Wall clock time and date at job start Sat Apr 11 2020 06:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42901 * 113.99688 * 2 1 4 4 C 1.53009 * 109.46824 * 179.97438 * 3 2 1 5 5 O 1.42899 * 109.47113 * 64.99778 * 4 3 2 6 6 C 1.42903 * 113.99629 * 180.02562 * 5 4 3 7 7 C 1.53000 * 109.46726 * 180.02562 * 6 5 4 8 8 C 1.50706 * 109.46735 * 180.02562 * 7 6 5 9 9 O 1.21273 * 120.00140 * 359.97438 * 8 7 6 10 10 N 1.34779 * 119.99767 * 180.02562 * 8 7 6 11 11 C 1.46496 * 120.00054 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.70873 * 35.59664 * 11 10 8 13 13 C 1.53301 * 109.71660 * 274.99990 * 11 10 8 14 14 C 1.52618 * 108.50370 * 176.52622 * 13 11 10 15 15 C 1.52990 * 110.93535 * 62.20729 * 14 13 11 16 16 H 1.09000 * 112.42609 * 73.38178 * 15 14 13 17 17 C 1.55839 * 106.36799 * 198.10902 * 15 14 13 18 18 N 1.47624 * 104.47226 * 77.05885 * 17 15 14 19 19 C 1.36933 * 125.72656 * 204.86879 * 18 17 15 20 20 H 1.07997 * 119.99963 * 179.97438 * 19 18 17 21 21 C 1.38814 * 120.00065 * 359.97438 * 19 18 17 22 22 N 1.31616 * 119.99946 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00148 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47182 * 59.99693 * 23 21 19 25 25 H 1.48501 * 109.47085 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46729 * 300.00036 * 23 21 19 27 27 C 1.47426 * 108.54451 * 24.86621 * 18 17 15 28 28 C 1.53377 * 106.51928 * 359.32946 * 27 18 17 29 29 H 1.09000 * 108.94774 * 91.96960 * 28 27 18 30 30 C 1.50893 * 113.07473 * 212.47274 * 28 27 18 31 31 H 1.08998 * 109.47348 * 300.00790 * 1 2 3 32 32 H 1.09001 * 109.46471 * 60.00592 * 1 2 3 33 33 H 1.09000 * 109.47004 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.47317 * 59.99739 * 3 2 1 35 35 H 1.09002 * 109.47468 * 299.99096 * 3 2 1 36 36 H 1.09007 * 109.46516 * 304.99711 * 4 3 2 37 37 H 1.09004 * 109.47113 * 185.00179 * 4 3 2 38 38 H 1.09002 * 109.47382 * 59.99956 * 6 5 4 39 39 H 1.09001 * 109.46938 * 299.99942 * 6 5 4 40 40 H 1.09001 * 109.47194 * 299.99575 * 7 6 5 41 41 H 1.08992 * 109.47399 * 59.99748 * 7 6 5 42 42 H 0.97005 * 119.99680 * 359.97438 * 10 8 7 43 43 H 1.08999 * 109.63050 * 296.23285 * 13 11 10 44 44 H 1.09000 * 109.62392 * 56.62239 * 13 11 10 45 45 H 1.09006 * 109.18574 * 182.57938 * 14 13 11 46 46 H 1.09005 * 109.18759 * 301.87622 * 14 13 11 47 47 H 1.09002 * 110.43110 * 195.80271 * 17 15 14 48 48 H 1.08999 * 110.43945 * 318.30786 * 17 15 14 49 49 H 0.97000 * 120.00570 * 180.02562 * 22 21 19 50 50 H 1.09005 * 110.04491 * 240.06818 * 27 18 17 51 51 H 1.08998 * 110.09144 * 118.62169 * 27 18 17 52 52 H 1.08993 * 109.06005 * 305.29542 * 30 28 27 53 53 H 1.09003 * 109.05880 * 186.36853 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 8 3.9659 0.5792 -1.2201 6 6 5.3823 0.4187 -1.3214 7 6 5.7268 -0.2349 -2.6612 8 6 7.2205 -0.4048 -2.7678 9 8 7.9386 -0.0387 -1.8617 10 7 7.7582 -0.9626 -3.8706 11 6 9.2102 -1.1273 -3.9745 12 1 9.6244 -1.3638 -2.9944 13 6 9.8407 0.1658 -4.5041 14 6 11.3572 -0.0056 -4.5192 15 6 11.7700 -1.1368 -5.4629 16 1 11.6695 -0.8603 -6.5125 17 6 13.2229 -1.5341 -5.0631 18 7 13.0607 -2.3410 -3.8375 19 6 14.0070 -2.5139 -2.8630 20 1 13.7885 -3.1265 -2.0009 21 6 15.2471 -1.9019 -2.9833 22 7 15.5132 -1.1550 -4.0338 23 14 16.5383 -2.1385 -1.6543 24 1 16.8615 -3.5826 -1.5295 25 1 17.7658 -1.3855 -2.0171 26 1 16.0138 -1.6350 -0.3594 27 6 11.7088 -2.9291 -3.8389 28 6 11.0211 -2.4384 -5.1190 29 1 11.1913 -3.1653 -5.9132 30 6 9.5324 -2.2531 -4.9567 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3633 -1.0277 0.0005 34 1 1.6885 1.8464 0.8899 35 1 1.6887 1.8464 -0.8901 36 1 3.8507 0.5685 0.8428 37 1 3.9785 2.1766 0.0902 38 1 5.7355 -0.2135 -0.5068 39 1 5.8639 1.3945 -1.2591 40 1 5.2452 -1.2107 -2.7239 41 1 5.3736 0.3976 -3.4755 42 1 7.1838 -1.2551 -4.5955 43 1 9.4839 0.3596 -5.5156 44 1 9.5697 0.9980 -3.8544 45 1 11.8195 0.9242 -4.8508 46 1 11.7016 -0.2372 -3.5113 47 1 13.6855 -2.1281 -5.8513 48 1 13.8178 -0.6443 -4.8569 49 1 16.3799 -0.7276 -4.1182 50 1 11.1537 -2.5917 -2.9636 51 1 11.7739 -4.0172 -3.8432 52 1 9.0960 -3.1819 -4.5893 53 1 9.0955 -2.0152 -5.9266 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506859607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:12:56 Heat of formation + Delta-G solvation = -138.235355 kcal Electronic energy + Delta-G solvation = -30015.293635 eV Core-core repulsion = 25886.337042 eV Total energy + Delta-G solvation = -4128.956593 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.39628 -40.28545 -39.35391 -38.15070 -36.95841 -34.94592 -33.51369 -32.95314 -32.12875 -30.89458 -30.23305 -27.62686 -27.14013 -26.75910 -24.75003 -23.64545 -23.51206 -22.64477 -21.66366 -21.34477 -19.62842 -18.90927 -18.34960 -17.83000 -17.58522 -17.27039 -16.93715 -16.80082 -16.38691 -16.11929 -15.99997 -15.70788 -15.52987 -15.24871 -14.89571 -14.82127 -14.50770 -14.05128 -13.91918 -13.73858 -13.67216 -13.29290 -13.17802 -13.04941 -12.91267 -12.65519 -12.60773 -12.49788 -12.39459 -12.21587 -12.15474 -12.11731 -11.96435 -11.79143 -11.72901 -11.28911 -11.12210 -10.88382 -10.78336 -10.68902 -10.65457 -10.60033 -9.97850 -8.84003 -7.76094 -5.19290 1.43120 1.46559 1.52686 1.65059 1.99349 2.48954 2.82307 2.88485 3.32077 3.69295 3.72384 3.74198 3.79421 3.99894 4.06117 4.08780 4.18558 4.20829 4.25272 4.28255 4.35452 4.45306 4.48855 4.54657 4.56879 4.58502 4.59394 4.63897 4.68879 4.72079 4.74470 4.81819 4.85532 4.88434 4.88963 4.95266 5.09025 5.14298 5.22172 5.26650 5.37380 5.45727 5.50524 5.53601 5.61359 5.75978 5.88077 6.11608 6.27519 6.34909 6.62000 7.12862 7.32442 7.80680 8.45167 9.24670 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.018705 B = 0.001857 C = 0.001768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.548028 B =15073.453004 C =15835.176033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.417 6.417 3 C 0.062 3.938 4 C 0.055 3.945 5 O -0.395 6.395 6 C 0.078 3.922 7 C -0.126 4.126 8 C 0.512 3.488 9 O -0.591 6.591 10 N -0.706 5.706 11 C 0.149 3.851 12 H 0.050 0.950 13 C -0.110 4.110 14 C -0.095 4.095 15 C -0.096 4.096 16 H 0.105 0.895 17 C 0.156 3.844 18 N -0.622 5.622 19 C -0.239 4.239 20 H 0.073 0.927 21 C -0.066 4.066 22 N -0.945 5.945 23 Si 0.976 3.024 24 H -0.278 1.278 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.134 3.866 28 C -0.079 4.079 29 H 0.081 0.919 30 C -0.096 4.096 31 H 0.053 0.947 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.064 0.936 36 H 0.053 0.947 37 H 0.083 0.917 38 H 0.042 0.958 39 H 0.051 0.949 40 H 0.121 0.879 41 H 0.127 0.873 42 H 0.420 0.580 43 H 0.091 0.909 44 H 0.044 0.956 45 H 0.052 0.948 46 H 0.028 0.972 47 H -0.017 1.017 48 H 0.073 0.927 49 H 0.246 0.754 50 H 0.015 0.985 51 H 0.018 0.982 52 H 0.079 0.921 53 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.259 4.537 -0.944 31.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.336 6.336 3 C -0.014 4.014 4 C -0.021 4.021 5 O -0.315 6.315 6 C 0.001 3.999 7 C -0.165 4.165 8 C 0.300 3.700 9 O -0.471 6.471 10 N -0.358 5.358 11 C 0.044 3.956 12 H 0.068 0.932 13 C -0.149 4.149 14 C -0.133 4.133 15 C -0.115 4.115 16 H 0.123 0.877 17 C 0.031 3.969 18 N -0.348 5.348 19 C -0.368 4.368 20 H 0.091 0.909 21 C -0.259 4.259 22 N -0.595 5.595 23 Si 0.805 3.195 24 H -0.204 1.204 25 H -0.216 1.216 26 H -0.208 1.208 27 C 0.009 3.991 28 C -0.098 4.098 29 H 0.099 0.901 30 C -0.134 4.134 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.139 0.861 41 H 0.145 0.855 42 H 0.258 0.742 43 H 0.110 0.890 44 H 0.063 0.937 45 H 0.071 0.929 46 H 0.047 0.953 47 H 0.001 0.999 48 H 0.091 0.909 49 H 0.056 0.944 50 H 0.033 0.967 51 H 0.036 0.964 52 H 0.098 0.902 53 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -30.575 4.598 -0.397 30.921 hybrid contribution 1.301 -0.010 0.947 1.609 sum -29.274 4.588 0.550 29.637 Atomic orbital electron populations 1.22909 0.79545 1.03665 1.00923 1.87922 1.21434 1.28662 1.95626 1.22695 0.91447 0.85053 1.02246 1.22735 0.94215 0.98346 0.86794 1.87824 1.21862 1.82605 1.39182 1.22052 0.80916 0.99816 0.97108 1.21402 0.90193 1.05484 0.99438 1.20974 0.91184 0.76306 0.81527 1.90745 1.64424 1.51289 1.40646 1.45851 1.07572 1.62127 1.20234 1.20804 0.79846 0.95762 0.99164 0.93163 1.21763 0.94412 0.96857 1.01840 1.21218 0.95449 0.97757 0.98898 1.22498 0.95557 0.94290 0.99187 0.87663 1.22052 0.93610 0.95487 0.85764 1.44844 1.11330 1.56757 1.21876 1.19374 0.93182 1.24824 0.99436 0.90917 1.25566 0.99658 1.00363 1.00294 1.70032 1.22176 1.37258 1.30056 0.85185 0.78307 0.77543 0.78503 1.20433 1.21616 1.20820 1.21416 0.85774 0.95187 0.96746 1.21198 0.94504 0.97345 0.96747 0.90108 1.21132 0.94163 0.97857 1.00298 0.92811 0.93212 0.89059 0.89508 0.91796 0.92906 0.89944 0.93954 0.93097 0.86091 0.85520 0.74203 0.89038 0.93696 0.92898 0.95277 0.99920 0.90912 0.94410 0.96698 0.96362 0.90219 0.87630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.42 -7.35 10.67 -144.34 -1.54 -8.89 16 3 C 0.06 0.79 6.32 71.99 0.45 1.25 16 4 C 0.06 0.86 6.32 71.99 0.45 1.32 16 5 O -0.39 -7.87 10.31 -144.34 -1.49 -9.35 16 6 C 0.08 1.58 5.23 71.98 0.38 1.96 16 7 C -0.13 -2.01 6.07 29.85 0.18 -1.83 16 8 C 0.51 12.18 7.80 87.66 0.68 12.86 16 9 O -0.59 -20.68 15.66 -3.01 -0.05 -20.73 16 10 N -0.71 -13.72 5.10 -442.31 -2.26 -15.97 16 11 C 0.15 3.98 2.31 45.04 0.10 4.09 16 12 H 0.05 1.83 6.22 -2.39 -0.01 1.82 16 13 C -0.11 -3.12 5.52 30.57 0.17 -2.96 16 14 C -0.09 -3.49 4.81 30.46 0.15 -3.34 16 15 C -0.10 -3.45 3.72 -9.46 -0.04 -3.49 16 16 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 17 C 0.16 7.80 5.18 87.15 0.45 8.25 16 18 N -0.62 -33.26 2.93 -690.42 -2.02 -35.28 16 19 C -0.24 -14.09 10.28 84.03 0.86 -13.23 16 20 H 0.07 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.07 -3.91 5.49 84.86 0.47 -3.44 16 22 N -0.95 -57.86 10.09 21.65 0.22 -57.64 16 23 Si 0.98 47.73 29.55 68.60 2.03 49.75 16 24 H -0.28 -13.12 7.11 99.48 0.71 -12.42 16 25 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 26 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 27 C 0.13 5.72 6.25 86.33 0.54 6.26 16 28 C -0.08 -2.51 2.69 -10.99 -0.03 -2.54 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 C -0.10 -2.17 4.83 29.86 0.14 -2.02 16 31 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 38 H 0.04 0.98 8.10 -2.39 -0.02 0.96 16 39 H 0.05 1.08 8.10 -2.39 -0.02 1.06 16 40 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.42 4.50 8.60 -92.70 -0.80 3.70 16 43 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 46 H 0.03 1.34 7.17 -2.38 -0.02 1.32 16 47 H -0.02 -0.92 8.14 -2.39 -0.02 -0.94 16 48 H 0.07 4.18 5.68 -2.39 -0.01 4.17 16 49 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 50 H 0.02 0.67 6.50 -2.38 -0.02 0.65 16 51 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 52 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 53 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -80.12 412.51 1.19 -78.93 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: 0.08 Total: 14.55 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 6.22 Total: 4.63 kcal Atomic # 7 Polarization: -104.84 SS G_CDS: -4.06 Total: -108.90 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -3.07 Total: -38.97 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.75 kcal Total: -80.12 1.19 -78.93 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506859607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.310 kcal (2) G-P(sol) polarization free energy of solvation -80.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds