Wall clock time and date at job start Sat Apr 11 2020 06:11:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45199 * 109.47245 * 2 1 4 4 C 1.34234 * 116.99776 * 180.02562 * 3 2 1 5 5 O 1.20819 * 120.00382 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99490 * 180.02562 * 4 3 2 7 7 C 1.53006 * 110.05700 * 301.41062 * 6 4 3 8 8 N 1.46499 * 109.46543 * 58.58808 * 7 6 4 9 9 C 1.34782 * 119.99705 * 180.02562 * 8 7 6 10 10 O 1.21584 * 120.00035 * 359.97438 * 9 8 7 11 11 N 1.34776 * 119.99776 * 180.02562 * 9 8 7 12 12 C 1.46504 * 119.99610 * 179.97438 * 11 9 8 13 13 C 1.53007 * 109.47045 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.47188 * 300.00265 * 13 12 11 15 15 C 1.53009 * 109.46818 * 59.99885 * 13 12 11 16 16 C 1.50689 * 109.47097 * 179.97438 * 13 12 11 17 17 H 1.08003 * 120.00153 * 0.02562 * 16 13 12 18 18 C 1.37877 * 119.99934 * 180.02562 * 16 13 12 19 19 N 1.31521 * 120.00149 * 359.97438 * 18 16 13 20 20 Si 1.86803 * 120.00208 * 180.02562 * 18 16 13 21 21 H 1.48500 * 109.46885 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47170 * 119.99806 * 20 18 16 23 23 H 1.48499 * 109.47476 * 239.99911 * 20 18 16 24 24 C 1.53876 * 110.03013 * 180.02562 * 6 4 3 25 25 C 1.54267 * 106.59870 * 240.71414 * 24 6 4 26 26 C 1.54891 * 104.19324 * 336.39035 * 25 24 6 27 27 C 1.54261 * 110.03593 * 62.83142 * 6 4 3 28 28 H 1.09000 * 109.46895 * 59.99942 * 1 2 3 29 29 H 1.08999 * 109.47274 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46675 * 300.00247 * 1 2 3 31 31 H 1.09006 * 109.47169 * 239.99729 * 2 1 3 32 32 H 1.09003 * 109.47385 * 120.00073 * 2 1 3 33 33 H 1.08996 * 109.47135 * 178.58676 * 7 6 4 34 34 H 1.08991 * 109.47237 * 298.59052 * 7 6 4 35 35 H 0.97001 * 120.00148 * 359.97438 * 8 7 6 36 36 H 0.97001 * 120.00077 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47007 * 299.99510 * 12 11 9 38 38 H 1.08999 * 109.47207 * 60.00072 * 12 11 9 39 39 H 1.09000 * 109.47388 * 59.99727 * 14 13 12 40 40 H 1.08995 * 109.47078 * 179.97438 * 14 13 12 41 41 H 1.09001 * 109.47111 * 300.00089 * 14 13 12 42 42 H 1.09000 * 109.46587 * 60.00300 * 15 13 12 43 43 H 1.08995 * 109.47036 * 179.97438 * 15 13 12 44 44 H 1.09000 * 109.47228 * 299.99948 * 15 13 12 45 45 H 0.96996 * 119.99821 * 180.02562 * 19 18 16 46 46 H 1.08995 * 110.03160 * 359.97438 * 24 6 4 47 47 H 1.08998 * 110.03319 * 121.42692 * 24 6 4 48 48 H 1.09004 * 110.48597 * 95.06674 * 25 24 6 49 49 H 1.08994 * 110.48679 * 217.71200 * 25 24 6 50 50 H 1.09005 * 110.75269 * 279.62515 * 26 25 24 51 51 H 1.08999 * 110.75712 * 156.25949 * 26 25 24 52 52 H 1.09000 * 110.48928 * 261.57113 * 27 6 4 53 53 H 1.08999 * 110.48469 * 24.21522 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5447 -0.0005 5 8 4.0808 0.5866 -0.0005 6 6 3.9208 2.9373 0.0000 7 6 3.4286 3.7093 -1.2259 8 7 1.9647 3.7641 -1.2129 9 6 1.3053 4.3980 -2.2028 10 8 1.9254 4.9247 -3.1063 11 7 -0.0415 4.4489 -2.1906 12 6 -0.7582 5.1385 -3.2664 13 6 -2.2647 5.0490 -3.0146 14 6 -2.6894 3.5795 -2.9790 15 6 -2.5980 5.7088 -1.6749 16 6 -3.0019 5.7588 -4.1207 17 1 -2.4510 6.2266 -4.9233 18 6 -4.3796 5.8110 -4.1082 19 7 -5.0505 5.2409 -3.1312 20 14 -5.2935 6.6902 -5.4798 21 1 -4.3157 7.2420 -6.4518 22 1 -6.1906 5.7301 -6.1718 23 1 -6.1008 7.7970 -4.9066 24 6 5.4582 2.8718 -0.0014 25 6 5.9304 3.5746 1.2881 26 6 4.7598 4.5199 1.6560 27 6 3.5119 3.6779 1.2900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8303 4.7222 -1.2029 34 1 3.7652 3.2053 -2.1318 35 1 1.4699 3.3436 -0.4923 36 1 -0.5362 4.0291 -1.4696 37 1 -0.4553 6.1852 -3.2919 38 1 -0.5211 4.6682 -4.2206 39 1 -2.1562 3.0665 -2.1786 40 1 -3.7625 3.5158 -2.7992 41 1 -2.4519 3.1094 -3.9333 42 1 -2.2954 6.7557 -1.7004 43 1 -3.6712 5.6454 -1.4958 44 1 -2.0647 5.1957 -0.8746 45 1 -6.0197 5.2773 -3.1226 46 1 5.7876 1.8329 -0.0020 47 1 5.8532 3.3901 -0.8752 48 1 6.0956 2.8455 2.0814 49 1 6.8384 4.1473 1.0999 50 1 4.7982 5.4321 1.0604 51 1 4.7706 4.7519 2.7209 52 1 2.6555 4.3257 1.1029 53 1 3.2863 2.9655 2.0836 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650320714.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:04 Heat of formation + Delta-G solvation = -155.087983 kcal Electronic energy + Delta-G solvation = -31636.798738 eV Core-core repulsion = 27507.111359 eV Total energy + Delta-G solvation = -4129.687378 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.21843 -40.89457 -39.30127 -38.17671 -37.62712 -35.42413 -34.93097 -32.84189 -32.55458 -31.00755 -29.72947 -27.52197 -27.50745 -27.03415 -25.61050 -24.79592 -23.12548 -22.20528 -21.36667 -20.62923 -20.52328 -19.63330 -18.51663 -17.83785 -17.74624 -17.61084 -17.01731 -16.63130 -16.52673 -16.17433 -15.55440 -15.31298 -15.15613 -15.01401 -14.91787 -14.67336 -14.35637 -13.96459 -13.94850 -13.72818 -13.65668 -13.16668 -13.07412 -12.98321 -12.77453 -12.66397 -12.58300 -12.53719 -12.39206 -12.21774 -12.13171 -12.11732 -11.98606 -11.78024 -11.55851 -11.51161 -11.44520 -11.36215 -11.26574 -11.09828 -10.66298 -10.38517 -10.27172 -9.62826 -8.00018 -6.15085 1.03089 1.42615 1.46997 1.53248 1.56313 1.81976 2.24491 2.48141 3.20128 3.23721 3.38237 3.44232 3.61557 3.79400 4.00314 4.05920 4.22951 4.29593 4.33302 4.39584 4.46141 4.46848 4.57697 4.62659 4.65698 4.74963 4.76390 4.83338 4.92192 4.93368 5.03897 5.05240 5.10380 5.12484 5.14117 5.15879 5.24232 5.24959 5.28973 5.41892 5.43715 5.46161 5.49223 5.67203 5.70429 5.71450 6.10060 6.19328 6.25861 6.47190 6.60548 6.89431 7.19234 7.52539 7.67123 8.99008 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.016572 B = 0.002695 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1689.229382 B =10385.995224 C =11287.036531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.059 3.941 3 O -0.357 6.357 4 C 0.474 3.526 5 O -0.529 6.529 6 C -0.058 4.058 7 C 0.157 3.843 8 N -0.731 5.731 9 C 0.699 3.301 10 O -0.641 6.641 11 N -0.725 5.725 12 C 0.168 3.832 13 C 0.053 3.947 14 C -0.118 4.118 15 C -0.119 4.119 16 C -0.527 4.527 17 H 0.044 0.956 18 C 0.029 3.971 19 N -0.898 5.898 20 Si 0.943 3.057 21 H -0.276 1.276 22 H -0.282 1.282 23 H -0.281 1.281 24 C -0.116 4.116 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.111 4.111 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.410 0.590 36 H 0.404 0.596 37 H 0.036 0.964 38 H 0.033 0.967 39 H 0.037 0.963 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.037 0.963 45 H 0.260 0.740 46 H 0.079 0.921 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.084 0.916 53 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.925 -8.051 14.565 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.014 4.014 3 O -0.273 6.273 4 C 0.318 3.682 5 O -0.418 6.418 6 C -0.060 4.060 7 C 0.032 3.968 8 N -0.391 5.391 9 C 0.398 3.602 10 O -0.523 6.523 11 N -0.380 5.380 12 C 0.044 3.956 13 C 0.052 3.948 14 C -0.176 4.176 15 C -0.177 4.177 16 C -0.566 4.566 17 H 0.062 0.938 18 C -0.170 4.170 19 N -0.537 5.537 20 Si 0.770 3.230 21 H -0.201 1.201 22 H -0.208 1.208 23 H -0.207 1.207 24 C -0.154 4.154 25 C -0.155 4.155 26 C -0.158 4.158 27 C -0.149 4.149 28 H 0.078 0.922 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.074 0.926 35 H 0.249 0.751 36 H 0.241 0.759 37 H 0.054 0.946 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.081 0.919 41 H 0.035 0.965 42 H 0.037 0.963 43 H 0.081 0.919 44 H 0.056 0.944 45 H 0.069 0.931 46 H 0.098 0.902 47 H 0.106 0.894 48 H 0.088 0.912 49 H 0.105 0.895 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.102 0.898 53 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 17.460 -7.932 13.803 23.628 hybrid contribution -1.182 -0.237 -0.605 1.348 sum 16.278 -8.169 13.198 22.492 Atomic orbital electron populations 1.21850 0.90942 1.04324 1.03720 1.23238 0.96599 0.79105 1.02474 1.86414 1.23873 1.33727 1.83300 1.23855 0.80761 0.92639 0.70989 1.90617 1.60826 1.43734 1.46605 1.21615 0.98123 0.87796 0.98473 1.21211 0.79047 1.00896 0.95642 1.45083 1.07007 1.59811 1.27190 1.16127 0.82199 0.79430 0.82399 1.90858 1.68088 1.54041 1.39328 1.45174 1.04017 1.59762 1.29019 1.21116 0.92599 0.94185 0.87716 1.18347 0.88206 0.93841 0.94383 1.21647 1.02481 0.96038 0.97456 1.21652 1.02390 0.97465 0.96157 1.21309 0.91845 1.34969 1.08459 0.93817 1.25422 0.98109 0.95963 0.97551 1.69912 1.07085 1.44532 1.32187 0.85736 0.78589 0.78546 0.80095 1.20086 1.20808 1.20709 1.22299 0.88956 1.03292 1.00837 1.22363 0.98928 0.98325 0.95919 1.22542 0.92648 0.97973 1.02603 1.22516 1.00188 0.98821 0.93343 0.92245 0.88446 0.90551 0.92036 0.90458 0.89286 0.92635 0.75065 0.75915 0.94557 0.94880 0.94443 0.91885 0.96530 0.96330 0.91917 0.94431 0.93074 0.90200 0.89415 0.91169 0.89546 0.90556 0.89456 0.89783 0.90302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 10.29 71.98 0.74 -1.47 16 2 C 0.06 1.04 6.19 71.98 0.45 1.49 16 3 O -0.36 -7.22 7.73 -51.45 -0.40 -7.62 16 4 C 0.47 10.29 6.43 71.24 0.46 10.74 16 5 O -0.53 -13.86 14.96 21.98 0.33 -13.53 16 6 C -0.06 -1.03 0.63 -52.20 -0.03 -1.06 16 7 C 0.16 3.47 4.29 86.38 0.37 3.85 16 8 N -0.73 -18.57 4.51 -478.54 -2.16 -20.73 16 9 C 0.70 24.38 8.57 179.05 1.53 25.91 16 10 O -0.64 -27.79 16.34 -3.98 -0.07 -27.85 16 11 N -0.72 -25.30 4.96 -478.52 -2.37 -27.67 16 12 C 0.17 7.23 4.50 86.38 0.39 7.62 16 13 C 0.05 2.43 0.50 -52.93 -0.03 2.40 16 14 C -0.12 -5.19 8.08 71.98 0.58 -4.61 16 15 C -0.12 -5.19 8.08 71.99 0.58 -4.61 16 16 C -0.53 -27.84 8.01 25.60 0.21 -27.63 16 17 H 0.04 2.37 7.74 -2.91 -0.02 2.35 16 18 C 0.03 1.53 5.15 84.65 0.44 1.97 16 19 N -0.90 -47.40 9.35 21.45 0.20 -47.20 16 20 Si 0.94 42.50 29.54 68.60 2.03 44.53 16 21 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 23 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 24 C -0.12 -1.77 6.05 31.32 0.19 -1.58 16 25 C -0.12 -1.30 6.83 31.67 0.22 -1.09 16 26 C -0.12 -1.30 6.91 31.90 0.22 -1.08 16 27 C -0.11 -1.53 5.62 31.68 0.18 -1.35 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 1.18 8.13 -2.38 -0.02 1.16 16 32 H 0.08 1.23 8.13 -2.39 -0.02 1.21 16 33 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.41 8.87 5.88 -92.71 -0.55 8.32 16 36 H 0.40 12.25 6.18 -92.71 -0.57 11.67 16 37 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.03 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 40 H 0.06 3.07 6.07 -2.39 -0.01 3.05 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 43 H 0.06 3.05 6.07 -2.39 -0.01 3.03 16 44 H 0.04 1.36 6.86 -2.39 -0.02 1.34 16 45 H 0.26 13.17 8.31 -92.71 -0.77 12.40 16 46 H 0.08 1.48 6.40 -2.39 -0.02 1.46 16 47 H 0.09 1.22 7.67 -2.39 -0.02 1.20 16 48 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 49 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 51 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.08 1.21 7.07 -2.39 -0.02 1.19 16 53 H 0.08 1.02 7.85 -2.39 -0.02 1.00 16 Total: -1.00 -65.00 409.91 3.83 -61.17 By element: Atomic # 1 Polarization: 29.63 SS G_CDS: -0.21 Total: 29.41 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: 6.49 Total: 9.50 kcal Atomic # 7 Polarization: -91.27 SS G_CDS: -4.33 Total: -95.60 kcal Atomic # 8 Polarization: -48.87 SS G_CDS: -0.13 Total: -49.00 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -65.00 3.83 -61.17 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650320714.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.922 kcal (2) G-P(sol) polarization free energy of solvation -64.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds