Wall clock time and date at job start Sat Apr 11 2020 06:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42904 * 109.46714 * 2 1 4 4 C 1.42900 * 113.99754 * 184.39177 * 3 2 1 5 5 H 1.08999 * 109.47237 * 15.37864 * 4 3 2 6 6 C 1.50701 * 109.47045 * 135.37305 * 4 3 2 7 7 O 1.21290 * 119.99768 * 5.80754 * 6 4 3 8 8 N 1.34775 * 120.00168 * 185.80049 * 6 4 3 9 9 C 1.46497 * 119.99809 * 184.84241 * 8 6 4 10 10 C 1.53005 * 109.46932 * 180.02562 * 9 8 6 11 11 H 1.08994 * 112.85274 * 45.32835 * 10 9 8 12 12 C 1.53776 * 113.61264 * 176.52987 * 10 9 8 13 13 C 1.53785 * 87.08288 * 139.97731 * 12 10 9 14 14 H 1.09001 * 113.61263 * 89.19278 * 13 12 10 15 15 N 1.46494 * 113.61672 * 220.01973 * 13 12 10 16 16 C 1.36946 * 119.99711 * 205.00020 * 15 13 12 17 17 H 1.07997 * 120.00066 * 359.97438 * 16 15 13 18 18 C 1.38814 * 119.99639 * 179.97438 * 16 15 13 19 19 N 1.31613 * 120.00187 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99810 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46770 * 60.00124 * 20 18 16 22 22 H 1.48500 * 109.46864 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.46911 * 300.00533 * 20 18 16 24 24 C 1.53788 * 113.61085 * 274.13545 * 10 9 8 25 25 C 1.52998 * 109.47355 * 255.37211 * 4 3 2 26 26 C 1.53186 * 109.54221 * 64.90361 * 25 4 3 27 27 C 1.53089 * 109.16224 * 183.15025 * 26 25 4 28 28 O 1.42904 * 109.41469 * 57.61218 * 27 26 25 29 29 C 1.42904 * 114.09703 * 298.83851 * 28 27 26 30 30 C 1.53093 * 109.41307 * 61.15921 * 29 28 27 31 31 H 1.09000 * 109.47388 * 299.99394 * 1 2 3 32 32 H 1.08996 * 109.47169 * 59.99652 * 1 2 3 33 33 H 1.09002 * 109.46968 * 179.97438 * 1 2 3 34 34 H 1.08999 * 109.46891 * 240.00785 * 2 1 3 35 35 H 1.08996 * 109.47169 * 120.00348 * 2 1 3 36 36 H 0.96996 * 119.99792 * 4.85173 * 8 6 4 37 37 H 1.08999 * 109.47348 * 300.00117 * 9 8 6 38 38 H 1.08997 * 109.47337 * 60.00136 * 9 8 6 39 39 H 1.08997 * 113.61774 * 254.52601 * 12 10 9 40 40 H 1.08999 * 113.61883 * 25.42912 * 12 10 9 41 41 H 0.96992 * 120.00089 * 24.99297 * 15 13 12 42 42 H 0.96999 * 120.00264 * 179.97438 * 19 18 16 43 43 H 1.09002 * 113.61300 * 334.56729 * 24 10 9 44 44 H 1.08996 * 113.60783 * 105.47103 * 24 10 9 45 45 H 1.08995 * 109.54654 * 185.17276 * 25 4 3 46 46 H 1.08992 * 109.52411 * 303.06293 * 26 25 4 47 47 H 1.09005 * 109.51823 * 63.25068 * 26 25 4 48 48 H 1.09004 * 109.48695 * 297.62878 * 27 26 25 49 49 H 1.08997 * 109.48000 * 177.59165 * 27 26 25 50 50 H 1.08994 * 109.47901 * 301.17566 * 29 28 27 51 51 H 1.08995 * 109.48843 * 181.14573 * 29 28 27 52 52 H 1.08996 * 109.52309 * 182.48360 * 30 29 28 53 53 H 1.08996 * 109.52434 * 62.29634 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4272 1.4615 -0.1000 5 1 3.8460 0.5101 -0.4280 6 6 3.7759 2.5347 -1.0988 7 8 2.8992 3.2136 -1.5903 8 7 5.0619 2.7403 -1.4458 9 6 5.4122 3.8511 -2.3343 10 6 6.9243 3.8599 -2.5679 11 1 7.3251 2.8695 -2.7831 12 6 7.3882 4.9408 -3.5584 13 6 8.5897 5.1684 -2.6259 14 1 9.4475 4.5368 -2.8570 15 7 8.9489 6.5795 -2.4652 16 6 10.2288 6.9254 -2.1221 17 1 10.9731 6.1579 -1.9696 18 6 10.5693 8.2625 -1.9704 19 7 9.6620 9.1978 -2.1557 20 14 12.3149 8.7344 -1.5017 21 1 13.2565 8.2397 -2.5380 22 1 12.4185 10.2125 -1.4029 23 1 12.6571 8.1259 -0.1910 24 6 7.7101 4.6211 -1.4870 25 6 4.0068 1.8296 1.2673 26 6 3.7594 0.6842 2.2539 27 6 4.2720 1.0930 3.6373 28 8 3.6171 2.2940 4.0507 29 6 3.8512 3.4117 3.1915 30 6 3.3217 3.0960 1.7902 31 1 -0.3634 0.5137 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 1.8933 -0.5137 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 5.7553 2.1526 -1.1074 37 1 4.8983 3.7297 -3.2879 38 1 5.1095 4.7925 -1.8758 39 1 7.6634 4.5473 -4.5369 40 1 6.7146 5.7956 -3.6191 41 1 8.2803 7.2687 -2.6019 42 1 9.8998 10.1321 -2.0493 43 1 7.1245 5.3882 -0.9804 44 1 8.2446 3.9695 -0.7958 45 1 5.0781 2.0069 1.1735 46 1 2.6912 0.4747 2.3085 47 1 4.2896 -0.2069 1.9178 48 1 5.3477 1.2631 3.5908 49 1 4.0600 0.2987 4.3529 50 1 4.9213 3.6120 3.1392 51 1 3.3362 4.2876 3.5858 52 1 3.5388 3.9296 1.1224 53 1 2.2446 2.9352 1.8354 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001656147527.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:11:28 Heat of formation + Delta-G solvation = -134.570655 kcal Electronic energy + Delta-G solvation = -30659.754769 eV Core-core repulsion = 26530.957089 eV Total energy + Delta-G solvation = -4128.797680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 340.220 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55148 -40.28122 -39.64788 -38.57547 -36.06403 -35.30193 -34.79690 -32.28890 -32.15296 -31.95128 -29.81525 -27.84914 -26.45131 -25.81767 -24.83951 -24.47813 -23.53356 -22.43659 -21.70172 -21.04913 -20.43312 -19.05395 -18.36570 -17.96684 -17.52795 -16.98799 -16.92532 -16.59024 -16.44327 -16.19383 -15.94588 -15.70721 -15.55951 -15.20976 -15.09681 -14.77799 -14.72536 -14.40901 -13.95459 -13.43584 -13.34534 -13.26956 -13.22916 -13.19731 -13.01064 -12.91098 -12.71865 -12.61815 -12.37781 -12.25113 -12.22004 -12.07616 -11.96881 -11.78954 -11.56540 -11.51538 -11.23037 -11.09496 -10.98677 -10.80678 -10.66948 -10.17033 -10.09085 -8.96903 -7.93752 -5.22125 1.47453 1.50393 1.53078 1.56518 1.90808 2.57252 2.87781 2.96793 3.37797 3.49873 3.55717 3.71032 3.75754 3.76694 3.91609 3.99105 4.01259 4.10024 4.18069 4.26387 4.30381 4.33369 4.36519 4.43095 4.43822 4.48168 4.55377 4.58876 4.67794 4.71659 4.76932 4.79288 4.83556 4.89884 4.98269 4.99850 5.02394 5.05477 5.11443 5.14600 5.23270 5.26429 5.35863 5.37864 5.43125 5.53456 5.74383 6.12726 6.26837 6.28311 6.57607 7.23388 7.33727 8.12604 8.33907 9.29581 Molecular weight = 340.22amu Principal moments of inertia in cm(-1) A = 0.013934 B = 0.002293 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.038734 B =12208.861473 C =13502.262275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.044 3.956 3 O -0.379 6.379 4 C 0.086 3.914 5 H 0.123 0.877 6 C 0.502 3.498 7 O -0.575 6.575 8 N -0.709 5.709 9 C 0.140 3.860 10 C -0.093 4.093 11 H 0.125 0.875 12 C -0.139 4.139 13 C 0.143 3.857 14 H 0.082 0.918 15 N -0.730 5.730 16 C -0.242 4.242 17 H 0.080 0.920 18 C -0.081 4.081 19 N -0.973 5.973 20 Si 0.973 3.027 21 H -0.276 1.276 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.151 4.151 25 C -0.096 4.096 26 C -0.145 4.145 27 C 0.053 3.947 28 O -0.404 6.404 29 C 0.063 3.937 30 C -0.141 4.141 31 H 0.055 0.945 32 H 0.047 0.953 33 H 0.095 0.905 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.417 0.583 37 H 0.062 0.938 38 H 0.043 0.957 39 H 0.078 0.922 40 H 0.063 0.937 41 H 0.371 0.629 42 H 0.250 0.750 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.105 0.895 48 H 0.061 0.939 49 H 0.110 0.890 50 H 0.057 0.943 51 H 0.091 0.909 52 H 0.049 0.951 53 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.290 -27.098 7.970 31.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 O -0.298 6.298 4 C 0.024 3.976 5 H 0.141 0.859 6 C 0.289 3.711 7 O -0.454 6.454 8 N -0.363 5.363 9 C 0.016 3.984 10 C -0.112 4.112 11 H 0.143 0.857 12 C -0.179 4.179 13 C 0.034 3.966 14 H 0.100 0.900 15 N -0.368 5.368 16 C -0.374 4.374 17 H 0.098 0.902 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.802 3.198 21 H -0.202 1.202 22 H -0.226 1.226 23 H -0.203 1.203 24 C -0.192 4.192 25 C -0.115 4.115 26 C -0.182 4.182 27 C -0.023 4.023 28 O -0.323 6.323 29 C -0.014 4.014 30 C -0.179 4.179 31 H 0.074 0.926 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.254 0.746 37 H 0.080 0.920 38 H 0.061 0.939 39 H 0.097 0.903 40 H 0.082 0.918 41 H 0.202 0.798 42 H 0.058 0.942 43 H 0.072 0.928 44 H 0.090 0.910 45 H 0.118 0.882 46 H 0.090 0.910 47 H 0.124 0.876 48 H 0.079 0.921 49 H 0.128 0.872 50 H 0.076 0.924 51 H 0.109 0.891 52 H 0.068 0.932 53 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.955 -26.439 7.841 30.907 hybrid contribution 0.951 1.094 -0.155 1.458 sum -13.004 -25.345 7.686 29.505 Atomic orbital electron populations 1.21761 0.93564 1.03338 1.02195 1.22942 0.96136 0.82542 1.01534 1.88053 1.19315 1.28285 1.94145 1.22002 0.83945 0.98090 0.93535 0.85947 1.21232 0.82542 0.85153 0.82177 1.90710 1.49040 1.49912 1.55697 1.45826 1.07954 1.32519 1.49965 1.21197 0.95060 0.88748 0.93416 1.22466 0.92091 0.99563 0.97091 0.85731 1.23337 0.97923 0.98087 0.98503 1.22000 0.94642 0.84953 0.95052 0.90000 1.42638 1.09238 1.02720 1.82172 1.19701 0.88848 0.91650 1.37164 0.90198 1.25607 1.01696 0.96045 1.03916 1.69818 1.34764 0.99548 1.58214 0.85216 0.79978 0.76218 0.78391 1.20231 1.22573 1.20287 1.23731 0.98878 0.98889 0.97689 1.21640 1.00586 0.96205 0.93033 1.22300 1.03118 0.98036 0.94791 1.22796 0.96575 0.86849 0.96088 1.87911 1.73724 1.19838 1.50817 1.22570 1.00261 0.89136 0.89431 1.22019 1.01326 0.97609 0.96943 0.92567 0.93365 0.88673 0.92271 0.90805 0.74599 0.91975 0.93851 0.90338 0.91787 0.79752 0.94155 0.92795 0.90994 0.88155 0.90987 0.87622 0.92091 0.87234 0.92445 0.89053 0.93182 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.58 6.07 71.98 0.44 1.01 16 3 O -0.38 -7.90 8.27 -130.01 -1.07 -8.97 16 4 C 0.09 1.41 2.36 29.85 0.07 1.48 16 5 H 0.12 1.09 7.60 -2.39 -0.02 1.07 16 6 C 0.50 12.01 6.23 87.66 0.55 12.56 16 7 O -0.58 -20.16 16.52 15.91 0.26 -19.90 16 8 N -0.71 -13.51 5.46 -463.05 -2.53 -16.04 16 9 C 0.14 3.38 5.50 86.38 0.48 3.85 16 10 C -0.09 -2.11 3.75 -10.26 -0.04 -2.15 16 11 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 12 C -0.14 -4.13 7.40 31.12 0.23 -3.90 16 13 C 0.14 5.21 4.48 45.58 0.20 5.42 16 14 H 0.08 2.87 8.10 -2.39 -0.02 2.85 16 15 N -0.73 -36.32 5.40 -320.16 -1.73 -38.05 16 16 C -0.24 -13.21 9.97 84.03 0.84 -12.38 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 19 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 20 Si 0.97 45.83 29.55 68.60 2.03 47.86 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 23 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 24 C -0.15 -4.51 7.45 31.18 0.23 -4.28 16 25 C -0.10 -1.38 2.09 -10.67 -0.02 -1.40 16 26 C -0.15 -1.48 4.82 30.69 0.15 -1.33 16 27 C 0.05 0.65 6.84 72.01 0.49 1.14 16 28 O -0.40 -7.99 10.77 -148.98 -1.60 -9.59 16 29 C 0.06 1.21 6.84 72.01 0.49 1.71 16 30 C -0.14 -2.95 5.03 30.68 0.15 -2.79 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.63 8.05 -2.39 -0.02 0.61 16 35 H 0.07 0.64 6.23 -2.39 -0.01 0.62 16 36 H 0.42 4.89 8.42 -92.71 -0.78 4.10 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.04 1.30 7.88 -2.39 -0.02 1.28 16 39 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 41 H 0.37 20.22 7.92 -92.71 -0.73 19.48 16 42 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 43 H 0.05 1.90 7.92 -2.39 -0.02 1.88 16 44 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.10 1.16 8.01 -2.39 -0.02 1.14 16 46 H 0.07 0.89 6.16 -2.39 -0.01 0.87 16 47 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 48 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 49 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 51 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 52 H 0.05 1.26 7.51 -2.39 -0.02 1.25 16 53 H 0.06 1.58 7.46 -2.39 -0.02 1.56 16 Total: -1.00 -76.87 418.12 0.48 -76.39 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.62 Total: 34.58 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: 5.47 Total: -6.46 kcal Atomic # 7 Polarization: -109.91 SS G_CDS: -3.98 Total: -113.89 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -2.42 Total: -38.47 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.86 kcal Total: -76.87 0.48 -76.39 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001656147527.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.183 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds