Wall clock time and date at job start Sat Apr 11 2020 06:11:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42907 * 114.00067 * 2 1 4 4 H 1.08997 * 109.57467 * 29.84560 * 3 2 1 5 5 C 1.53093 * 109.52270 * 269.68371 * 3 2 1 6 6 O 1.42902 * 109.41620 * 297.70650 * 5 3 2 7 7 C 1.42908 * 114.09665 * 298.83798 * 6 5 3 8 8 C 1.53111 * 109.48615 * 61.11187 * 7 6 5 9 9 C 1.53177 * 109.15629 * 302.52808 * 8 7 6 10 10 H 1.08993 * 109.54367 * 296.92994 * 9 8 7 11 11 C 1.52999 * 109.54256 * 176.75486 * 9 8 7 12 12 C 1.50703 * 109.46793 * 65.17681 * 11 9 8 13 13 O 1.21275 * 120.00385 * 359.97438 * 12 11 9 14 14 N 1.34787 * 119.99972 * 180.02562 * 12 11 9 15 15 C 1.46493 * 119.99823 * 180.02562 * 14 12 11 16 16 C 1.53006 * 109.47083 * 179.97438 * 15 14 12 17 17 H 1.09007 * 109.49500 * 304.93351 * 16 15 14 18 18 C 1.53034 * 109.49754 * 184.83603 * 16 15 14 19 19 C 1.53047 * 109.53794 * 178.68227 * 18 16 15 20 20 C 1.53190 * 109.31207 * 61.36243 * 19 18 16 21 21 N 1.46932 * 108.77700 * 305.36609 * 20 19 18 22 22 C 1.36931 * 120.63228 * 233.62896 * 21 20 19 23 23 H 1.08001 * 120.00275 * 151.81096 * 22 21 20 24 24 C 1.38812 * 119.99860 * 331.81371 * 22 21 20 25 25 N 1.31614 * 120.00428 * 343.07522 * 24 22 21 26 26 Si 1.86806 * 119.99729 * 163.07818 * 24 22 21 27 27 H 1.48501 * 109.47241 * 0.02562 * 26 24 22 28 28 H 1.48508 * 109.47030 * 119.99810 * 26 24 22 29 29 H 1.48497 * 109.46972 * 239.99616 * 26 24 22 30 30 C 1.46924 * 118.73553 * 53.61183 * 21 20 19 31 31 H 1.08995 * 109.46711 * 300.00178 * 1 2 3 32 32 H 1.08994 * 109.46780 * 59.99747 * 1 2 3 33 33 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47491 * 57.68505 * 5 3 2 35 35 H 1.09000 * 109.48057 * 177.72172 * 5 3 2 36 36 H 1.08995 * 109.47989 * 181.14278 * 7 6 5 37 37 H 1.08996 * 109.48194 * 301.17064 * 7 6 5 38 38 H 1.08993 * 109.59735 * 182.57309 * 8 7 6 39 39 H 1.09008 * 109.44687 * 62.38299 * 8 7 6 40 40 H 1.09001 * 109.47301 * 305.17697 * 11 9 8 41 41 H 1.08996 * 109.47273 * 185.17500 * 11 9 8 42 42 H 0.97001 * 119.99448 * 359.97438 * 14 12 11 43 43 H 1.09001 * 109.47460 * 59.99465 * 15 14 12 44 44 H 1.09005 * 109.47105 * 299.99370 * 15 14 12 45 45 H 1.09004 * 109.46139 * 298.69920 * 18 16 15 46 46 H 1.09001 * 109.46380 * 58.66622 * 18 16 15 47 47 H 1.08992 * 109.49774 * 181.31914 * 19 18 16 48 48 H 1.09005 * 109.49553 * 301.38123 * 19 18 16 49 49 H 1.08999 * 109.58911 * 65.15332 * 20 19 18 50 50 H 1.08993 * 109.58743 * 185.57882 * 20 19 18 51 51 H 0.96997 * 120.00514 * 180.02562 * 25 24 22 52 52 H 1.08998 * 109.58575 * 186.60623 * 30 21 20 53 53 H 1.09001 * 109.59233 * 66.17854 * 30 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 2.0014 0.5111 5 6 2.2256 1.7696 -1.4429 6 8 3.1433 0.8883 -2.0934 7 6 4.4381 0.8452 -1.4902 8 6 4.3135 0.3452 -0.0484 9 6 3.3607 1.2646 0.7219 10 1 3.7806 2.2693 0.7671 11 6 3.1663 0.7268 2.1410 12 6 4.4730 0.7980 2.8885 13 8 5.4623 1.2353 2.3400 14 7 4.5423 0.3747 4.1663 15 6 5.8124 0.4445 4.8930 16 6 5.6181 -0.0934 6.3122 17 1 4.8092 0.4507 6.7999 18 6 6.9114 0.0902 7.1095 19 6 6.7079 -0.4175 8.5389 20 6 6.3700 -1.9112 8.5027 21 7 5.2127 -2.1131 7.6201 22 6 4.1039 -2.7818 8.0655 23 1 3.1338 -2.5575 7.6473 24 6 4.2267 -3.7479 9.0546 25 7 5.4068 -4.2614 9.3301 26 14 2.7169 -4.3194 9.9946 27 1 1.5205 -3.5933 9.4981 28 1 2.5298 -5.7785 9.7908 29 1 2.9003 -4.0413 11.4417 30 6 5.2678 -1.5835 6.2508 31 1 -0.3632 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 1.2737 1.7597 -1.9738 35 1 2.6314 2.7813 -1.4426 36 1 5.0800 0.1694 -2.0552 37 1 4.8728 1.8447 -1.4906 38 1 5.2937 0.3549 0.4280 39 1 3.9180 -0.6706 -0.0495 40 1 2.8304 -0.3091 2.0942 41 1 2.4187 1.3282 2.6582 42 1 3.7511 0.0247 4.6048 43 1 6.1477 1.4806 4.9402 44 1 6.5605 -0.1563 4.3757 45 1 7.7140 -0.4742 6.6345 46 1 7.1761 1.1473 7.1339 47 1 7.6219 -0.2650 9.1127 48 1 5.8894 0.1300 9.0063 49 1 7.2238 -2.4699 8.1193 50 1 6.1272 -2.2554 9.5080 51 1 5.4926 -4.9368 10.0210 52 1 4.2979 -1.7113 5.7703 53 1 6.0318 -2.1153 5.6837 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650833607.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:14 Heat of formation + Delta-G solvation = -145.267623 kcal Electronic energy + Delta-G solvation = -30828.222495 eV Core-core repulsion = 26698.960959 eV Total energy + Delta-G solvation = -4129.261535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.34426 -40.31902 -39.29587 -37.90156 -36.30422 -35.09045 -34.64965 -32.30949 -32.07590 -31.43643 -29.87583 -27.40636 -27.26616 -26.72317 -24.44901 -24.32334 -23.79044 -22.45947 -21.45477 -20.89582 -20.49747 -18.69432 -18.06301 -17.52522 -17.42463 -16.97052 -16.88198 -16.67776 -16.41724 -16.19269 -15.88684 -15.75943 -15.45552 -15.05000 -14.90040 -14.73933 -14.50884 -14.19256 -14.04142 -13.85857 -13.74564 -13.51553 -13.31383 -13.08607 -13.00513 -12.89158 -12.57900 -12.47308 -12.23454 -12.20331 -11.99388 -11.94479 -11.82626 -11.71398 -11.57070 -11.32474 -11.26830 -11.09884 -10.97837 -10.70552 -10.54189 -10.04839 -9.96715 -8.67649 -7.86728 -5.32870 1.46575 1.48507 1.58678 1.70906 2.28440 2.51251 2.76533 3.10318 3.28276 3.59590 3.64740 3.72173 3.83154 3.92300 3.99998 4.02243 4.06591 4.17632 4.32508 4.37922 4.40932 4.48074 4.52866 4.55558 4.57086 4.58974 4.62717 4.66553 4.77294 4.77871 4.82798 4.89107 4.91772 4.93722 4.97346 5.01827 5.07157 5.10626 5.18717 5.24440 5.33526 5.35873 5.41950 5.54081 5.58665 5.67286 5.78168 6.16159 6.39289 6.43166 6.60983 7.15110 7.30473 7.86440 8.38697 9.19758 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002383 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.853974 B =11746.201174 C =13180.612791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.393 6.393 3 C 0.059 3.941 4 H 0.095 0.905 5 C 0.035 3.965 6 O -0.396 6.396 7 C 0.063 3.937 8 C -0.147 4.147 9 C -0.067 4.067 10 H 0.090 0.910 11 C -0.126 4.126 12 C 0.510 3.490 13 O -0.577 6.577 14 N -0.722 5.722 15 C 0.139 3.861 16 C -0.099 4.099 17 H 0.077 0.923 18 C -0.097 4.097 19 C -0.130 4.130 20 C 0.172 3.828 21 N -0.610 5.610 22 C -0.259 4.259 23 H 0.072 0.928 24 C -0.054 4.054 25 N -0.937 5.937 26 Si 0.966 3.034 27 H -0.262 1.262 28 H -0.295 1.295 29 H -0.292 1.292 30 C 0.153 3.847 31 H 0.054 0.946 32 H 0.049 0.951 33 H 0.086 0.914 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.057 0.943 38 H 0.074 0.926 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.117 0.883 42 H 0.410 0.590 43 H 0.071 0.929 44 H 0.052 0.948 45 H 0.053 0.947 46 H 0.080 0.920 47 H 0.068 0.932 48 H 0.054 0.946 49 H -0.009 1.009 50 H 0.051 0.949 51 H 0.249 0.751 52 H 0.057 0.943 53 H 0.002 0.998 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 16.156 -17.849 25.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.312 6.312 3 C 0.001 3.999 4 H 0.113 0.887 5 C -0.042 4.042 6 O -0.315 6.315 7 C -0.014 4.014 8 C -0.185 4.185 9 C -0.085 4.085 10 H 0.108 0.892 11 C -0.165 4.165 12 C 0.299 3.701 13 O -0.458 6.458 14 N -0.374 5.374 15 C 0.014 3.986 16 C -0.120 4.120 17 H 0.096 0.904 18 C -0.135 4.135 19 C -0.169 4.169 20 C 0.047 3.953 21 N -0.333 5.333 22 C -0.389 4.389 23 H 0.089 0.911 24 C -0.249 4.249 25 N -0.584 5.584 26 Si 0.795 3.205 27 H -0.186 1.186 28 H -0.222 1.222 29 H -0.219 1.219 30 C 0.028 3.972 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.105 0.895 34 H 0.123 0.877 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.135 0.865 42 H 0.246 0.754 43 H 0.090 0.910 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.073 0.927 49 H 0.009 0.991 50 H 0.070 0.930 51 H 0.058 0.942 52 H 0.075 0.925 53 H 0.020 0.980 Dipole moment (debyes) X Y Z Total from point charges -7.107 16.059 -18.283 25.351 hybrid contribution -0.733 -0.900 1.257 1.711 sum -7.840 15.159 -17.026 24.107 Atomic orbital electron populations 1.22954 0.80052 1.03437 1.00825 1.87978 1.20740 1.27461 1.95050 1.22899 0.94728 0.86006 0.96225 0.88681 1.23245 0.94420 0.93354 0.93140 1.87911 1.22961 1.66259 1.54382 1.22611 0.84471 1.01136 0.93173 1.22184 1.00667 0.99444 0.96169 1.21034 0.94272 1.00382 0.92850 0.89185 1.21641 0.94438 1.05218 0.95224 1.21139 0.91335 0.76195 0.81472 1.90631 1.39261 1.47686 1.68174 1.46104 1.13430 1.64566 1.13283 1.21214 0.85765 1.00775 0.90830 1.21709 0.99219 0.96926 0.94128 0.90434 1.21341 0.96184 1.01219 0.94805 1.21998 1.00677 0.97121 0.97090 1.20632 0.87577 0.92137 0.94983 1.44323 1.16066 1.64064 1.08818 1.19576 0.87426 1.13214 1.18726 0.91084 1.25830 0.99099 0.96997 1.02964 1.70202 1.24348 1.29748 1.34080 0.85223 0.79893 0.77253 0.78174 1.18624 1.22246 1.21858 1.21014 0.98354 0.92049 0.85819 0.92697 0.93238 0.89522 0.87720 0.90846 0.88680 0.92453 0.90764 0.92411 0.88035 0.86487 0.75370 0.91037 0.92962 0.92860 0.90141 0.91321 0.92728 0.99088 0.93048 0.94225 0.92489 0.97959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.82 113.37 1.23 1.51 16 2 O -0.39 -7.13 9.08 -141.82 -1.29 -8.42 16 3 C 0.06 0.87 2.43 30.69 0.07 0.94 16 4 H 0.10 0.90 7.79 -2.39 -0.02 0.89 16 5 C 0.04 0.52 6.49 72.01 0.47 0.99 16 6 O -0.40 -8.45 10.70 -141.82 -1.52 -9.96 16 7 C 0.06 1.23 6.84 72.02 0.49 1.72 16 8 C -0.15 -3.23 4.97 30.69 0.15 -3.07 16 9 C -0.07 -1.20 1.75 -10.67 -0.02 -1.21 16 10 H 0.09 1.62 7.96 -2.39 -0.02 1.60 16 11 C -0.13 -2.21 4.93 29.85 0.15 -2.07 16 12 C 0.51 12.30 7.57 87.66 0.66 12.97 16 13 O -0.58 -17.58 13.99 -3.01 -0.04 -17.62 16 14 N -0.72 -17.03 5.33 -463.05 -2.47 -19.50 16 15 C 0.14 3.67 5.07 86.38 0.44 4.11 16 16 C -0.10 -3.01 2.38 -10.71 -0.03 -3.03 16 17 H 0.08 2.33 8.14 -2.38 -0.02 2.31 16 18 C -0.10 -2.95 5.17 30.62 0.16 -2.79 16 19 C -0.13 -4.67 6.08 30.67 0.19 -4.48 16 20 C 0.17 8.26 5.30 86.36 0.46 8.72 16 21 N -0.61 -29.83 2.99 -699.10 -2.09 -31.92 16 22 C -0.26 -13.87 9.58 84.03 0.81 -13.07 16 23 H 0.07 3.63 7.88 -2.91 -0.02 3.61 16 24 C -0.05 -2.97 4.92 84.86 0.42 -2.55 16 25 N -0.94 -55.55 11.20 21.65 0.24 -55.31 16 26 Si 0.97 44.14 29.59 68.60 2.03 46.17 16 27 H -0.26 -11.17 7.11 99.48 0.71 -10.47 16 28 H -0.30 -13.62 7.11 99.48 0.71 -12.91 16 29 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 30 C 0.15 6.01 5.60 86.36 0.48 6.49 16 31 H 0.05 0.49 8.09 -2.39 -0.02 0.47 16 32 H 0.05 0.47 7.86 -2.39 -0.02 0.45 16 33 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.10 1.24 7.86 -2.39 -0.02 1.22 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.07 1.92 6.05 -2.39 -0.01 1.91 16 39 H 0.06 1.43 7.84 -2.38 -0.02 1.42 16 40 H 0.10 1.88 7.77 -2.39 -0.02 1.86 16 41 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.41 8.53 7.70 -92.71 -0.71 7.82 16 43 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.05 1.54 8.14 -2.38 -0.02 1.52 16 45 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 46 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.05 1.96 8.14 -2.38 -0.02 1.94 16 49 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 50 H 0.05 2.80 6.06 -2.39 -0.01 2.79 16 51 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 52 H 0.06 2.11 7.13 -2.39 -0.02 2.10 16 53 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 Total: -1.00 -70.07 406.38 1.16 -68.91 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: 0.16 Total: 22.49 kcal Atomic # 6 Polarization: -0.96 SS G_CDS: 6.13 Total: 5.17 kcal Atomic # 7 Polarization: -102.41 SS G_CDS: -4.32 Total: -106.73 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -2.85 Total: -36.01 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -70.07 1.16 -68.91 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650833607.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.359 kcal (2) G-P(sol) polarization free energy of solvation -70.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds