Wall clock time and date at job start Sat Apr 11 2020 06:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.36938 * 119.99915 * 2 1 4 4 H 1.07996 * 119.99888 * 202.93640 * 3 2 1 5 5 C 1.38809 * 119.99890 * 22.93259 * 3 2 1 6 6 N 1.31620 * 120.00330 * 13.11619 * 5 3 2 7 7 Si 1.86803 * 120.00310 * 193.10820 * 5 3 2 8 8 H 1.48499 * 109.46653 * 60.00214 * 7 5 3 9 9 H 1.48493 * 109.47352 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47199 * 300.00700 * 7 5 3 11 11 C 1.46499 * 120.00269 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.47259 * 89.99209 * 11 2 1 13 13 O 1.42902 * 109.46617 * 65.00334 * 12 11 2 14 14 C 1.42901 * 113.99590 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46993 * 179.97438 * 14 13 12 16 16 N 1.46495 * 109.47307 * 64.99939 * 15 14 13 17 17 C 1.34777 * 120.00272 * 179.97438 * 16 15 14 18 18 O 1.21280 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.50701 * 120.00095 * 180.02562 * 17 16 15 20 20 C 1.54208 * 105.66166 * 61.45874 * 19 17 16 21 21 C 1.55341 * 101.75216 * 126.80155 * 20 19 17 22 22 O 1.44952 * 102.94742 * 324.27966 * 21 20 19 23 23 C 1.45799 * 104.82245 * 44.45852 * 22 21 20 24 24 H 1.08999 * 108.54329 * 207.45035 * 23 22 21 25 25 C 1.51604 * 107.23368 * 89.24501 * 23 22 21 26 26 C 1.52212 * 112.88523 * 207.20996 * 25 23 22 27 27 C 1.53443 * 108.03515 * 58.81174 * 26 25 23 28 28 C 1.49432 * 105.64353 * 301.29530 * 19 17 16 29 29 H 1.09004 * 109.46774 * 275.12101 * 1 2 3 30 30 H 1.08993 * 109.47507 * 35.11909 * 1 2 3 31 31 H 1.08999 * 109.46938 * 155.12717 * 1 2 3 32 32 H 0.96999 * 120.00507 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.46705 * 329.99457 * 11 2 1 34 34 H 1.08992 * 109.47273 * 210.00021 * 11 2 1 35 35 H 1.08993 * 109.47382 * 305.00310 * 12 11 2 36 36 H 1.08998 * 109.47080 * 184.99911 * 12 11 2 37 37 H 1.09007 * 109.46958 * 60.00629 * 14 13 12 38 38 H 1.08995 * 109.47728 * 300.00016 * 14 13 12 39 39 H 1.09009 * 109.47362 * 305.00172 * 15 14 13 40 40 H 1.09002 * 109.47163 * 185.00558 * 15 14 13 41 41 H 0.97001 * 120.00177 * 0.02562 * 16 15 14 42 42 H 1.09006 * 110.96641 * 8.68449 * 20 19 17 43 43 H 1.08996 * 110.96949 * 244.92135 * 20 19 17 44 44 H 1.08994 * 110.74538 * 82.69257 * 21 20 19 45 45 H 1.08998 * 110.74661 * 205.85941 * 21 20 19 46 46 H 1.08995 * 108.80195 * 328.09079 * 25 23 22 47 47 H 1.09004 * 108.80007 * 86.33542 * 25 23 22 48 48 H 1.08999 * 109.74512 * 178.44634 * 26 25 23 49 49 H 1.08994 * 109.74943 * 299.17212 * 26 25 23 50 50 H 1.09002 * 109.83346 * 51.11816 * 27 26 25 51 51 H 1.08999 * 109.83544 * 172.00103 * 27 26 25 52 52 H 1.09001 * 108.71064 * 329.56583 * 28 19 17 53 53 H 1.08997 * 108.71130 * 87.57757 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1656 1.2229 -0.3645 5 6 1.5379 2.3405 0.4684 6 7 0.4117 2.2606 1.1450 7 14 2.3129 4.0079 0.1388 8 1 2.4150 4.2252 -1.3267 9 1 1.4707 5.0729 0.7401 10 1 3.6696 4.0510 0.7412 11 6 2.1976 -1.2687 -0.0006 12 6 2.4524 -1.7098 -1.4433 13 8 3.3209 -0.7716 -2.0818 14 6 3.6247 -1.0926 -3.4407 15 6 4.5556 -0.0259 -4.0208 16 7 5.8400 -0.0636 -3.3171 17 6 6.8224 0.7924 -3.6613 18 8 6.6431 1.5943 -4.5533 19 6 8.1438 0.7531 -2.9379 20 6 8.7201 -0.6531 -3.1996 21 6 10.1318 -0.3182 -3.7546 22 8 9.9007 0.8889 -4.5231 23 6 9.0519 1.7153 -3.6732 24 1 8.4529 2.3664 -4.3098 25 6 9.9677 2.5578 -2.8072 26 6 9.3316 2.9522 -1.4818 27 6 8.9593 1.6661 -0.7322 28 6 7.8229 0.9980 -1.4991 29 1 -0.3633 0.0917 1.0236 30 1 -0.3634 0.8405 -0.5911 31 1 -0.3633 -0.9323 -0.4322 32 1 -0.0156 3.0673 1.4726 33 1 1.6085 -2.0285 0.5130 34 1 3.1499 -1.1386 0.5133 35 1 1.5061 -1.7542 -1.9822 36 1 2.9181 -2.6953 -1.4450 37 1 2.7028 -1.1243 -4.0214 38 1 4.1148 -2.0652 -3.4836 39 1 4.1025 0.9579 -3.8973 40 1 4.7162 -0.2214 -5.0810 41 1 5.9836 -0.7052 -2.6039 42 1 8.1255 -1.1864 -3.9414 43 1 8.7902 -1.2244 -2.2740 44 1 10.8319 -0.1298 -2.9408 45 1 10.4948 -1.1210 -4.3963 46 1 10.8780 1.9932 -2.6056 47 1 10.2324 3.4634 -3.3530 48 1 10.0412 3.5309 -0.8905 49 1 8.4351 3.5443 -1.6654 50 1 9.8205 0.9992 -0.6917 51 1 8.6320 1.9089 0.2787 52 1 6.9401 1.6347 -1.4412 53 1 7.5943 0.0438 -1.0245 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506975579.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:23 Heat of formation + Delta-G solvation = -130.424696 kcal Electronic energy + Delta-G solvation = -31959.576269 eV Core-core repulsion = 27830.958371 eV Total energy + Delta-G solvation = -4128.617898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.55220 -39.81306 -38.95191 -37.21941 -36.92793 -35.85416 -34.08697 -33.34883 -30.94673 -30.71838 -29.92863 -29.16769 -27.85116 -25.03051 -24.82490 -24.18062 -23.13478 -23.10270 -22.07410 -21.61103 -19.71344 -18.85202 -18.63434 -17.71238 -17.46475 -17.11420 -16.94684 -16.64687 -16.26583 -15.99415 -15.91920 -15.49292 -15.36589 -15.23014 -15.05483 -14.76249 -14.47341 -14.16934 -13.96356 -13.88899 -13.61693 -13.29082 -13.14586 -12.95921 -12.88361 -12.71931 -12.67661 -12.62688 -12.52502 -12.51365 -12.20164 -12.11415 -12.04132 -11.84947 -11.70951 -11.69432 -11.46136 -11.11121 -10.69196 -10.58802 -10.58162 -10.34974 -10.15765 -8.69473 -7.77389 -5.22555 1.40421 1.43928 1.49736 1.54815 2.07797 2.51962 2.85515 2.88486 3.27002 3.36129 3.37209 3.72046 3.77497 3.91642 3.97012 3.99425 4.04684 4.18101 4.20456 4.21265 4.32041 4.36502 4.41820 4.52797 4.53169 4.58851 4.62803 4.68134 4.79349 4.79790 4.85544 4.87329 4.90152 4.90494 4.92467 4.93619 4.97020 5.10553 5.13122 5.20599 5.21559 5.31750 5.36524 5.41037 5.46153 5.72561 5.77760 5.79675 6.38699 6.45489 6.52431 7.14249 7.22970 7.95912 8.37157 9.25987 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.012109 B = 0.003468 C = 0.003003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2311.812364 B = 8073.036740 C = 9322.310536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.175 3.825 2 N -0.615 5.615 3 C -0.224 4.224 4 H 0.067 0.933 5 C -0.057 4.057 6 N -0.943 5.943 7 Si 0.950 3.050 8 H -0.294 1.294 9 H -0.293 1.293 10 H -0.276 1.276 11 C 0.143 3.857 12 C 0.053 3.947 13 O -0.392 6.392 14 C 0.053 3.947 15 C 0.125 3.875 16 N -0.706 5.706 17 C 0.506 3.494 18 O -0.586 6.586 19 C -0.078 4.078 20 C -0.139 4.139 21 C 0.037 3.963 22 O -0.398 6.398 23 C 0.085 3.915 24 H 0.084 0.916 25 C -0.125 4.125 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.105 4.105 29 H 0.006 0.994 30 H 0.008 0.992 31 H 0.033 0.967 32 H 0.244 0.756 33 H 0.074 0.926 34 H 0.049 0.951 35 H 0.034 0.966 36 H 0.074 0.926 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.040 0.960 40 H 0.089 0.911 41 H 0.415 0.585 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.084 0.916 47 H 0.063 0.937 48 H 0.087 0.913 49 H 0.043 0.957 50 H 0.091 0.909 51 H 0.076 0.924 52 H 0.040 0.960 53 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.660 -12.177 -6.490 24.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.338 5.338 3 C -0.354 4.354 4 H 0.084 0.916 5 C -0.251 4.251 6 N -0.592 5.592 7 Si 0.780 3.220 8 H -0.221 1.221 9 H -0.220 1.220 10 H -0.202 1.202 11 C 0.018 3.982 12 C -0.026 4.026 13 O -0.312 6.312 14 C -0.024 4.024 15 C 0.001 3.999 16 N -0.357 5.357 17 C 0.293 3.707 18 O -0.467 6.467 19 C -0.082 4.082 20 C -0.177 4.177 21 C -0.039 4.039 22 O -0.317 6.317 23 C 0.027 3.973 24 H 0.102 0.898 25 C -0.163 4.163 26 C -0.160 4.160 27 C -0.149 4.149 28 C -0.142 4.142 29 H 0.024 0.976 30 H 0.027 0.973 31 H 0.052 0.948 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.252 0.748 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.103 0.897 45 H 0.127 0.873 46 H 0.103 0.897 47 H 0.082 0.918 48 H 0.105 0.895 49 H 0.062 0.938 50 H 0.109 0.891 51 H 0.095 0.905 52 H 0.059 0.941 53 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 19.534 -11.300 -7.184 23.683 hybrid contribution -0.650 1.111 -0.098 1.291 sum 18.884 -10.189 -7.282 22.659 Atomic orbital electron populations 1.20539 0.83101 0.95745 0.97606 1.44086 1.01852 1.01914 1.85937 1.19348 0.97915 0.86444 1.31742 0.91563 1.25563 0.98886 1.00955 0.99683 1.70186 1.20986 1.27022 1.41006 0.85590 0.77991 0.81289 0.77088 1.22107 1.21956 1.20162 1.21047 0.96159 0.87448 0.93585 1.23267 0.92349 0.91660 0.95298 1.88085 1.67555 1.51008 1.24517 1.22722 0.98021 0.97368 0.84269 1.21336 0.82941 0.99221 0.96419 1.45771 1.13085 1.37865 1.38980 1.21386 0.87063 0.79471 0.82783 1.90635 1.82451 1.39852 1.33752 1.20773 0.91881 0.98929 0.96582 1.23409 0.96973 0.93129 1.04195 1.23933 0.96057 0.87402 0.96546 1.89558 1.69743 1.31087 1.41346 1.22271 0.90643 0.92214 0.92162 0.89841 1.21484 0.98961 0.99897 0.95942 1.21505 1.00649 0.98158 0.95703 1.21532 0.98211 0.96590 0.98526 1.20788 0.99275 1.03169 0.91015 0.97580 0.97328 0.94844 0.94657 0.90775 0.93214 0.94760 0.90799 0.91746 0.90071 0.94156 0.89303 0.74812 0.90354 0.85905 0.89748 0.87306 0.89719 0.91840 0.89492 0.93820 0.89064 0.90520 0.94136 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.62 8.98 127.77 1.15 9.77 16 2 N -0.61 -30.37 2.90 -726.94 -2.11 -32.48 16 3 C -0.22 -12.45 9.21 84.03 0.77 -11.68 16 4 H 0.07 3.71 7.58 -2.91 -0.02 3.69 16 5 C -0.06 -3.31 5.10 84.86 0.43 -2.88 16 6 N -0.94 -57.29 10.71 21.65 0.23 -57.05 16 7 Si 0.95 47.95 29.57 68.60 2.03 49.98 16 8 H -0.29 -15.06 7.11 99.48 0.71 -14.35 16 9 H -0.29 -14.74 7.11 99.48 0.71 -14.03 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 C 0.14 5.32 6.07 86.38 0.52 5.85 16 12 C 0.05 1.58 6.28 71.98 0.45 2.03 16 13 O -0.39 -12.93 9.52 -148.98 -1.42 -14.35 16 14 C 0.05 1.28 6.07 71.98 0.44 1.72 16 15 C 0.12 3.42 6.06 86.38 0.52 3.95 16 16 N -0.71 -17.89 5.08 -463.06 -2.35 -20.24 16 17 C 0.51 14.80 5.43 87.66 0.48 15.28 16 18 O -0.59 -22.58 14.83 -3.03 -0.04 -22.62 16 19 C -0.08 -1.69 0.76 -54.19 -0.04 -1.74 16 20 C -0.14 -2.04 6.01 31.81 0.19 -1.85 16 21 C 0.04 0.55 7.42 72.79 0.54 1.09 16 22 O -0.40 -9.84 11.26 -148.98 -1.68 -11.52 16 23 C 0.08 2.12 3.10 29.60 0.09 2.21 16 24 H 0.08 2.76 6.01 -2.39 -0.01 2.74 16 25 C -0.13 -2.47 5.36 29.88 0.16 -2.31 16 26 C -0.12 -2.29 5.97 30.48 0.18 -2.11 16 27 C -0.11 -1.81 6.06 30.58 0.19 -1.62 16 28 C -0.10 -2.10 4.31 29.29 0.13 -1.97 16 29 H 0.01 0.32 7.34 -2.38 -0.02 0.30 16 30 H 0.01 0.44 7.34 -2.39 -0.02 0.42 16 31 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 32 H 0.24 14.56 8.31 -92.71 -0.77 13.79 16 33 H 0.07 2.40 8.07 -2.38 -0.02 2.38 16 34 H 0.05 1.88 8.04 -2.39 -0.02 1.86 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.59 8.14 -2.39 -0.02 1.58 16 37 H 0.06 1.51 8.14 -2.38 -0.02 1.49 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 39 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 40 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 41 H 0.41 8.43 7.98 -92.71 -0.74 7.69 16 42 H 0.08 1.24 7.45 -2.38 -0.02 1.22 16 43 H 0.12 1.01 7.55 -2.39 -0.02 0.99 16 44 H 0.08 0.93 7.42 -2.39 -0.02 0.91 16 45 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 46 H 0.08 1.36 7.07 -2.39 -0.02 1.35 16 47 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 48 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.04 1.02 8.10 -2.39 -0.02 1.00 16 50 H 0.09 1.04 8.11 -2.39 -0.02 1.02 16 51 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.04 1.10 7.57 -2.39 -0.02 1.08 16 53 H 0.10 1.51 7.50 -2.39 -0.02 1.49 16 Total: -1.00 -77.22 408.26 1.00 -76.22 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: 0.14 Total: 16.33 kcal Atomic # 6 Polarization: 9.54 SS G_CDS: 6.20 Total: 15.74 kcal Atomic # 7 Polarization: -105.55 SS G_CDS: -4.23 Total: -109.78 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -3.14 Total: -48.49 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 2.03 Total: 49.98 kcal Total: -77.22 1.00 -76.22 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506975579.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.209 kcal (2) G-P(sol) polarization free energy of solvation -77.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds