Wall clock time and date at job start Sat Apr 11 2020 06:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42903 * 114.00406 * 2 1 4 4 H 1.09000 * 109.56856 * 30.15465 * 3 2 1 5 5 C 1.53086 * 109.51969 * 270.00232 * 3 2 1 6 6 O 1.42904 * 109.42791 * 297.70422 * 5 3 2 7 7 C 1.42905 * 114.09723 * 298.84240 * 6 5 3 8 8 C 1.53089 * 109.41449 * 61.15354 * 7 6 5 9 9 C 1.53174 * 109.16485 * 302.38811 * 8 7 6 10 10 H 1.09000 * 109.54737 * 297.03230 * 9 8 7 11 11 C 1.53000 * 109.54480 * 176.85061 * 9 8 7 12 12 C 1.50692 * 109.47101 * 65.70493 * 11 9 8 13 13 O 1.21283 * 120.00122 * 5.20021 * 12 11 9 14 14 N 1.34783 * 120.00192 * 185.20466 * 12 11 9 15 15 C 1.46494 * 120.00193 * 184.98131 * 14 12 11 16 16 C 1.53002 * 110.43150 * 58.82576 * 15 14 12 17 17 N 1.46497 * 109.47278 * 59.88936 * 16 15 14 18 18 C 1.36935 * 119.99519 * 184.75835 * 17 16 15 19 19 H 1.07994 * 120.00591 * 4.91359 * 18 17 16 20 20 C 1.38815 * 119.99823 * 184.91005 * 18 17 16 21 21 N 1.31616 * 120.00245 * 184.03793 * 20 18 17 22 22 Si 1.86801 * 119.99909 * 4.04424 * 20 18 17 23 23 H 1.48498 * 109.47638 * 92.73654 * 22 20 18 24 24 H 1.48503 * 109.46890 * 212.74191 * 22 20 18 25 25 H 1.48499 * 109.46890 * 332.73528 * 22 20 18 26 26 C 1.54883 * 110.48879 * 296.13866 * 15 14 12 27 27 C 1.54887 * 102.75072 * 279.26454 * 26 15 14 28 28 C 1.54270 * 104.19679 * 322.05656 * 27 26 15 29 29 C 1.53879 * 106.59437 * 23.60982 * 28 27 26 30 30 H 1.08996 * 109.46896 * 59.99750 * 1 2 3 31 31 H 1.09001 * 109.47268 * 180.02562 * 1 2 3 32 32 H 1.09008 * 109.46891 * 300.00276 * 1 2 3 33 33 H 1.09005 * 109.48124 * 177.71864 * 5 3 2 34 34 H 1.09003 * 109.48303 * 57.69712 * 5 3 2 35 35 H 1.09000 * 109.48024 * 181.14115 * 7 6 5 36 36 H 1.09002 * 109.47560 * 301.15645 * 7 6 5 37 37 H 1.08997 * 109.52487 * 62.30352 * 8 7 6 38 38 H 1.09007 * 109.52080 * 182.42266 * 8 7 6 39 39 H 1.09001 * 109.47328 * 185.70532 * 11 9 8 40 40 H 1.08999 * 109.46963 * 305.69932 * 11 9 8 41 41 H 0.97003 * 119.99178 * 4.98331 * 14 12 11 42 42 H 1.08999 * 109.46737 * 179.89249 * 16 15 14 43 43 H 1.09006 * 109.46697 * 299.88607 * 16 15 14 44 44 H 0.96987 * 120.00130 * 4.76248 * 17 16 15 45 45 H 0.97003 * 120.00186 * 180.02562 * 21 20 18 46 46 H 1.09009 * 110.75763 * 37.57633 * 26 15 14 47 47 H 1.08995 * 110.75766 * 160.94964 * 26 15 14 48 48 H 1.08995 * 110.49307 * 203.37772 * 27 26 15 49 49 H 1.09002 * 110.60124 * 80.78962 * 27 26 15 50 50 H 1.08997 * 110.03168 * 264.32781 * 28 27 26 51 51 H 1.08997 * 110.07525 * 142.91400 * 28 27 26 52 52 H 1.09000 * 110.03136 * 240.71793 * 29 28 27 53 53 H 1.08996 * 110.07232 * 119.30925 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3476 2.0002 0.5159 5 6 2.2183 1.7727 -1.4429 6 8 3.1327 0.8930 -2.1003 7 6 4.4305 0.8484 -1.5038 8 6 4.3116 0.3438 -0.0634 9 6 3.3648 1.2627 0.7147 10 1 3.7864 2.2668 0.7599 11 6 3.1778 0.7218 2.1336 12 6 4.4857 0.8011 2.8778 13 8 5.4461 1.3322 2.3614 14 7 4.5885 0.2819 4.1174 15 6 5.8250 0.4544 4.8837 16 6 6.1334 1.9411 5.0724 17 7 5.0301 2.5810 5.7932 18 6 5.0377 3.9356 5.9935 19 1 5.8147 4.5424 5.5527 20 6 4.0464 4.5289 6.7631 21 7 4.0073 5.8384 6.8904 22 14 2.7679 3.4689 7.6183 23 1 3.2244 3.1580 8.9967 24 1 1.4773 4.2010 7.6774 25 1 2.5857 2.2050 6.8603 26 6 7.0039 -0.2615 4.1790 27 6 6.8145 -1.7371 4.6100 28 6 6.3452 -1.6456 6.0767 29 6 5.7160 -0.2521 6.2507 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 2.6241 2.7845 -1.4424 34 1 1.2637 1.7642 -1.9690 35 1 5.0695 0.1739 -2.0738 36 1 4.8653 1.8480 -1.5044 37 1 3.9148 -0.6714 -0.0647 38 1 5.2949 0.3499 0.4071 39 1 2.4273 1.3171 2.6535 40 1 2.8490 -0.3164 2.0863 41 1 3.8435 -0.2061 4.5019 42 1 7.0541 2.0513 5.6453 43 1 6.2533 2.4139 4.0976 44 1 4.2945 2.0453 6.1285 45 1 3.3149 6.2529 7.4286 46 1 6.9246 -0.1621 3.0963 47 1 7.9588 0.1252 4.5346 48 1 7.7586 -2.2779 4.5447 49 1 6.0552 -2.2216 3.9961 50 1 7.1960 -1.7576 6.7487 51 1 5.6039 -2.4181 6.2813 52 1 6.2616 0.3121 7.0071 53 1 4.6693 -0.3477 6.5393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001568001092.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:14:07 Heat of formation + Delta-G solvation = -149.293958 kcal Electronic energy + Delta-G solvation = -32288.280670 eV Core-core repulsion = 28158.844539 eV Total energy + Delta-G solvation = -4129.436130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.60630 -40.69622 -38.81974 -37.91559 -36.33487 -35.11290 -34.41239 -33.37763 -31.48911 -30.59455 -29.66820 -29.22438 -27.42606 -26.31156 -24.72480 -24.36049 -23.81247 -22.09461 -21.08776 -20.70703 -20.54880 -19.66070 -18.12269 -17.58877 -17.42501 -17.10377 -16.73883 -16.56266 -16.48719 -16.23770 -16.06530 -15.76452 -15.62753 -15.12354 -14.86295 -14.77059 -14.52370 -14.33345 -14.00057 -13.79699 -13.77506 -13.65720 -13.36449 -13.12567 -12.87611 -12.70023 -12.42611 -12.26861 -12.23333 -12.15834 -12.07010 -11.98694 -11.93539 -11.83207 -11.66565 -11.64063 -11.29715 -11.27868 -11.04893 -11.00353 -10.50543 -10.06408 -9.83884 -9.27276 -8.03632 -5.36886 1.31368 1.40037 1.46420 1.81393 2.30817 2.46535 2.71887 3.06085 3.26806 3.42193 3.60686 3.68885 3.70426 3.80995 3.83072 3.90801 4.02031 4.16338 4.31570 4.36871 4.41363 4.45408 4.49572 4.53239 4.53497 4.55431 4.56973 4.64367 4.68684 4.75834 4.80903 4.83653 4.88083 4.91109 4.92613 4.95269 5.04960 5.08692 5.13953 5.16436 5.17962 5.29077 5.33281 5.37391 5.50531 5.72713 5.80219 6.11048 6.19249 6.37580 6.72033 7.07101 7.44737 7.81145 8.06591 9.18607 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.009350 B = 0.003987 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2993.910999 B = 7021.135559 C = 8543.433205 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.385 6.385 3 C 0.062 3.938 4 H 0.082 0.918 5 C 0.037 3.963 6 O -0.390 6.390 7 C 0.061 3.939 8 C -0.136 4.136 9 C -0.068 4.068 10 H 0.071 0.929 11 C -0.124 4.124 12 C 0.515 3.485 13 O -0.565 6.565 14 N -0.707 5.707 15 C 0.171 3.829 16 C 0.151 3.849 17 N -0.744 5.744 18 C -0.234 4.234 19 H 0.041 0.959 20 C -0.064 4.064 21 N -0.986 5.986 22 Si 0.962 3.038 23 H -0.278 1.278 24 H -0.295 1.295 25 H -0.245 1.245 26 C -0.123 4.123 27 C -0.111 4.111 28 C -0.114 4.114 29 C -0.125 4.125 30 H 0.047 0.953 31 H 0.096 0.904 32 H 0.048 0.952 33 H 0.063 0.937 34 H 0.108 0.892 35 H 0.104 0.896 36 H 0.047 0.953 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.095 0.905 40 H 0.114 0.886 41 H 0.408 0.592 42 H 0.021 0.979 43 H 0.021 0.979 44 H 0.368 0.632 45 H 0.258 0.742 46 H 0.065 0.935 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.082 0.918 52 H 0.069 0.931 53 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.203 -20.460 -12.070 24.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.304 6.304 3 C 0.004 3.996 4 H 0.100 0.900 5 C -0.040 4.040 6 O -0.309 6.309 7 C -0.016 4.016 8 C -0.174 4.174 9 C -0.087 4.087 10 H 0.089 0.911 11 C -0.163 4.163 12 C 0.303 3.697 13 O -0.444 6.444 14 N -0.359 5.359 15 C 0.084 3.916 16 C 0.023 3.977 17 N -0.390 5.390 18 C -0.365 4.365 19 H 0.060 0.940 20 C -0.255 4.255 21 N -0.637 5.637 22 Si 0.789 3.211 23 H -0.205 1.205 24 H -0.222 1.222 25 H -0.169 1.169 26 C -0.162 4.162 27 C -0.149 4.149 28 C -0.151 4.151 29 C -0.163 4.163 30 H 0.066 0.934 31 H 0.114 0.886 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.126 0.874 35 H 0.122 0.878 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.244 0.756 42 H 0.039 0.961 43 H 0.039 0.961 44 H 0.202 0.798 45 H 0.067 0.933 46 H 0.084 0.916 47 H 0.088 0.912 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.091 0.909 51 H 0.100 0.900 52 H 0.088 0.912 53 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -4.366 -20.154 -12.598 24.165 hybrid contribution -1.015 0.828 1.098 1.709 sum -5.381 -19.326 -11.500 23.124 Atomic orbital electron populations 1.22976 0.80058 1.03733 1.00576 1.87931 1.20691 1.26748 1.95041 1.22797 0.94601 0.86062 0.96152 0.90050 1.23185 0.94663 0.93131 0.92998 1.87893 1.22700 1.66037 1.54228 1.22641 0.84451 1.00915 0.93572 1.22077 1.00179 0.99469 0.95648 1.20990 0.94482 1.00049 0.93218 0.91070 1.21604 0.94537 1.05107 0.95099 1.20954 0.90603 0.76689 0.81496 1.90620 1.40802 1.44726 1.68268 1.45875 1.17137 1.56932 1.15952 1.21267 0.85575 0.92823 0.91954 1.21067 0.89989 0.92166 0.94449 1.42477 1.24248 1.03813 1.68459 1.18968 1.08961 0.84021 1.24580 0.94042 1.25566 1.01642 0.96782 1.01540 1.69917 1.37431 1.10390 1.45922 0.85310 0.77952 0.78851 0.79022 1.20468 1.22178 1.16937 1.22737 0.96735 0.96113 1.00567 1.22285 1.01768 0.94787 0.96033 1.22114 1.00948 0.95298 0.96788 1.22432 1.02256 0.96865 0.94707 0.93413 0.88556 0.93360 0.91837 0.87357 0.87790 0.93469 0.91093 0.90953 0.88675 0.86744 0.75576 0.96149 0.96072 0.79754 0.93332 0.91625 0.91200 0.90369 0.91337 0.90863 0.89979 0.91248 0.90639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 10.82 113.37 1.23 1.54 16 2 O -0.39 -7.81 9.08 -141.83 -1.29 -9.10 16 3 C 0.06 1.27 2.43 30.69 0.07 1.34 16 4 H 0.08 1.48 7.79 -2.39 -0.02 1.46 16 5 C 0.04 0.74 6.48 72.01 0.47 1.21 16 6 O -0.39 -9.42 10.70 -141.83 -1.52 -10.93 16 7 C 0.06 1.37 6.84 72.01 0.49 1.87 16 8 C -0.14 -3.29 4.98 30.68 0.15 -3.14 16 9 C -0.07 -1.67 1.75 -10.67 -0.02 -1.69 16 10 H 0.07 2.07 7.86 -2.39 -0.02 2.05 16 11 C -0.12 -2.94 4.92 29.85 0.15 -2.79 16 12 C 0.51 15.49 6.86 87.65 0.60 16.09 16 13 O -0.57 -21.00 10.88 -3.04 -0.03 -21.03 16 14 N -0.71 -19.08 4.89 -418.08 -2.04 -21.12 16 15 C 0.17 5.07 0.39 4.68 0.00 5.07 16 16 C 0.15 6.26 4.87 86.38 0.42 6.68 16 17 N -0.74 -35.35 5.08 -343.45 -1.74 -37.10 16 18 C -0.23 -13.87 10.47 84.03 0.88 -12.99 16 19 H 0.04 2.78 8.06 -2.91 -0.02 2.75 16 20 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 21 N -0.99 -64.20 13.97 21.65 0.30 -63.90 16 22 Si 0.96 44.73 27.95 68.60 1.92 46.65 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 25 H -0.24 -9.78 6.23 99.48 0.62 -9.16 16 26 C -0.12 -3.25 5.71 31.88 0.18 -3.07 16 27 C -0.11 -2.12 6.79 31.67 0.22 -1.91 16 28 C -0.11 -2.05 6.80 31.32 0.21 -1.84 16 29 C -0.12 -3.07 5.45 31.32 0.17 -2.90 16 30 H 0.05 0.58 7.83 -2.39 -0.02 0.56 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.05 0.61 8.09 -2.38 -0.02 0.59 16 33 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.11 1.76 7.83 -2.39 -0.02 1.74 16 35 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.71 7.83 -2.39 -0.02 1.69 16 38 H 0.07 2.01 6.29 -2.38 -0.01 1.99 16 39 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.11 2.25 7.79 -2.39 -0.02 2.24 16 41 H 0.41 8.60 8.28 -92.71 -0.77 7.83 16 42 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 43 H 0.02 1.02 6.35 -2.38 -0.02 1.01 16 44 H 0.37 16.06 4.99 -92.72 -0.46 15.60 16 45 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 46 H 0.07 1.98 6.35 -2.38 -0.02 1.97 16 47 H 0.07 1.89 8.06 -2.39 -0.02 1.87 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 50 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 51 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 52 H 0.07 1.95 7.83 -2.39 -0.02 1.93 16 53 H 0.07 1.71 7.76 -2.39 -0.02 1.70 16 Total: -1.00 -76.20 402.75 0.87 -75.33 By element: Atomic # 1 Polarization: 41.49 SS G_CDS: -0.42 Total: 41.08 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 5.69 Total: 0.12 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -3.49 Total: -122.12 kcal Atomic # 8 Polarization: -38.22 SS G_CDS: -2.84 Total: -41.06 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.92 Total: 46.65 kcal Total: -76.20 0.87 -75.33 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568001092.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.959 kcal (2) G-P(sol) polarization free energy of solvation -76.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds