Wall clock time and date at job start Sat Apr 11 2020 06:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 114.00172 * 2 1 4 4 H 1.09002 * 109.52258 * 329.87151 * 3 2 1 5 5 C 1.53096 * 109.52388 * 89.99751 * 3 2 1 6 6 O 1.42900 * 109.41624 * 62.35817 * 5 3 2 7 7 C 1.42905 * 114.09687 * 61.15982 * 6 5 3 8 8 C 1.53096 * 109.41308 * 298.84159 * 7 6 5 9 9 C 1.53175 * 109.21377 * 57.57874 * 8 7 6 10 10 H 1.09004 * 109.54889 * 62.91724 * 9 8 7 11 11 C 1.53006 * 109.54231 * 183.18353 * 9 8 7 12 12 C 1.50702 * 109.47031 * 294.99545 * 11 9 8 13 13 O 1.21289 * 119.99779 * 0.02562 * 12 11 9 14 14 N 1.34770 * 120.00167 * 179.97438 * 12 11 9 15 15 C 1.46502 * 120.00338 * 174.55649 * 14 12 11 16 16 C 1.52997 * 110.43534 * 303.00891 * 15 14 12 17 17 N 1.46500 * 109.47097 * 307.76108 * 16 15 14 18 18 C 1.36941 * 120.00316 * 174.95670 * 17 16 15 19 19 H 1.07994 * 119.99402 * 0.02562 * 18 17 16 20 20 C 1.38807 * 120.00209 * 179.97438 * 18 17 16 21 21 N 1.31627 * 119.99886 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 120.00018 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47497 * 90.00446 * 22 20 18 24 24 H 1.48507 * 109.47312 * 210.00452 * 22 20 18 25 25 H 1.48507 * 109.47159 * 330.00338 * 22 20 18 26 26 C 1.54883 * 110.48701 * 180.46461 * 15 14 12 27 27 C 1.55237 * 102.58797 * 279.18945 * 26 15 14 28 28 C 1.54269 * 104.23318 * 322.08590 * 27 26 15 29 29 C 1.53873 * 106.59532 * 23.60791 * 28 27 26 30 30 H 1.09006 * 109.46632 * 59.99920 * 1 2 3 31 31 H 1.08999 * 109.47399 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47147 * 300.00455 * 1 2 3 33 33 H 1.09008 * 109.47505 * 302.37376 * 5 3 2 34 34 H 1.08999 * 109.48309 * 182.34435 * 5 3 2 35 35 H 1.08998 * 109.48063 * 178.86260 * 7 6 5 36 36 H 1.08998 * 109.48197 * 58.82059 * 7 6 5 37 37 H 1.09002 * 109.51874 * 177.51375 * 8 7 6 38 38 H 1.08995 * 109.52353 * 297.63940 * 8 7 6 39 39 H 1.08997 * 109.47103 * 54.99669 * 11 9 8 40 40 H 1.09006 * 109.47016 * 175.00159 * 11 9 8 41 41 H 0.97002 * 119.99692 * 354.56571 * 14 12 11 42 42 H 1.08997 * 109.47452 * 67.75665 * 16 15 14 43 43 H 1.08997 * 109.47041 * 187.76075 * 16 15 14 44 44 H 0.97002 * 119.99923 * 354.95490 * 17 16 15 45 45 H 0.97000 * 119.99374 * 179.97438 * 21 20 18 46 46 H 1.08999 * 110.75992 * 37.58260 * 26 15 14 47 47 H 1.09005 * 110.75776 * 160.95340 * 26 15 14 48 48 H 1.09002 * 110.46951 * 203.39438 * 27 26 15 49 49 H 1.08995 * 110.58383 * 80.83309 * 27 26 15 50 50 H 1.09001 * 110.03300 * 264.33068 * 28 27 26 51 51 H 1.08999 * 110.07345 * 142.92101 * 28 27 26 52 52 H 1.09000 * 110.03353 * 240.71393 * 29 28 27 53 53 H 1.09002 * 110.06979 * 119.31177 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3467 1.9996 -0.5157 5 6 2.2184 1.7728 1.4429 6 8 3.1339 0.8939 2.0997 7 6 4.4315 0.8508 1.5026 8 6 4.3124 0.3463 0.0621 9 6 3.3637 1.2631 -0.7162 10 1 3.7831 2.2683 -0.7612 11 6 3.1769 0.7207 -2.1347 12 6 4.4884 0.7855 -2.8741 13 8 5.4755 1.2221 -2.3208 14 7 4.5648 0.3574 -4.1497 15 6 5.8069 0.5297 -4.9072 16 6 6.2085 2.0054 -4.9460 17 7 5.0765 2.8074 -5.4168 18 6 5.1663 4.1737 -5.4362 19 1 6.0718 4.6600 -5.1048 20 6 4.0939 4.9335 -5.8827 21 7 2.9904 4.3407 -6.2870 22 14 4.2167 6.7972 -5.9098 23 1 4.7552 7.2389 -7.2213 24 1 2.8685 7.3852 -5.7049 25 1 5.1240 7.2494 -4.8245 26 6 5.6473 -0.0268 -6.3438 27 6 5.8549 -1.5518 -6.1409 28 6 6.9674 -1.6448 -5.0762 29 6 6.9368 -0.3214 -4.2918 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.2638 1.7631 1.9693 34 1 2.6230 2.7849 1.4424 35 1 5.0714 0.1767 2.0720 36 1 4.8651 1.8508 1.5028 37 1 5.2952 0.3546 -0.4092 38 1 3.9176 -0.6696 0.0634 39 1 2.8378 -0.3141 -2.0862 40 1 2.4342 1.3223 -2.6588 41 1 3.7972 -0.0647 -4.5663 42 1 6.4932 2.3310 -3.9456 43 1 7.0522 2.1346 -5.6240 44 1 4.2633 2.3705 -5.7148 45 1 2.2409 4.8717 -6.5987 46 1 4.6497 0.1818 -6.7303 47 1 6.4120 0.3829 -7.0039 48 1 6.1770 -2.0197 -7.0711 49 1 4.9392 -2.0182 -5.7775 50 1 7.9366 -1.7704 -5.5589 51 1 6.7737 -2.4814 -4.4049 52 1 7.8912 0.1952 -4.3938 53 1 6.7280 -0.5149 -3.2397 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568001089.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:13:56 Heat of formation + Delta-G solvation = -150.952087 kcal Electronic energy + Delta-G solvation = -32329.326111 eV Core-core repulsion = 28199.818079 eV Total energy + Delta-G solvation = -4129.508032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.55266 -40.66473 -38.75301 -37.91209 -36.18344 -35.08021 -34.33383 -33.00692 -31.47589 -30.38100 -29.66037 -29.05829 -27.42455 -26.31185 -24.72072 -24.35185 -23.95440 -21.84311 -21.32077 -20.82071 -20.29085 -19.11854 -18.10051 -17.56998 -17.42575 -17.19630 -16.68763 -16.58861 -16.36300 -16.13518 -15.97207 -15.65763 -15.57822 -15.06926 -14.98303 -14.75648 -14.44689 -14.26618 -13.96811 -13.75554 -13.69997 -13.31842 -13.19404 -13.10341 -12.82484 -12.71718 -12.37608 -12.30076 -12.22867 -12.18586 -12.07468 -11.99105 -11.91504 -11.76828 -11.68768 -11.58774 -11.29367 -11.26212 -11.00016 -10.99277 -10.44435 -10.04485 -9.76985 -8.93997 -7.94986 -5.20650 1.44153 1.44723 1.53321 1.86631 2.37611 2.55135 2.72097 3.06470 3.37572 3.53604 3.65388 3.71952 3.73004 3.83059 3.90650 3.96701 4.18723 4.21011 4.32384 4.38813 4.43563 4.45415 4.50290 4.53426 4.55971 4.57680 4.63358 4.65429 4.70798 4.76667 4.84389 4.87288 4.89381 4.92245 4.94613 4.96706 5.05951 5.10272 5.14624 5.18929 5.21745 5.31902 5.36541 5.37703 5.46782 5.53385 5.84776 6.11228 6.27933 6.37659 6.77621 7.35429 7.50289 8.10136 8.39435 9.27848 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.007987 B = 0.004285 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3504.691555 B = 6533.512468 C = 8638.425435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.062 3.938 4 H 0.078 0.922 5 C 0.039 3.961 6 O -0.389 6.389 7 C 0.062 3.938 8 C -0.138 4.138 9 C -0.065 4.065 10 H 0.067 0.933 11 C -0.121 4.121 12 C 0.518 3.482 13 O -0.566 6.566 14 N -0.704 5.704 15 C 0.172 3.828 16 C 0.148 3.852 17 N -0.727 5.727 18 C -0.241 4.241 19 H 0.060 0.940 20 C -0.066 4.066 21 N -0.962 5.962 22 Si 0.965 3.035 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.279 1.279 26 C -0.117 4.117 27 C -0.113 4.113 28 C -0.114 4.114 29 C -0.118 4.118 30 H 0.046 0.954 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.112 0.888 40 H 0.088 0.912 41 H 0.405 0.595 42 H 0.017 0.983 43 H 0.015 0.985 44 H 0.378 0.622 45 H 0.251 0.749 46 H 0.066 0.934 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.074 0.926 50 H 0.073 0.927 51 H 0.071 0.929 52 H 0.061 0.939 53 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.225 -14.792 9.920 17.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.004 3.996 4 H 0.096 0.904 5 C -0.038 4.038 6 O -0.308 6.308 7 C -0.015 4.015 8 C -0.175 4.175 9 C -0.084 4.084 10 H 0.085 0.915 11 C -0.161 4.161 12 C 0.306 3.694 13 O -0.445 6.445 14 N -0.355 5.355 15 C 0.086 3.914 16 C 0.020 3.980 17 N -0.370 5.370 18 C -0.373 4.373 19 H 0.078 0.922 20 C -0.258 4.258 21 N -0.612 5.612 22 Si 0.794 3.206 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.204 1.204 26 C -0.155 4.155 27 C -0.150 4.150 28 C -0.152 4.152 29 C -0.157 4.157 30 H 0.064 0.936 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.128 0.872 34 H 0.081 0.919 35 H 0.123 0.877 36 H 0.065 0.935 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.106 0.894 41 H 0.241 0.759 42 H 0.035 0.965 43 H 0.033 0.967 44 H 0.210 0.790 45 H 0.060 0.940 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.101 0.899 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.090 0.910 52 H 0.080 0.920 53 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.368 -14.589 10.497 18.025 hybrid contribution -0.706 1.668 -0.759 1.964 sum -2.074 -12.920 9.738 16.311 Atomic orbital electron populations 1.22977 0.80058 1.03763 1.00539 1.87927 1.20712 1.26725 1.95045 1.22786 0.94579 0.86012 0.96215 0.90410 1.23171 0.94684 0.93116 0.92854 1.87885 1.22663 1.66057 1.54174 1.22643 0.84448 1.00894 0.93503 1.22116 1.00429 0.99302 0.95661 1.20946 0.94498 0.99807 0.93195 0.91484 1.21550 0.94646 1.04696 0.95199 1.20835 0.90809 0.75873 0.81851 1.90587 1.39170 1.46730 1.68036 1.45781 1.15476 1.61616 1.12621 1.21239 0.85015 0.93071 0.92103 1.21087 0.90183 0.90602 0.96083 1.42237 1.14947 1.02256 1.77532 1.19500 0.98750 0.84519 1.34580 0.92187 1.25352 0.96128 1.01652 1.02713 1.69777 1.04995 1.35191 1.51285 0.85276 0.76448 0.81170 0.77684 1.21315 1.21764 1.20446 1.22744 1.02364 0.96651 0.93740 1.22407 0.99127 0.94080 0.99434 1.22094 0.99643 0.96088 0.97379 1.22360 0.97286 0.96156 0.99878 0.93563 0.88451 0.93288 0.87235 0.91868 0.87677 0.93489 0.90602 0.91273 0.86969 0.89392 0.75928 0.96463 0.96742 0.78957 0.94018 0.91507 0.90713 0.89886 0.90731 0.90780 0.91029 0.92023 0.92139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 10.82 113.37 1.23 1.60 16 2 O -0.39 -8.86 9.07 -141.88 -1.29 -10.15 16 3 C 0.06 1.46 2.43 30.69 0.07 1.53 16 4 H 0.08 1.70 7.79 -2.39 -0.02 1.68 16 5 C 0.04 0.86 6.49 72.01 0.47 1.32 16 6 O -0.39 -10.11 10.70 -141.88 -1.52 -11.63 16 7 C 0.06 1.52 6.84 72.01 0.49 2.01 16 8 C -0.14 -3.71 4.96 30.68 0.15 -3.56 16 9 C -0.07 -1.82 1.76 -10.67 -0.02 -1.84 16 10 H 0.07 2.20 7.97 -2.38 -0.02 2.18 16 11 C -0.12 -3.39 4.94 29.85 0.15 -3.25 16 12 C 0.52 17.56 6.81 87.66 0.60 18.16 16 13 O -0.57 -22.65 10.94 -3.06 -0.03 -22.68 16 14 N -0.70 -21.80 4.54 -418.08 -1.90 -23.70 16 15 C 0.17 5.62 0.39 4.67 0.00 5.62 16 16 C 0.15 6.45 4.72 86.38 0.41 6.86 16 17 N -0.73 -37.29 5.30 -343.47 -1.82 -39.11 16 18 C -0.24 -13.91 9.99 84.03 0.84 -13.07 16 19 H 0.06 3.47 7.83 -2.91 -0.02 3.45 16 20 C -0.07 -3.79 5.50 84.86 0.47 -3.33 16 21 N -0.96 -57.47 13.06 21.65 0.28 -57.19 16 22 Si 0.96 46.85 29.55 68.60 2.03 48.88 16 23 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 C -0.12 -3.26 5.67 32.01 0.18 -3.08 16 27 C -0.11 -2.29 6.80 31.79 0.22 -2.07 16 28 C -0.11 -2.41 6.80 31.32 0.21 -2.19 16 29 C -0.12 -3.37 5.68 31.32 0.18 -3.19 16 30 H 0.05 0.72 8.09 -2.38 -0.02 0.70 16 31 H 0.10 1.32 8.14 -2.39 -0.02 1.31 16 32 H 0.05 0.70 7.83 -2.39 -0.02 0.68 16 33 H 0.11 1.98 7.83 -2.38 -0.02 1.96 16 34 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.08 2.34 6.03 -2.39 -0.01 2.32 16 38 H 0.07 1.86 7.84 -2.39 -0.02 1.84 16 39 H 0.11 2.69 7.77 -2.39 -0.02 2.67 16 40 H 0.09 2.56 8.14 -2.38 -0.02 2.54 16 41 H 0.41 10.63 8.50 -92.71 -0.79 9.84 16 42 H 0.02 0.85 6.49 -2.39 -0.02 0.84 16 43 H 0.01 0.65 8.02 -2.39 -0.02 0.63 16 44 H 0.38 19.77 7.27 -92.71 -0.67 19.10 16 45 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 46 H 0.07 1.97 8.10 -2.39 -0.02 1.95 16 47 H 0.07 2.19 7.97 -2.38 -0.02 2.17 16 48 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 50 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 52 H 0.06 1.83 7.84 -2.39 -0.02 1.81 16 53 H 0.06 1.90 6.63 -2.39 -0.02 1.88 16 Total: -1.00 -70.20 406.46 0.83 -69.37 By element: Atomic # 1 Polarization: 45.25 SS G_CDS: -0.56 Total: 44.69 kcal Atomic # 6 Polarization: -4.12 SS G_CDS: 5.64 Total: 1.52 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -3.44 Total: -120.00 kcal Atomic # 8 Polarization: -41.62 SS G_CDS: -2.84 Total: -44.46 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -70.20 0.83 -69.37 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568001089.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.586 kcal (2) G-P(sol) polarization free energy of solvation -70.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds