Wall clock time and date at job start Sat Apr 11 2020 06:13:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36935 * 119.99761 * 2 1 4 4 H 1.08000 * 120.00186 * 197.13672 * 3 2 1 5 5 C 1.38813 * 120.00201 * 17.13069 * 3 2 1 6 6 N 1.31620 * 119.99904 * 10.89623 * 5 3 2 7 7 Si 1.86806 * 120.00111 * 190.89310 * 5 3 2 8 8 H 1.48496 * 109.46817 * 60.00156 * 7 5 3 9 9 H 1.48492 * 109.47011 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.46770 * 300.00089 * 7 5 3 11 11 C 1.46503 * 120.00202 * 179.97438 * 2 1 3 12 12 C 1.53001 * 109.46840 * 90.00213 * 11 2 1 13 13 O 1.42899 * 109.47211 * 64.99715 * 12 11 2 14 14 C 1.42900 * 114.00055 * 179.97438 * 13 12 11 15 15 C 1.52996 * 109.47399 * 180.02562 * 14 13 12 16 16 N 1.46505 * 109.46890 * 64.99826 * 15 14 13 17 17 C 1.34783 * 119.99923 * 179.97438 * 16 15 14 18 18 O 1.21281 * 119.99665 * 0.02562 * 17 16 15 19 19 C 1.50698 * 119.99689 * 180.02562 * 17 16 15 20 20 C 1.53231 * 110.83307 * 56.63791 * 19 17 16 21 21 C 1.56037 * 102.62755 * 268.17908 * 20 19 17 22 22 O 1.45034 * 107.17346 * 359.04816 * 21 20 19 23 23 C 1.42315 * 105.23649 * 332.53098 * 22 21 20 24 24 H 1.08997 * 109.68211 * 287.85510 * 23 22 21 25 25 C 1.51480 * 117.37356 * 161.83438 * 23 22 21 26 26 C 1.54320 * 107.00991 * 180.33412 * 25 23 22 27 27 C 1.52582 * 111.35560 * 57.73980 * 26 25 23 28 28 C 1.51853 * 110.75930 * 186.37989 * 19 17 16 29 29 H 1.09001 * 109.47007 * 275.25828 * 1 2 3 30 30 H 1.08996 * 109.47221 * 35.26265 * 1 2 3 31 31 H 1.09000 * 109.46962 * 155.26326 * 1 2 3 32 32 H 0.96995 * 120.00138 * 180.02562 * 6 5 3 33 33 H 1.08996 * 109.46786 * 330.00489 * 11 2 1 34 34 H 1.08995 * 109.46768 * 210.00192 * 11 2 1 35 35 H 1.09010 * 109.46958 * 304.99861 * 12 11 2 36 36 H 1.08997 * 109.47362 * 185.00379 * 12 11 2 37 37 H 1.08998 * 109.47148 * 60.00056 * 14 13 12 38 38 H 1.09006 * 109.46999 * 300.00424 * 14 13 12 39 39 H 1.08994 * 109.47194 * 305.00362 * 15 14 13 40 40 H 1.08997 * 109.47335 * 185.00013 * 15 14 13 41 41 H 0.97000 * 120.00040 * 0.02562 * 16 15 14 42 42 H 1.09004 * 110.69425 * 26.85760 * 20 19 17 43 43 H 1.08997 * 110.70079 * 150.06592 * 20 19 17 44 44 H 1.08996 * 110.26031 * 239.43584 * 21 20 19 45 45 H 1.09007 * 109.63231 * 118.30386 * 21 20 19 46 46 H 1.09004 * 109.87651 * 300.05794 * 25 23 22 47 47 H 1.09005 * 109.87899 * 61.12538 * 25 23 22 48 48 H 1.09000 * 109.26699 * 297.15339 * 26 25 23 49 49 H 1.09002 * 108.96463 * 178.11721 * 26 25 23 50 50 H 1.09003 * 109.07198 * 184.55316 * 27 26 25 51 51 H 1.08994 * 109.08155 * 65.51468 * 27 26 25 52 52 H 1.09003 * 109.89410 * 296.87945 * 28 19 17 53 53 H 1.09003 * 109.95397 * 175.80907 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1937 1.2068 -0.2756 5 6 1.5018 2.3614 0.3541 6 7 0.3017 2.3149 0.8927 7 14 2.3331 4.0093 0.0662 8 1 2.6127 4.1762 -1.3826 9 1 1.4394 5.1018 0.5275 10 1 3.6083 4.0597 0.8255 11 6 2.1976 -1.2687 0.0006 12 6 2.4526 -1.7109 -1.4418 13 8 3.3210 -0.7732 -2.0810 14 6 3.6249 -1.0952 -3.4397 15 6 4.5568 -0.0297 -4.0202 16 7 5.8410 -0.0680 -3.3161 17 6 6.8243 0.7870 -3.6606 18 8 6.6457 1.5885 -4.5532 19 6 8.1454 0.7471 -2.9367 20 6 8.7699 -0.6498 -3.0189 21 6 8.2314 -1.3407 -1.7276 22 8 7.4162 -0.3658 -1.0285 23 6 7.9447 0.9013 -1.4033 24 1 8.9099 1.0539 -0.9204 25 6 7.0660 2.1153 -1.1825 26 6 7.8611 3.3434 -1.6735 27 6 8.2608 3.1969 -3.1388 28 6 9.0375 1.8928 -3.3812 29 1 -0.3633 0.0942 1.0234 30 1 -0.3633 0.8391 -0.5933 31 1 -0.3633 -0.9334 -0.4300 32 1 -0.1512 3.1362 1.1398 33 1 1.6085 -2.0281 0.5147 34 1 3.1499 -1.1381 0.5144 35 1 1.5062 -1.7557 -1.9808 36 1 2.9182 -2.6965 -1.4427 37 1 2.7031 -1.1276 -4.0204 38 1 4.1151 -2.0680 -3.4816 39 1 4.1045 0.9544 -3.8975 40 1 4.7176 -0.2260 -5.0802 41 1 5.9839 -0.7093 -2.6025 42 1 8.4311 -1.1710 -3.9143 43 1 9.8578 -0.5874 -2.9966 44 1 9.0606 -1.6544 -1.0936 45 1 7.6251 -2.2046 -2.0001 46 1 6.1416 2.0120 -1.7508 47 1 6.8399 2.2211 -0.1214 48 1 8.7605 3.4552 -1.0680 49 1 7.2431 4.2341 -1.5599 50 1 8.8868 4.0427 -3.4235 51 1 7.3617 3.1960 -3.7550 52 1 9.2709 1.7915 -4.4411 53 1 9.9581 1.8954 -2.7975 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506975574.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:11 Heat of formation + Delta-G solvation = -123.934770 kcal Electronic energy + Delta-G solvation = -32970.874426 eV Core-core repulsion = 28842.537952 eV Total energy + Delta-G solvation = -4128.336474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.59138 -39.62134 -38.99152 -37.47100 -37.03459 -35.53145 -33.76093 -33.39340 -31.27852 -30.46480 -29.66751 -29.19762 -27.89134 -24.98933 -24.75758 -23.89340 -23.25135 -22.64934 -22.07655 -21.82390 -20.68646 -18.72276 -17.99602 -17.77070 -17.43546 -17.07195 -16.90235 -16.71692 -16.48252 -16.04321 -15.87948 -15.44904 -15.29008 -15.02000 -14.97412 -14.80365 -14.62966 -14.11581 -13.97627 -13.89902 -13.69864 -13.27598 -13.03510 -13.01328 -12.87489 -12.75291 -12.70654 -12.68890 -12.52890 -12.21260 -12.17084 -12.12827 -12.06134 -11.84339 -11.70006 -11.59377 -11.54311 -11.06917 -10.63193 -10.57869 -10.54756 -10.34290 -10.01790 -8.76394 -7.76897 -5.17524 1.38586 1.41530 1.48098 1.56250 2.22597 2.51492 2.70162 2.87942 3.37076 3.47124 3.48872 3.63621 3.75931 3.89296 3.95070 3.97594 4.03730 4.16084 4.17807 4.24764 4.30024 4.38459 4.40260 4.47976 4.51517 4.56462 4.60600 4.66751 4.71956 4.74148 4.83118 4.86304 4.88498 4.89548 4.90214 4.95295 5.01137 5.06129 5.12748 5.18698 5.20409 5.28938 5.40828 5.46681 5.61440 5.70025 5.80362 5.86572 6.36475 6.52724 6.59423 7.23090 7.27142 7.96126 8.34504 9.26847 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.011315 B = 0.004408 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.070687 B = 6350.386202 C = 7537.883138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.617 5.617 3 C -0.215 4.215 4 H 0.064 0.936 5 C -0.063 4.063 6 N -0.947 5.947 7 Si 0.952 3.048 8 H -0.293 1.293 9 H -0.292 1.292 10 H -0.278 1.278 11 C 0.144 3.856 12 C 0.053 3.947 13 O -0.391 6.391 14 C 0.051 3.949 15 C 0.124 3.876 16 N -0.710 5.710 17 C 0.525 3.475 18 O -0.577 6.577 19 C -0.117 4.117 20 C -0.131 4.131 21 C 0.032 3.968 22 O -0.387 6.387 23 C 0.093 3.907 24 H 0.102 0.898 25 C -0.125 4.125 26 C -0.111 4.111 27 C -0.139 4.139 28 C -0.079 4.079 29 H 0.001 0.999 30 H 0.019 0.981 31 H 0.028 0.972 32 H 0.243 0.757 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.036 0.964 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.077 0.923 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.413 0.587 42 H 0.086 0.914 43 H 0.119 0.881 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.037 0.963 47 H 0.065 0.935 48 H 0.091 0.909 49 H 0.054 0.946 50 H 0.078 0.922 51 H 0.056 0.944 52 H 0.072 0.928 53 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.782 -10.875 -8.967 25.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.340 5.340 3 C -0.346 4.346 4 H 0.081 0.919 5 C -0.256 4.256 6 N -0.597 5.597 7 Si 0.782 3.218 8 H -0.221 1.221 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.018 3.982 12 C -0.026 4.026 13 O -0.311 6.311 14 C -0.026 4.026 15 C 0.000 4.000 16 N -0.363 5.363 17 C 0.312 3.688 18 O -0.458 6.458 19 C -0.121 4.121 20 C -0.169 4.169 21 C -0.044 4.044 22 O -0.306 6.306 23 C 0.035 3.965 24 H 0.119 0.881 25 C -0.163 4.163 26 C -0.148 4.148 27 C -0.177 4.177 28 C -0.117 4.117 29 H 0.019 0.981 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.095 0.905 34 H 0.063 0.937 35 H 0.054 0.946 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.095 0.905 39 H 0.055 0.945 40 H 0.112 0.888 41 H 0.252 0.748 42 H 0.104 0.896 43 H 0.137 0.863 44 H 0.111 0.889 45 H 0.114 0.886 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.109 0.891 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.074 0.926 52 H 0.090 0.910 53 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 20.419 -10.089 -9.283 24.595 hybrid contribution -0.510 0.964 -0.006 1.091 sum 19.909 -9.125 -9.289 23.789 Atomic orbital electron populations 1.20558 0.82615 0.95790 0.97495 1.44136 1.02103 1.01786 1.85979 1.19349 0.94733 0.85641 1.34848 0.91853 1.25479 0.98109 1.00617 1.01397 1.70233 1.15381 1.25921 1.48162 0.85547 0.77820 0.81130 0.77291 1.22063 1.21763 1.20360 1.21023 0.95942 0.87522 0.93668 1.23254 0.92331 0.91600 0.95380 1.88118 1.67542 1.50814 1.24594 1.22741 0.98093 0.97395 0.84342 1.21327 0.83272 0.98929 0.96519 1.46111 1.13085 1.38392 1.38749 1.20647 0.86134 0.79333 0.82645 1.90590 1.82928 1.38791 1.33497 1.22228 0.93457 0.99310 0.97089 1.23000 1.03327 0.91550 0.98979 1.24107 0.96037 0.91938 0.92319 1.88872 1.56708 1.15860 1.69191 1.22629 0.97748 0.84979 0.91176 0.88083 1.21611 0.98221 0.94876 1.01612 1.21593 1.00268 0.95883 0.97059 1.21841 1.01403 0.98533 0.95904 1.21227 0.97213 0.90942 1.02306 0.98090 0.96182 0.95328 0.94743 0.90544 0.93721 0.94562 0.91119 0.91579 0.90542 0.94469 0.88840 0.74850 0.89568 0.86291 0.88913 0.88571 0.94464 0.91611 0.89088 0.92758 0.90318 0.92553 0.90964 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.25 8.96 127.77 1.14 10.40 16 2 N -0.62 -32.04 2.91 -726.94 -2.12 -34.15 16 3 C -0.21 -12.54 9.25 84.03 0.78 -11.77 16 4 H 0.06 3.79 7.72 -2.91 -0.02 3.76 16 5 C -0.06 -3.80 5.17 84.86 0.44 -3.36 16 6 N -0.95 -58.97 10.26 21.65 0.22 -58.74 16 7 Si 0.95 49.67 29.57 68.60 2.03 51.70 16 8 H -0.29 -15.49 7.11 99.48 0.71 -14.79 16 9 H -0.29 -15.02 7.11 99.48 0.71 -14.31 16 10 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 11 C 0.14 5.82 6.07 86.38 0.52 6.34 16 12 C 0.05 1.76 6.28 71.98 0.45 2.22 16 13 O -0.39 -14.50 9.65 -148.98 -1.44 -15.94 16 14 C 0.05 1.41 6.07 71.98 0.44 1.84 16 15 C 0.12 3.71 6.06 86.38 0.52 4.23 16 16 N -0.71 -20.52 5.15 -463.06 -2.39 -22.90 16 17 C 0.52 15.53 4.44 87.66 0.39 15.92 16 18 O -0.58 -20.95 13.76 -3.03 -0.04 -20.99 16 19 C -0.12 -2.49 0.69 -52.40 -0.04 -2.53 16 20 C -0.13 -1.76 6.21 31.72 0.20 -1.56 16 21 C 0.03 0.47 6.83 73.03 0.50 0.97 16 22 O -0.39 -9.57 9.76 -148.98 -1.45 -11.03 16 23 C 0.09 2.15 2.49 30.93 0.08 2.23 16 24 H 0.10 1.79 7.94 -2.39 -0.02 1.77 16 25 C -0.13 -3.78 5.82 30.54 0.18 -3.60 16 26 C -0.11 -2.74 5.85 30.90 0.18 -2.55 16 27 C -0.14 -3.36 5.53 30.70 0.17 -3.19 16 28 C -0.08 -1.49 4.84 30.46 0.15 -1.34 16 29 H 0.00 0.04 7.51 -2.39 -0.02 0.03 16 30 H 0.02 1.12 6.87 -2.39 -0.02 1.10 16 31 H 0.03 1.22 8.03 -2.39 -0.02 1.20 16 32 H 0.24 14.84 8.31 -92.71 -0.77 14.07 16 33 H 0.08 2.67 8.07 -2.39 -0.02 2.65 16 34 H 0.04 1.88 8.04 -2.39 -0.02 1.86 16 35 H 0.04 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 37 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 39 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.41 11.21 5.53 -92.71 -0.51 10.70 16 42 H 0.09 1.13 7.90 -2.38 -0.02 1.11 16 43 H 0.12 0.91 8.03 -2.39 -0.02 0.89 16 44 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.10 1.23 8.08 -2.38 -0.02 1.21 16 46 H 0.04 1.42 6.61 -2.39 -0.02 1.40 16 47 H 0.07 2.09 8.14 -2.38 -0.02 2.07 16 48 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 49 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.06 1.83 5.37 -2.39 -0.01 1.82 16 52 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 53 H 0.10 1.27 8.01 -2.39 -0.02 1.25 16 Total: -1.00 -77.62 402.69 1.28 -76.34 By element: Atomic # 1 Polarization: 21.12 SS G_CDS: 0.37 Total: 21.49 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: 6.10 Total: 14.23 kcal Atomic # 7 Polarization: -111.52 SS G_CDS: -4.28 Total: -115.80 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -2.93 Total: -47.96 kcal Atomic # 14 Polarization: 49.67 SS G_CDS: 2.03 Total: 51.70 kcal Total: -77.62 1.28 -76.34 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975574.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.592 kcal (2) G-P(sol) polarization free energy of solvation -77.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds