 0.18 -2.20 16 8 C 0.52 11.57 7.69 87.66 0.67 12.24 16 9 O -0.58 -16.84 15.52 -3.04 -0.05 -16.89 16 10 N -0.71 -14.56 4.66 -441.91 -2.06 -16.62 16 11 C 0.16 3.47 2.68 45.12 0.12 3.59 16 12 H 0.09 1.96 7.59 -2.39 -0.02 1.94 16 13 C -0.12 -2.89 5.41 30.72 0.17 -2.72 16 14 C -0.09 -2.66 5.57 30.42 0.17 -2.49 16 15 C -0.10 -3.63 2.50 -10.26 -0.03 -3.66 16 16 H 0.06 2.36 8.01 -2.39 -0.02 2.34 16 17 C 0.17 8.16 5.54 85.88 0.48 8.64 16 18 N -0.63 -32.35 3.47 -691.59 -2.40 -34.75 16 19 C -0.24 -13.29 10.30 84.03 0.87 -12.43 16 20 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 21 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 22 N -0.95 -57.04 10.12 21.65 0.22 -56.82 16 23 Si 0.98 45.99 29.55 68.60 2.03 48.02 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 27 C 0.14 5.39 6.98 85.82 0.60 5.99 16 28 C -0.09 -2.73 2.25 -10.56 -0.02 -2.75 16 29 H 0.07 2.11 6.11 -2.39 -0.01 2.10 16 30 C -0.10 -2.22 5.36 30.37 0.16 -2.05 16 31 H 0.05 0.46 8.14 -2.39 -0.02 0.45 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.06 0.42 8.14 -2.39 -0.02 0.41 16 34 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.92 8.14 -2.38 -0.02 0.90 16 38 H 0.05 1.03 8.10 -2.38 -0.02 1.01 16 39 H 0.05 1.06 8.10 -2.39 -0.02 1.04 16 40 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.41 7.35 6.82 -92.71 -0.63 6.72 16 43 H 0.06 1.54 7.94 -2.39 -0.02 1.52 16 44 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 45 H 0.06 1.74 7.84 -2.39 -0.02 1.72 16 46 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 47 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 48 H 0.06 3.61 5.95 -2.39 -0.01 3.60 16 49 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 50 H 0.03 1.04 8.08 -2.38 -0.02 1.02 16 51 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 52 H 0.08 1.91 8.03 -2.39 -0.02 1.89 16 53 H 0.09 1.68 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -73.02 413.03 1.32 -71.69 By element: Atomic # 1 Polarization: 19.28 SS G_CDS: 0.24 Total: 19.52 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: 6.37 Total: 4.70 kcal Atomic # 7 Polarization: -103.95 SS G_CDS: -4.24 Total: -108.19 kcal Atomic # 8 Polarization: -32.67 SS G_CDS: -3.07 Total: -35.74 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.02 kcal Total: -73.02 1.32 -71.69 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506859604.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.011 kcal (2) G-P(sol) polarization free energy of solvation -73.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds