Wall clock time and date at job start Sat Apr 11 2020 06:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36930 * 120.00139 * 2 1 4 4 H 1.08000 * 120.00133 * 199.95134 * 3 2 1 5 5 C 1.38818 * 120.00077 * 19.95784 * 3 2 1 6 6 N 1.31617 * 119.99761 * 14.79267 * 5 3 2 7 7 Si 1.86797 * 120.00217 * 194.79311 * 5 3 2 8 8 H 1.48500 * 109.47222 * 89.99686 * 7 5 3 9 9 H 1.48499 * 109.46920 * 210.00029 * 7 5 3 10 10 H 1.48500 * 109.46856 * 329.99687 * 7 5 3 11 11 C 1.46505 * 119.99866 * 180.02562 * 2 1 3 12 12 C 1.52991 * 109.47272 * 89.99374 * 11 2 1 13 13 O 1.42899 * 109.47206 * 65.00465 * 12 11 2 14 14 C 1.42903 * 114.00165 * 180.02562 * 13 12 11 15 15 C 1.52995 * 109.46959 * 179.97438 * 14 13 12 16 16 N 1.46500 * 109.47296 * 64.99681 * 15 14 13 17 17 C 1.34783 * 120.00203 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99534 * 0.02562 * 17 16 15 19 19 C 1.50695 * 120.00057 * 180.02562 * 17 16 15 20 20 C 1.53237 * 110.83800 * 301.53917 * 19 17 16 21 21 C 1.55075 * 103.07991 * 90.93331 * 20 19 17 22 22 O 1.45037 * 107.08474 * 1.66019 * 21 20 19 23 23 C 1.42314 * 105.23230 * 26.99859 * 22 21 20 24 24 H 1.09000 * 109.43748 * 72.03667 * 23 22 21 25 25 C 1.51476 * 117.60984 * 198.02003 * 23 22 21 26 26 C 1.53759 * 107.35098 * 179.57745 * 25 23 22 27 27 C 1.52578 * 111.39747 * 302.55205 * 26 25 23 28 28 C 1.51853 * 110.76985 * 171.14890 * 19 17 16 29 29 H 1.09005 * 109.46701 * 275.05453 * 1 2 3 30 30 H 1.08997 * 109.47439 * 35.05251 * 1 2 3 31 31 H 1.08997 * 109.47635 * 155.06034 * 1 2 3 32 32 H 0.97000 * 120.00333 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.46768 * 329.99147 * 11 2 1 34 34 H 1.09001 * 109.46754 * 210.00144 * 11 2 1 35 35 H 1.09004 * 109.47726 * 304.99879 * 12 11 2 36 36 H 1.09000 * 109.47038 * 185.00095 * 12 11 2 37 37 H 1.08996 * 109.47354 * 59.99571 * 14 13 12 38 38 H 1.09003 * 109.46530 * 299.99116 * 14 13 12 39 39 H 1.08996 * 109.47658 * 304.99478 * 15 14 13 40 40 H 1.09009 * 109.46915 * 184.99433 * 15 14 13 41 41 H 0.96997 * 119.99962 * 0.02562 * 16 15 14 42 42 H 1.09006 * 110.69502 * 209.33246 * 20 19 17 43 43 H 1.09004 * 110.69324 * 332.53424 * 20 19 17 44 44 H 1.08999 * 109.91161 * 242.29812 * 21 20 19 45 45 H 1.09000 * 109.91028 * 121.01945 * 21 20 19 46 46 H 1.08993 * 109.87967 * 299.03889 * 25 23 22 47 47 H 1.09000 * 109.87789 * 60.11883 * 25 23 22 48 48 H 1.08995 * 109.09570 * 63.04349 * 26 25 23 49 49 H 1.09003 * 109.09634 * 182.12911 * 26 25 23 50 50 H 1.09005 * 109.07972 * 175.26051 * 27 26 25 51 51 H 1.08996 * 109.07890 * 294.30158 * 27 26 25 52 52 H 1.09004 * 109.89311 * 63.09541 * 28 19 17 53 53 H 1.09005 * 109.89334 * 184.20259 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1811 1.2139 -0.3191 5 6 1.5182 2.3520 0.4103 6 7 0.3790 2.2875 1.0665 7 14 2.2850 4.0126 0.0313 8 1 1.7879 4.4995 -1.2806 9 1 1.9141 4.9829 1.0925 10 1 3.7628 3.8753 -0.0193 11 6 2.1975 -1.2688 -0.0006 12 6 2.4524 -1.7099 -1.4432 13 8 3.3208 -0.7719 -2.0818 14 6 3.6238 -1.0922 -3.4411 15 6 4.5549 -0.0257 -4.0210 16 7 5.8396 -0.0644 -3.3180 17 6 6.8223 0.7914 -3.6623 18 8 6.6428 1.5938 -4.5538 19 6 8.1440 0.7511 -2.9396 20 6 7.9512 0.9843 -1.4374 21 6 7.7710 -0.4514 -0.8796 22 8 7.9028 -1.3633 -1.9997 23 6 8.7334 -0.6870 -2.9367 24 1 9.7571 -0.6632 -2.5630 25 6 8.7244 -1.1822 -4.3682 26 6 9.6848 -0.2874 -5.1690 27 6 9.2829 1.1817 -5.0782 28 6 9.1621 1.6422 -3.6290 29 1 -0.3633 0.0905 1.0237 30 1 -0.3634 0.8412 -0.5902 31 1 -0.3634 -0.9318 -0.4333 32 1 -0.0621 3.1023 1.3536 33 1 1.6084 -2.0286 0.5131 34 1 3.1499 -1.1386 0.5134 35 1 1.5060 -1.7543 -1.9822 36 1 2.9179 -2.6955 -1.4449 37 1 2.7016 -1.1233 -4.0212 38 1 4.1135 -2.0650 -3.4845 39 1 4.1024 0.9581 -3.8969 40 1 4.7149 -0.2209 -5.0815 41 1 5.9833 -0.7065 -2.6053 42 1 8.8326 1.4579 -1.0048 43 1 7.0602 1.5843 -1.2520 44 1 6.7828 -0.5541 -0.4314 45 1 8.5416 -0.6608 -0.1377 46 1 9.0647 -2.2170 -4.4046 47 1 7.7179 -1.1073 -4.7799 48 1 10.6942 -0.4058 -4.7754 49 1 9.6713 -0.5958 -6.2144 50 1 10.0327 1.7882 -5.5862 51 1 8.3204 1.3189 -5.5710 52 1 8.8304 2.6800 -3.5945 53 1 10.1314 1.5453 -3.1398 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506975578.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:19 Heat of formation + Delta-G solvation = -127.314242 kcal Electronic energy + Delta-G solvation = -32532.634911 eV Core-core repulsion = 28404.151893 eV Total energy + Delta-G solvation = -4128.483018 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.63881 -39.64698 -39.00718 -37.49012 -37.05750 -35.54657 -33.77935 -33.40511 -31.30981 -30.50695 -29.74539 -29.21301 -27.87041 -25.00578 -24.77144 -23.91622 -23.23724 -22.66881 -22.08316 -21.78901 -20.68402 -18.70318 -18.00359 -17.73211 -17.53100 -17.08987 -16.92047 -16.74917 -16.44613 -16.05498 -15.86276 -15.49435 -15.27847 -15.06493 -14.93491 -14.84019 -14.67866 -14.16729 -13.95038 -13.87469 -13.72647 -13.28938 -13.06042 -12.97773 -12.92837 -12.75592 -12.71729 -12.66803 -12.52441 -12.26660 -12.20401 -12.12328 -12.02586 -11.85315 -11.70897 -11.57590 -11.52648 -11.05305 -10.67761 -10.59256 -10.57370 -10.35588 -10.03404 -8.74182 -7.78275 -5.20333 1.39671 1.43411 1.50156 1.54715 2.21848 2.51666 2.63051 2.86022 3.35571 3.48092 3.50031 3.59468 3.75685 3.87064 3.96016 3.99613 4.04696 4.16531 4.17945 4.22704 4.34047 4.38210 4.40424 4.49489 4.51090 4.56920 4.60690 4.66256 4.72109 4.78484 4.82623 4.84740 4.87476 4.89481 4.90436 4.96437 4.98671 5.08044 5.15410 5.18909 5.22604 5.32026 5.41023 5.42990 5.61000 5.70452 5.77506 5.78656 6.36243 6.50394 6.57871 7.21849 7.25080 7.94965 8.35364 9.25831 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013591 B = 0.003546 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2059.628126 B = 7893.408718 C = 8635.317978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.176 3.824 2 N -0.615 5.615 3 C -0.222 4.222 4 H 0.066 0.934 5 C -0.059 4.059 6 N -0.943 5.943 7 Si 0.952 3.048 8 H -0.297 1.297 9 H -0.293 1.293 10 H -0.275 1.275 11 C 0.145 3.855 12 C 0.052 3.948 13 O -0.391 6.391 14 C 0.052 3.948 15 C 0.124 3.876 16 N -0.710 5.710 17 C 0.526 3.474 18 O -0.578 6.578 19 C -0.119 4.119 20 C -0.143 4.143 21 C 0.041 3.959 22 O -0.379 6.379 23 C 0.089 3.911 24 H 0.100 0.900 25 C -0.116 4.116 26 C -0.108 4.108 27 C -0.138 4.138 28 C -0.085 4.085 29 H 0.005 0.995 30 H 0.011 0.989 31 H 0.032 0.968 32 H 0.244 0.756 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.036 0.964 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.043 0.957 40 H 0.089 0.911 41 H 0.413 0.587 42 H 0.115 0.885 43 H 0.059 0.941 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.090 0.910 47 H 0.049 0.951 48 H 0.086 0.914 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.056 0.944 52 H 0.055 0.945 53 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.666 -11.462 -9.870 25.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.338 5.338 3 C -0.353 4.353 4 H 0.084 0.916 5 C -0.253 4.253 6 N -0.592 5.592 7 Si 0.782 3.218 8 H -0.224 1.224 9 H -0.219 1.219 10 H -0.200 1.200 11 C 0.019 3.981 12 C -0.027 4.027 13 O -0.311 6.311 14 C -0.024 4.024 15 C 0.000 4.000 16 N -0.364 5.364 17 C 0.313 3.687 18 O -0.459 6.459 19 C -0.122 4.122 20 C -0.181 4.181 21 C -0.035 4.035 22 O -0.298 6.298 23 C 0.031 3.969 24 H 0.118 0.882 25 C -0.154 4.154 26 C -0.145 4.145 27 C -0.175 4.175 28 C -0.122 4.122 29 H 0.023 0.977 30 H 0.030 0.970 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.094 0.906 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.252 0.748 42 H 0.134 0.866 43 H 0.078 0.922 44 H 0.101 0.899 45 H 0.114 0.886 46 H 0.109 0.891 47 H 0.068 0.932 48 H 0.105 0.895 49 H 0.093 0.907 50 H 0.095 0.905 51 H 0.074 0.926 52 H 0.074 0.926 53 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 20.400 -10.860 -10.341 25.319 hybrid contribution -0.568 1.218 0.112 1.349 sum 19.833 -9.642 -10.229 24.309 Atomic orbital electron populations 1.20540 0.82903 0.95821 0.97599 1.44113 1.01955 1.01858 1.85857 1.19401 0.96381 0.85926 1.33555 0.91592 1.25507 0.98786 1.00766 1.00236 1.70218 1.19966 1.26463 1.42599 0.85476 0.78199 0.81441 0.76654 1.22446 1.21928 1.20035 1.21029 0.96115 0.87533 0.93467 1.23272 0.92340 0.91565 0.95473 1.88077 1.67594 1.50898 1.24517 1.22717 0.98075 0.97306 0.84349 1.21329 0.83158 0.99112 0.96446 1.46147 1.13081 1.37841 1.39345 1.20611 0.86000 0.79441 0.82629 1.90600 1.82614 1.39606 1.33102 1.22203 0.92927 1.01250 0.95850 1.22837 1.04299 0.98465 0.92516 1.23779 1.03568 0.86780 0.89364 1.88742 1.70339 1.40728 1.29959 1.22759 0.95369 0.87228 0.91549 0.88229 1.21515 1.00551 1.01250 0.92061 1.21481 0.99281 0.93234 1.00497 1.21594 1.02616 0.96838 0.96475 1.21015 0.97426 0.97865 0.95932 0.97681 0.96989 0.94930 0.94662 0.90627 0.93362 0.94533 0.91253 0.91452 0.90949 0.93835 0.89267 0.74760 0.86637 0.92217 0.89886 0.88555 0.89110 0.93234 0.89544 0.90722 0.90517 0.92567 0.92608 0.88120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.83 8.97 127.77 1.15 9.98 16 2 N -0.61 -31.04 2.91 -726.93 -2.11 -33.15 16 3 C -0.22 -12.56 9.21 84.04 0.77 -11.79 16 4 H 0.07 3.78 7.67 -2.91 -0.02 3.75 16 5 C -0.06 -3.48 5.07 84.86 0.43 -3.05 16 6 N -0.94 -57.76 10.63 21.65 0.23 -57.53 16 7 Si 0.95 48.41 29.58 68.60 2.03 50.44 16 8 H -0.30 -15.26 7.11 99.48 0.71 -14.56 16 9 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 10 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 11 C 0.14 5.61 6.07 86.38 0.52 6.13 16 12 C 0.05 1.69 6.28 71.98 0.45 2.14 16 13 O -0.39 -14.04 9.58 -148.98 -1.43 -15.47 16 14 C 0.05 1.44 6.07 71.98 0.44 1.88 16 15 C 0.12 3.70 6.06 86.38 0.52 4.23 16 16 N -0.71 -20.77 5.10 -463.06 -2.36 -23.14 16 17 C 0.53 15.85 4.47 87.65 0.39 16.24 16 18 O -0.58 -21.26 13.94 -3.03 -0.04 -21.30 16 19 C -0.12 -2.63 0.71 -52.39 -0.04 -2.67 16 20 C -0.14 -2.98 6.16 31.38 0.19 -2.78 16 21 C 0.04 0.79 6.85 72.69 0.50 1.29 16 22 O -0.38 -7.89 9.64 -148.98 -1.44 -9.33 16 23 C 0.09 1.59 2.46 30.93 0.08 1.66 16 24 H 0.10 1.32 7.96 -2.39 -0.02 1.30 16 25 C -0.12 -1.99 5.79 30.35 0.18 -1.81 16 26 C -0.11 -1.55 5.85 30.71 0.18 -1.37 16 27 C -0.14 -2.64 5.52 30.30 0.17 -2.48 16 28 C -0.08 -1.64 4.77 30.07 0.14 -1.49 16 29 H 0.00 0.27 7.41 -2.38 -0.02 0.25 16 30 H 0.01 0.64 7.18 -2.39 -0.02 0.62 16 31 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 32 H 0.24 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.08 2.56 8.07 -2.38 -0.02 2.54 16 34 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 35 H 0.04 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 38 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.36 8.14 -2.38 -0.02 2.34 16 41 H 0.41 11.46 5.47 -92.71 -0.51 10.95 16 42 H 0.12 1.73 8.05 -2.38 -0.02 1.71 16 43 H 0.06 1.60 7.91 -2.38 -0.02 1.58 16 44 H 0.08 1.84 8.11 -2.39 -0.02 1.82 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.05 1.09 6.58 -2.39 -0.02 1.07 16 48 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 49 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 51 H 0.06 1.50 5.52 -2.39 -0.01 1.49 16 52 H 0.06 1.29 8.13 -2.38 -0.02 1.27 16 53 H 0.10 1.30 8.02 -2.38 -0.02 1.28 16 Total: -1.00 -73.68 403.05 1.32 -72.36 By element: Atomic # 1 Polarization: 20.65 SS G_CDS: 0.37 Total: 21.02 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.08 Total: 16.10 kcal Atomic # 7 Polarization: -109.57 SS G_CDS: -4.25 Total: -113.82 kcal Atomic # 8 Polarization: -43.20 SS G_CDS: -2.91 Total: -46.10 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Total: -73.68 1.32 -72.36 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975578.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.956 kcal (2) G-P(sol) polarization free energy of solvation -73.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds